CI01000004_06183916_06192361 (MFSD12A)


Basic Information

Item Value
gene id CI01000004_06183916_06192361
gene name MFSD12A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6183130 ~ 6193478 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06183916_06192361.mRNA
AGGAGAATTGCTTGACTTAATTTATCTGATTTACGGTTGCATATTCATGCTGCATTCAAGTCATGTCGTAATTACCGTAATTTCAAGATGACAACACGTGATGTTCTACTCGGAGATACCCTACCTCGGCTTGGGAATTATGCAACTCCTAAAAGAATCTGAAGAGGTCAGGTGGTACACGTAGGATCTCTTAGAAAATTCCCAACTTACAAATTGTAATTACGAGCAGGTGAACACATTTTATAAGTTGAAATCTCGTTATTACGGTAATTACGACATGTCAACGGACATATAAACCTGCACAAAGATAAATTACACAAGCCTAAGCAATATTGTTGCAAAGAAAATGTCTTTGTTTTTATAATGGTTTTTATAATTTTTTAAGAGTCACAAAACATGACTAAATCTATCTTGTGCGCACAGAAACGAGGAAAGGGGAAAACACGGGAGGAATATAAAAAGTGCTGCACGAACAGCAGGTGGTGATATTTGACAACTGCTACTTTTGCTTTATTGTGTTATGTGGCTCAAACACTAGCAAATCCAAATACATAAAAATAATATTGTAGGCTATTACTGTAGAAATAAGCTTAAACCCGCGATTGATCATATTTATGGAAAAAAAACTTACCACACTAGACAAAAGACTTTATTAAAAAAAAAAATCTTAAAGGGACTTTAATTCGCTTTAAAAAGCCATCGTCAGACGAATGAGAGAGGGCGTGGCTTAATAAGCACGTGATAAACAACAGGAATCGAAAATAACAAGACACTACGCTATACTATCACTTTTGCACTAGACAAATTCAGCATTAACCATGCTGCATATGATATTTACCAAAATTACATTTAAAAGTAGGCTATAAGTCTCAATCGATGAAAGAGAATGAAGAAGTTTTATTTCGCGCCTCGTCCATCGTGACTTATTTGCGAAGTCAGCTGACCAAATCCAGAGGAATTGCTGTTATAACAGTTATGGACCGAAAGCATTGACCTTCACACACTAGACTCATTCCCTGCAGTGAGGAAGCCGGCGCTGGAGAGGACAATATGCTGAGGTGGACAAACGGAAATACGCATTTTTAGCCGGCTGGGGATTGACTGTATAGCGTTAATCATGCCGGACTCCTCAGAAACCTCTTTACCCGCTTTCAGGCGTCTGAGTTACTCAGTGGGGCATTTTCTCAACGATCTGTGCGCCTCGATGTGGTTTACATACCTGCTGGTGTTTTATCACTCAGTGCTGGGCTTTCAGAACACATATGCGGGTGTATTGCTGTTGGTGGGGCAGATAGCGGATGGAGTGTGTACACCGCTCATCGGTTATGAGTCTGATAAGACACCCGGCTGTGGATCGTATGGGAAAAGAAAAACATGGCATTTAGTCGGGACCTTCAGCGTCCTCCTATCATTCCCCTTTATATTTAATCAGTGCCTGGGTTGTAATCTGAACACTCCACAATGGGTCAGTCTCACCTACTTCACCCCCTTCATCGTCATCTTCCAGTTTGGATGGGCGGCCACCCAGATTTCCCATCTCTCCCTCATTCCCGAGCTGGCGTCTTGCGAGCATGAGAAAGTGGAGCTCACTGCGTACAGGTATGCCTTTACCGTGATAGCCAACATCACAGTGTATGCAGTGGCCTGGCTCCTGTTTCATTTTCAGACTCAGGAAGGAGATGATCCTGCCATTGCAGACAATCTTGGCCCTGTTGACATTCCCGTTTTCAGAAATCTAGGTCTTATAGTGGTGGGCATTGGAGCTCTGTTCTCGCTGCTGTTTCACCTGGGCACACGGGAGAAGGGGGCACGTCCCAGTCAGGAGGAGGATGGCTCTAGTCCTGGGGAACGCCAGCCACTTCTTCACAACGCCACTGTTGTCCCTCCCACTAATCCACTGCAGTGGAAACATTGGCTGAGACAGCCATCATTCTACCAGGTGGCTGTGCTTTATATGTCCACCAGACTGATAGTAAACCTGTCACAAACGTACATTTCCATGTATCTCACCTACACACTACTGCTGCCAAAGAAGTACATAGCCACCATTCCCCTGGTGATGTTCCTGAGTGGCTTTGCTTCCTCATTTATCATGAAACCTCTCAGCAAGCTAATAGGCAAATGTATGACTTATTTTTTGGGACTGTTGCTGATTCTGGTGTTCTCCTATTGGGTGCTGGTGGACACACACATGGGAGAAAAGGTGTATGGGGCAGCGGTCCTGCTAGGGGTGGGGTCTGGCACCATCCTGGTGATGTCACTTGCCATGACGGCTGAACTCATAGGAGATCAGACACAAAGTGGGGCTTTTGTTTATGGAGCTATGAGCTTCACAGACAAGGTGGCTAATGGTCTGGGAGTCATGATCATTCAGGCACTACACCCCTGCCGCACAGTGGTATGCTGTTCGGCTTGCGTGTGGTATTACCACTATGTCATGGTCATCGTCACTGGTGGAGTGGCCGTTTTAGCAGCACTAAGCCTCTGCATGATCCTTATCTGGCCTATAAAGATTGTGCGCTATCTGCCTGAGGTGACTGGTCTTATGGGCAGTGATAGAGAGGACTCCGAGAGCTCTGAACAGCCTTCAGTCGACTGAACACACAGCAGCCGCAGAGATTCTTCAGCTCTGATAACCAGAGAACTCTGGTTTACACAGTGGTGAAGGTTAGAGTTAAAATCAGGTTTTGGTTCATAATAATCTTTCACACTGGCCAATATTTGCTAATTAAGTCTATAGAACGGTCACATCTTGCACGTTTCTACAATACAGGTTTCATCTTGTGTTCACTGAGAGCCAAAGATGTGAGTTTATTTTTAGACATGATTAGTTAATATCACTCCTCTTTTATATCATGGTTTATTATTTCTTAGCTCTCACTCGACCCAGCAGTCTTTATAGACACACACTTTATAAAGGGACTAATTTTGCTGTTGCACATTGTCATGTTTATCGTTTCAGAATTTTTTTTGTTTATGATTATAAATTTAGTTTAGTTATTTAAATCAAATCCATGAAAATAAGGGAATTTATTTAAATACCTGCCATAAAGGCCAATGCAAGATGCACATGTTATGGTGGATAAATTATTTCAAATTAATCCATCTAACTTTTCTATAAGGGAATTCATGAAAAGGGAAGAATTAATATTTTAAATCAGGGATATAAAGCCATGTTCATTTATTTTGGTGTGAGATACGTGGGGTTTTGCTGGTAGGGACCAGAGAGCCAATCATGTGCATTTTCCTCTATAACTACTAGTTTTTTTTTCCTTGTGTATTTTTTTATTTTTATATATGTATATATGCATAATTATGGTTTTCATATGTAAGACAATTGTGTCTGACATGTTTTCTGTTCATATCATTAACTGAACAGAATAAA

