CI01000004_06308316_06314451 (AMOTL2B)


Basic Information

Item Value
gene id CI01000004_06308316_06314451
gene name AMOTL2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6308266 ~ 6315005 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06308316_06314451.mRNA
ATACAAGAGGAAAGAAAAAGTAAAAACATTTAGTACTTGAAAATATGCTTAAATATTTACCAGAGATGCCTAAATACACAAAGTTGATCTTCTAGCTCTGGTTATTATTCTTGTGTCAACACGTCTGCATACCTTTCAGATTGGGTCACACCTTTTGACACCTTTTCTCTGTTAAGGTGACATCACTGCTCAGCCTCTCTGTAGTAATACAGGGCTTTATGTTGCCATGGATTTTCTTTGACCAACTGGACCGTTTTCTTAAATTACAGGACTTTCAGTTAAAACCTAAGCTCTGGTATCTGCCTTCTGTGAAAGCCCCTGTGGACGAAAGTGGAACTGCAGCTGCTGTATTAAATGGCTCTTTTTTTCTCTTTTCACTTTTGATCCCTGAGCTCACACATTCCGATCATTCCAGGCGCGCTTAGTTATTTATGAGAGCAGAGCGCGCGCCTACCAGCTCATAACCCAACCAGACCTAAACACGCGCGCACAAACAAAACGAGGAGATAAAACACAAACAGAAGATATTAGTTGGATTACTTGGATTATTACACATGCCATTAACAGAATCCGTGTGGAATGAAAGTGGTAGCTGGTCCAGTTCAGTTCATAAATACTCATCTTCATCAAATAAAATGAGAGGTGAAGAAGCATCTGGTACTGTTCTGCACAGACTAATCCAAGAGCAGCTACGCTATGGAAACCCCACAGATGCCCGCACACTCCTGGCCATCCAGCAGCAGGCCCTGCGACGAGGAGGAGGTGTTGGATCTGGAGGGGCTTGTTCTCCACAGTCTTCATCTGAGAGCCTCAGCCCGGAGGAGCCCCAGTCTCCTCAGCTCTCTGCCCGCCAAGAACCCCAAGGTCAAGAGCACCAGGTTGACTACCAGCACTCTGAGAACTACACAACACACCCACACCATGAAGAGGAGCTACCCACCTATGAACAAGCAAAGGCCCAGTCTCAGTATTTGGCCTCCCAATGGTGCCAACCGCACAGGGGCTGCTCATTAGAGGATAGTGTAACAAGCCAGATGCCCTGTAAGGAGGAAGACAGCTGGGACCAAAAGCGAGCCCATGCACGGTCACCGAGTGAGCGGCTTCTGCAGTTTTCAATGGAGCACAATAAAATGCCTGCAACATATTCTGCCAGTTACCCTCAGATACATGGATATCATGCAAACCAGCACTTACAATATAGCCAGCAAGGACTGGAATACAATAAGCAGGTGCCTTATACTGAGCACCCCTTTCCTGTGCGACAAGCAGCGGAGTATGAACCGTGCTACAAAGCACCACCACCATTTCATTCCCAGCACAACAGACTTCAAACACCAGAAGTTTGCCATAGTCTCTCCACATCTCCCCCTGCTGGCAGGGAGGTCGCAGCTTGCAGTCGCATCCAACTGGAAATGCTCATGAACGAGAATAAGAGATTGAGACAGGAGCTAGAGGGACACACTGAGAAAGGCCTCAGAATTCAGAAGCTGGAACAAGAGATCCAAAGGATTTCAGAGGCCTACGACACTCTGATGAAGGGCTGTGCAAAAAGAGAAACTCTGGAGCAAGCGCTAAGAAACAAGCTGATGGCTGAGATCAAGAGGCTGCAGCAATCAAGCATTCAAGCGGCAAAAGAAGCCGAAGCTGCTGACCAGAACCAGCATGTTATTGAGAAGCTCCTTCTGCAAAATGAAGAACAGCAGCTGCAGTGTGCACATCTGGAGCAGGAGGTTCAGCATCTGCGAAACGAAGCTGAGAACCAGCAGCGCAGGAGTGAGGCCCTGGAGAGCACCCTGAGGTCCACACAGACACGCAGCCAGCAACTGTGGATGGAGCTGCAGAGGAAGAGAGCGTATGTGGAGAAGGTTGAGCGTCTGCAAAAGGCTTTGGCTCAGCTGCAAGCAACATGCGAAAAAAGAGAAGGGTTGGAAACGCGCCTAAGGACACGACTAGAGCAGGAACTGCGGAGCCTCCGAAATCAGCAGCGGCAGCCTCAGCCAGTCGGAGGAGTGTCCAATGTGAGTGTGTCCACACTGCAGGAACTTCTGCGGGAGAAAGAAGAGCGCATTTTGTCCCTGGAAGCTGACAAGATGCGCTGGGAGCAGAAATACCTGGAGGAGCAAACCATGAGGGAGTTTGCAATGGATGCTGCTGCCACTGCTGCAGCTCAGAGAGACACAACCATCATCAACCATTCACCCTGTCATTCCTTCATTGAGGAGTTCCCATCATCTGAGATCAGAAACCAGGAAGTTGAAAACAGGATCCGTGCCCTGTATGCTCAAATCCTGGAGAAGGACACCGTGATTAGCGTCCTGAAGCAGAAGCTGCAGCAGGATCAGAAGGGAGAGTCAGGTGACTTCCGGCCAGCTACTACTGAGCCCTCCATCACCATCTCTCATTCAACGTTCACACACATGGCCCACGGCAAAGGGAAGAGTCAATCCAATGACCAGGCGGCTGGTACGTCTTATTCCACGCTCACTCCGGTAGCAGCCCGGGGACAACCTGATCTAGTTCTGTCAGAGAAACAGACAACAGATCAAGCCCCCTGCACAGAGCCCAACCCCAATAACATCCAGAAAGCACCATCTGCTGTGGACCTTTTTAAGGGCCTAGATGATGTGGCGGCTGATGCAGTGGAGATCTTCATTTGATGACGCACACTTGGACAAGGCATGCAGGACAAACTGTCCTGCAAAATAAA

