CI01000004_06200669_06208703 (CSNK1G2, CSNK1G2A)


Basic Information

Item Value
gene id CI01000004_06200669_06208703
gene name CSNK1G2, CSNK1G2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6199746 ~ 6208703 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06200669_06208703.mRNA
CGGAGTAATCGTGGAGAGGCCGGGGTATCACAAGCTTATGGATTTTGATAAGAAAGGAGGAGGAGGAAAAGGTGAGGCTGAGGAAGGAAAGAGAATGTCTAAGACTGGCGGGAGCAGGACAGGGCATGGAGGTGGCCGAAACTCCAACTCCGGGGTGCTTATGGTTGGCCCTAACTTCCGAGTGGGAAAGAAGATCGGCTGTGGTAACTTTGGAGAGCTTCGACTCGGGAAGAATCTTTACACTAATGAATATGTGGCCATTAAACTGGAGCCAATCAAATCCAGAGCACCCCAGCTCCACCTCGAGTACAGGTTTTACAAACAGTTGGGCAACTCGGAGGGTGTTCCTCAGGTGTACTACTTTGGGCCTTGTGGGAAGTACAATGCCATGGTGCTGGAGCTGCTGGGCCCCAGTCTGGAGGACCTGTTTGACCTCTGCGACAGAACCTTTTCCCTCAAGACCGTCCTCATGATCGCAATTCAGCTGATCACACGGATGGAATATGTGCACACAAGAAGTCTGATCTACAGGGATGTTAAGCCAGAGAACTTCTTGGTGGGCCGACCGGGGACCAAGAGGCAACATACAATCCACATCATCGACTTTGGGCTTGCCAAAGAATACATTGACCCTGAGACCAAAAAACACATCCCTTACAGGGAGCACAAGAGCTTAACAGGGACAGCTCGCTACATGAGCATCAACACACACCTGGGAAAGGAACAAAGCAGGCGGGATGATTTGGAGGCGCTGGGTCATATGTTTATGTACTTCCTACGGGGCAGTCTGCCTTGGCAAGGCTTGAAGGCTGACACACTTAAGGAGCGCTATCAGAAAATTGGAGATACCAAAAGGGCAACCCCTATAGAAGTGCTCTGTGAGAGTTTCCCTGAAGAAATGGCCACCTACCTGCGCTATGTGCGGAGACTGGATTTCTTTGAAAAACCGGATTATGACTACTTGAGAAAACTCTTTACAGACCTCTTTGACAGGAATGGCTATGTCTTTGACTATGAATACGACTGGGTCGGCAAGCCGCTGCCGACTCCAATAGGACCCATGCCTAGTGACACACCTCTGCAACCCAGCAGCAGAGACAAAGCACAACCACAGACCAAAAACCAGACGCTGAATGCCATTCTTTTTGAGAGTGGTATTGCCATGTCTTGGTCACAGTCCCTTTAAATCTGTTACATTATACATTTTCTATGATTGGCTGGAGCTTAGCTTTCCTCTCCATCTCTGCATGTCACATGCTCTATTGTTTTTTCACTCACACTTTTATTTCCACCTCTATCCTGTTAGCTAGTGCAGTCTGCTTGTGCATGGAAGGCGTTCCTCTTTAAACTCTTTCTGTTCTTTTTTTCTTTGCACCCTCACCTCCTTTCAAAAACATCTATTATGCCCTTTGCCACCTTCCGACCCCTTTCCCCCTATTGCTGTCATGCCAGTCTCCAGAACCTAAAGGAAGTGAGTCCCAGCCCACTCCCGTGACCAACAGGGAGCTCCTGGGGTCGCACCTCACGGCCGATAGGCTGGGGGGCTCTGTCCAGGTACTGGGTGTTTGCGCAGTACTGCATGCTGTTGGTGTCGATATCTTCCTTTCTCTGTTCTCTAGTCTTTCTGTTCCTTTCGTCCTCTCACTTGAGACACCTCTGTCCATTTTCTAGCTGTGAACACTTAAATGATCTTTTCCTCTCTTCACCCTTGTCTAACACACATCACTTGCATGTTCCTGATGGTTAGGCTTGGGATCTGGTGACTTCAGTGTGAAAATACTGCTTATATTGTATACAAGTAGCTAAGCAAGACAAATGGATGTTTGCTTGTGTACATACAGTTATCCAGGGTGTAACTTTTCTTTTATAAAATTTTAGTGTTATAAGAATTCCAACTCATTTTCAGCTTATTTCCATTATCTAACCAAGCACCGTTCTTTCATTTTACATTCCCCCCTCCCCCCTTCTTCTTAACCTTCCTAGTTGGTGCTAAGCAACCTGATTTTGAACAGGTTAATTATTTAAAAAAAAGTGTCCTCAATGGGTTACTTAGCCCCAATTTGAGATACATGAACTGTTAAATATGCAGTGCCAGTTAGACAAAATAAA

