CI01000004_06406371_06415282


Basic Information

Item Value
gene id CI01000004_06406371_06415282
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6406371 ~ 6416418 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06406371_06415282.mRNA
ATTTCATCCTACCTGTCAGATTGTCCTACCCGGGCTAACTGCACGTGCGCTCATCAATATTACATCATTTTTGTCATGATAAATAACACAAAATGACTGTATTTGCATTGTTGGAAGTGTAGGTTTAGAGTTGGGGTAGGTTCAGACATTAATAAAGCACAGTCTGATAGGTAGCATTTTTCACTGTCGATTTGCACTATATCAGATTTTGCCTAATTTGCTATGGTTTAATGGCATTACTTAAGTTAAATTGCTGCATTACTTATAAATAGATTTGATATTATACGTATTAGAGAATGTTCTGTCTTAAATGGCACTTTTATTATATTAGGTTTTACCGCAGATACATTGTTTTTGACAAATTTGCTACATTAAACGTGTAACATTAGTTAATTCATATCAGATATTACCAGTAAACAAAGTCAATTTTAAGACAATTTTATGTTAATTATTGCTACATTATGTAACCATCTGTGAGTGAACATAAGCTGAGTCATTGCCAGAAGTGGCCAGATCTCTATAGCCGGAGTTGGGCCAGTTATGGTAAACAGGAATCGGCCCAGTGCTTTACAGCCGTAACAAATATACATGTACCAGAGTGATCTACGGGCCACAGTCGGCCAGGTTAACACACGCCGATGCCGAGTCTGAGCCACAGGCGCCGCGGGGCAGCCGAGCTCGGGCCGATTACTACATGCTATCTGGGTTGAAGAAACTTGAGAAACATTATGTCAACTAAAATAAAAAAAATATACATAAAGAAATTAAAAACAGAATGCTACAGTTTGTTTTCGTGAATTTACTTTAATTTGTATTTTTAATTTTAAAATAATTTTAATTTACTATTACTTTTTAAAAAAAAGCTGTTTATGTGTTGTTTATAGTAGAAAAATATGATCAAACTGTGACAATCCAATATAACATACGCGATTTATTGATTTTATTAAAATTTATTTTAAATTGTCCTTATATTTTATATTTTAATTTTATACCTTAATTTTATGGTCTGCGGTATCTCTTCAGCACATTATATTGCCCTCTAGCGATATAATTAGTGTTAAGTTATCTTGTGAGTGAGTTCATTGGTCAGTCGGGTTATCAGTAATGAGAGTGAGTTCAACCGCCTCGAATTCATCATGGCTACGGGGCTTGGTGAGTTTCTGCGTAATTTAAGACAAGGCCTCGTGAAAACTGAAGAAACTACTAGTGGAGAGGCTCAGAAAGAGGAAACTGCGCGTGCTGAAGGTGCAAGAAGGTTGCCTTCTGAGATCATCCTGAAGATTTGCTCTTTTCTGGATGCCTCGTCTCTGTTCAATATCAGCTTTGTCAACAAGCGGTTTCATGATCTGGCCAACAGCAATGCTCTGTGGTCTGTGTTGTATGCTTCTGAGTTTGAGAAGAAAAAGTGGAGACCCCGAGTAAGAATTATGACAGAAGCTGTGAGCAGCACAAGTGTGGAAGAGAAACCTGCGGGATACTGGAAGAAGCTGCTACTCAAGGAAATGGCTGGCTACAAGGACACCATGTGGAAAACAGAGCTAAGACACATGAACCCGCACACAGGCATGCCAGCTCTAACAGAGCAAGTTCTCAGGAGGTTACACATTCAGTGGGAGATCACGCTCACAAAAAAGAATGGACGTGAAAGTGTCCATAAGCAGTCGCACATTTTCTTCGAAGATTCCTCGGTTACGGTGTGCTGGAGCCGTGGTGTCTGGCCGTACATGAGCAGTCTTGAGGGCCTGCAGCTTCATGGAATAATGTGTCCAGCCCTACCTGGTCCAGGAGACAAGCCAAGGTGGCGCTCTCTGATTCACAAGACAAGTTTAAGTAGAAGTATACCCTGGTCATTCCTTGGTGCTGACAAGCTTGTGAAATTGCTGAATTTGAATAAGGGCATCATTGTCGGAGTCTGGCGGGTCTGGACATCTGTCATTACCAGCATTACCTTCTCTTGCTTGGATATTCCGCTTTCAACATCAGTTACCAACCTGGATGTTAAAATGGTCTCTCATCTGACATTTGAGGCCCACATCAAACATCTGTGCAAGACCTCTTTCTTCCACCTTAGGAACACTGCCAAACTCCAGGCTAGACTACTGCAATGCGCTCTGCATCGAGATCCCAGGCAAAAGCCTCCAGAAGCTGCAGTACATTCAGAACAGCGCTGCTTGGATCCTGATGAGGAATTGAATGCAAAGTTTCCCTCTTCACCCACCAGTGTATCCATGGGCAATTGGAAAATTGCCTTTATCATGGTCAACCTACACTTCCACAAACTGATTGAAAGAAGTCTCCTTGGGTCAAGATTTTGTCCCTACGTACCCACGGGTGGCACTGCTGCGGACCCTGACTGTGGACGCCATGGATACACTCTGCACATTGTGCTTCACAATCCAGTTCGGCGAATCATGTGTCAGCATTTTTCCCCACTCTACACCAGCAGAGTGCCGTTTCAAGAGGACTATGTGCAGTTAATCGCCATTAATTTGGCTGATGTGCCTAAGCACAAGCCTGTGGCAAAGATCAGTCTCCCATGGCAAGCAGAAGGAGTGCAGGGAGATGTTGAG