Function

symbol description
mfsd12a Predicted to enable symporter activity. Acts upstream of or within pigment accumulation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human MFSD12 (major facilitator superfamily domain containing 12).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06183916_06192361.mRNA True 3385 mRNA 0.42 10 6183130 6193478

Neighbor

gene id symbol gene type direction distance location
CI01000004_06121326_06137773 NA coding downstream 45357 6121286 ~ 6137773 (-)
CI01000004_06074774_06078306 RNF2.L, RNF2 coding downstream 103876 6074669 ~ 6079254 (-)
CI01000004_06016711_06021356 PTGS2, PTGS2A coding downstream 161774 6016382 ~ 6021356 (-)
CI01000004_05976527_05978831 PDCA coding downstream 203376 5975404 ~ 5979754 (-)
CI01000004_05942638_05967553 TPRA coding downstream 215577 5942604 ~ 5967553 (-)
CI01000004_06200669_06208703 CSNK1G2, CSNK1G2A coding upstream 6268 6199746 ~ 6208703 (-)
CI01000004_06221889_06232315 MKNK2, MKNK2A coding upstream 27320 6220798 ~ 6232315 (-)
CI01000004_06308316_06314451 AMOTL2B coding upstream 114788 6308266 ~ 6315005 (-)
CI01000004_06325293_06337484 NA coding upstream 131534 6325012 ~ 6337484 (-)
CI01000004_06339829_06343806 RAB6B.L, RAB6BB, RAB6BA, RAB6A, RAB6B, RAB6C, RAB41 coding upstream 145757 6339235 ~ 6343806 (-)
G29233 NA non-coding downstream 7230 6175696 ~ 6175900 (-)
G29172 NA non-coding downstream 137823 6044360 ~ 6045307 (-)
G29153 NA non-coding downstream 214001 5968478 ~ 5969129 (-)
G29132 NA non-coding downstream 339833 5839522 ~ 5843297 (-)
G29130 NA non-coding downstream 344828 5838097 ~ 5838302 (-)
G29208 NA non-coding upstream 91999 6285477 ~ 6298068 (-)
G29188 NA non-coding upstream 206161 6399639 ~ 6403721 (-)
G29385 NA non-coding upstream 434096 6627574 ~ 6627791 (-)
G29386 NA non-coding upstream 434498 6627976 ~ 6628269 (-)
G29387 NA non-coding upstream 435588 6629066 ~ 6629470 (-)
CI01000004_05617072_05627369 NA other downstream 555616 5616644 ~ 5628289 (-)
G27746 NA other downstream 979406 5178227 ~ 5203724 (-)
G26788 NA other downstream 2907409 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4408189 1772928 ~ 1774942 (-)
CI01000004_06539836_06541252 NA other upstream 341349 6538904 ~ 6541252 (-)
G29388 NA other upstream 437815 6631293 ~ 6631907 (-)
G29656 NA other upstream 1770886 7964364 ~ 7965500 (-)
G29746 NA other upstream 2161020 8354498 ~ 8358127 (-)
G30316 NA other upstream 3184459 9377937 ~ 9406921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location