Function

symbol description
csnk1g2a Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including Wnt signaling pathway; peptidyl-serine phosphorylation; and positive regulation of canonical Wnt signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm; nucleus; and plasma membrane. Is expressed in nervous system; otic vesicle; pectoral fin; presumptive neural retina; and solid lens vesicle. Orthologous to human CSNK1G2 (casein kinase 1 gamma 2).
csnk1g2 Enables protein serine/threonine kinase activity. Involved in peptidyl-serine phosphorylation. Located in membrane.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K08958 CSNK1G; casein kinase 1, gamma

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06200669_06208703.mRNA True 2109 mRNA 0.47 9 6199746 6208703

Neighbor

gene id symbol gene type direction distance location
CI01000004_06183916_06192361 MFSD12A coding downstream 6268 6183130 ~ 6193478 (-)
CI01000004_06121326_06137773 NA coding downstream 61973 6121286 ~ 6137773 (-)
CI01000004_06074774_06078306 RNF2.L, RNF2 coding downstream 120492 6074669 ~ 6079254 (-)
CI01000004_06016711_06021356 PTGS2, PTGS2A coding downstream 178390 6016382 ~ 6021356 (-)
CI01000004_05976527_05978831 PDCA coding downstream 219992 5975404 ~ 5979754 (-)
CI01000004_06221889_06232315 MKNK2, MKNK2A coding upstream 12095 6220798 ~ 6232315 (-)
CI01000004_06308316_06314451 AMOTL2B coding upstream 99563 6308266 ~ 6315005 (-)
CI01000004_06325293_06337484 NA coding upstream 116309 6325012 ~ 6337484 (-)
CI01000004_06339829_06343806 RAB6B.L, RAB6BB, RAB6BA, RAB6A, RAB6B, RAB6C, RAB41 coding upstream 130532 6339235 ~ 6343806 (-)
CI01000004_06345732_06359362 ESPNLB coding upstream 136918 6345621 ~ 6359521 (-)
G29233 NA non-coding downstream 23846 6175696 ~ 6175900 (-)
G29172 NA non-coding downstream 154439 6044360 ~ 6045307 (-)
G29153 NA non-coding downstream 230617 5968478 ~ 5969129 (-)
G29132 NA non-coding downstream 356449 5839522 ~ 5843297 (-)
G29130 NA non-coding downstream 361444 5838097 ~ 5838302 (-)
G29208 NA non-coding upstream 76774 6285477 ~ 6298068 (-)
G29188 NA non-coding upstream 190936 6399639 ~ 6403721 (-)
G29385 NA non-coding upstream 418871 6627574 ~ 6627791 (-)
G29386 NA non-coding upstream 419273 6627976 ~ 6628269 (-)
G29387 NA non-coding upstream 420363 6629066 ~ 6629470 (-)
CI01000004_05617072_05627369 NA other downstream 572232 5616644 ~ 5628289 (-)
G27746 NA other downstream 996022 5178227 ~ 5203724 (-)
G26788 NA other downstream 2924025 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4424805 1772928 ~ 1774942 (-)
CI01000004_06539836_06541252 NA other upstream 326124 6538904 ~ 6541252 (-)
G29388 NA other upstream 422590 6631293 ~ 6631907 (-)
G29656 NA other upstream 1755661 7964364 ~ 7965500 (-)
G29746 NA other upstream 2145795 8354498 ~ 8358127 (-)
G30316 NA other upstream 3169234 9377937 ~ 9406921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location