Function

NR:

description
Zgc:161973 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06406371_06415282.mRNA True 2570 mRNA 0.42 10 6406371 6416418

Neighbor

gene id symbol gene type direction distance location
CI01000004_06365131_06390103 KIF1AB, KIF1A, KIF1AA coding downstream 16268 6364616 ~ 6390103 (-)
CI01000004_06345732_06359362 ESPNLB coding downstream 46850 6345621 ~ 6359521 (-)
CI01000004_06339829_06343806 RAB6B.L, RAB6BB, RAB6BA, RAB6A, RAB6B, RAB6C, RAB41 coding downstream 62565 6339235 ~ 6343806 (-)
CI01000004_06325293_06337484 NA coding downstream 68887 6325012 ~ 6337484 (-)
CI01000004_06308316_06314451 AMOTL2B coding downstream 91366 6308266 ~ 6315005 (-)
CI01000004_06419749_06423949 BOKB coding upstream 2769 6419187 ~ 6423987 (-)
CI01000004_06441871_06454719 SEPT2 coding upstream 25058 6441476 ~ 6455013 (-)
CI01000004_06470183_06483783 HFM1 coding upstream 53765 6470183 ~ 6483783 (-)
CI01000004_06497733_06501592 LRRC8D, LRRC8DA coding upstream 81287 6497705 ~ 6501592 (-)
CI01000004_06510788_06533217 PKN2 coding upstream 93982 6510400 ~ 6533382 (-)
G29188 NA non-coding downstream 2650 6399639 ~ 6403721 (-)
G29208 NA non-coding downstream 108303 6285477 ~ 6298068 (-)
G29233 NA non-coding downstream 230471 6175696 ~ 6175900 (-)
G29172 NA non-coding downstream 361064 6044360 ~ 6045307 (-)
G29153 NA non-coding downstream 437242 5968478 ~ 5969129 (-)
G29385 NA non-coding upstream 211156 6627574 ~ 6627791 (-)
G29386 NA non-coding upstream 211558 6627976 ~ 6628269 (-)
G29387 NA non-coding upstream 212648 6629066 ~ 6629470 (-)
G29391 NA non-coding upstream 238805 6655223 ~ 6656385 (-)
G29402 NA non-coding upstream 353944 6770362 ~ 6770583 (-)
CI01000004_05617072_05627369 NA other downstream 778857 5616644 ~ 5628289 (-)
G27746 NA other downstream 1202647 5178227 ~ 5203724 (-)
G26788 NA other downstream 3130650 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4631430 1772928 ~ 1774942 (-)
CI01000004_06539836_06541252 NA other upstream 118409 6538904 ~ 6541252 (-)
G29388 NA other upstream 214875 6631293 ~ 6631907 (-)
G29656 NA other upstream 1547946 7964364 ~ 7965500 (-)
G29746 NA other upstream 1938080 8354498 ~ 8358127 (-)
G30316 NA other upstream 2961519 9377937 ~ 9406921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G221219 NA unknown NC_053133.1 CM020930.1 19999113 ~ 20003372 (+)
striped catfish (Pangasianodon hypophthalmus) G252893 NA non-coding NC_047610.1 CM018556.1 10945080 ~ 10946913 (+)