Function

symbol description
amotl2b Acts upstream of or within actin cytoskeleton organization; dorsal aorta morphogenesis; and regulation of cell shape. Predicted to be active in bicellular tight junction; cytoplasmic vesicle; and plasma membrane. Is expressed in ectoderm. Orthologous to human AMOTL2 (angiomotin like 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06308316_06314451.mRNA True 2707 mRNA 0.50 10 6308266 6315005

Neighbor

gene id symbol gene type direction distance location
CI01000004_06221889_06232315 MKNK2, MKNK2A coding downstream 75951 6220798 ~ 6232315 (-)
CI01000004_06200669_06208703 CSNK1G2, CSNK1G2A coding downstream 99563 6199746 ~ 6208703 (-)
CI01000004_06183916_06192361 MFSD12A coding downstream 114788 6183130 ~ 6193478 (-)
CI01000004_06121326_06137773 NA coding downstream 170493 6121286 ~ 6137773 (-)
CI01000004_06074774_06078306 RNF2.L, RNF2 coding downstream 229012 6074669 ~ 6079254 (-)
CI01000004_06325293_06337484 NA coding upstream 10007 6325012 ~ 6337484 (-)
CI01000004_06339829_06343806 RAB6B.L, RAB6BB, RAB6BA, RAB6A, RAB6B, RAB6C, RAB41 coding upstream 24230 6339235 ~ 6343806 (-)
CI01000004_06345732_06359362 ESPNLB coding upstream 30616 6345621 ~ 6359521 (-)
CI01000004_06365131_06390103 KIF1AB, KIF1A, KIF1AA coding upstream 49611 6364616 ~ 6390103 (-)
CI01000004_06406371_06415282 NA coding upstream 91366 6406371 ~ 6416418 (-)
G29208 NA non-coding downstream 10198 6285477 ~ 6298068 (-)
G29233 NA non-coding downstream 132366 6175696 ~ 6175900 (-)
G29172 NA non-coding downstream 262959 6044360 ~ 6045307 (-)
G29153 NA non-coding downstream 339137 5968478 ~ 5969129 (-)
G29132 NA non-coding downstream 464969 5839522 ~ 5843297 (-)
G29188 NA non-coding upstream 84634 6399639 ~ 6403721 (-)
G29385 NA non-coding upstream 312569 6627574 ~ 6627791 (-)
G29386 NA non-coding upstream 312971 6627976 ~ 6628269 (-)
G29387 NA non-coding upstream 314061 6629066 ~ 6629470 (-)
G29391 NA non-coding upstream 340218 6655223 ~ 6656385 (-)
CI01000004_05617072_05627369 NA other downstream 680752 5616644 ~ 5628289 (-)
G27746 NA other downstream 1104542 5178227 ~ 5203724 (-)
G26788 NA other downstream 3032545 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4533325 1772928 ~ 1774942 (-)
CI01000004_06539836_06541252 NA other upstream 219822 6538904 ~ 6541252 (-)
G29388 NA other upstream 316288 6631293 ~ 6631907 (-)
G29656 NA other upstream 1649359 7964364 ~ 7965500 (-)
G29746 NA other upstream 2039493 8354498 ~ 8358127 (-)
G30316 NA other upstream 3062932 9377937 ~ 9406921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015406 amotl2b coding NC_007113.7 CM002886.2 22851832 ~ 22861178 (+)