CI01000004_06441871_06454719 (SEPT2)


Basic Information

Item Value
gene id CI01000004_06441871_06454719
gene name SEPT2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6441476 ~ 6455013 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06441871_06454719.mRNA
ACATGTGATTTACATTGATTTATATGGTCTCTGTCTGTCCCCGAGTTCTTATCATTATGCCTGGGGTATTTCATCATGTTTGAGTCCCAGCTGTGTCAAAACCTATGCTTCACTTTTACAAATATATATGTATATATATATAATATGTCTAAATCAGTGATTCTCAGCCTTTTTGACTCCAAGACCCTCCAGTGTCCATAATAATATTCAATGGCCCCATAACGTTTTTTTTCAAAGACCCCATGAGTTTTTTCTTGCACTGCATTCAAAAATACTTGCTTTATTTGAATTAAAATGAGTAAACAGCCTTTAGTGCTCTTACTGGTTCATGTAAAATGGCTGGTGCAGGTTTGGTTCGAGCTCAAAATGTCTCAAGCTGAAAAACTCAAGCAGGGACAGTTTACAAACCCAGAGACTCCTGGATATGTGGGGTTTGCGAATTTGCCAAATCAGGTGCACCGGAAATCCGTGAAAAAGGGCTTTGAGTTCACTCTCATGGTGGTGGGTGAGTCGGGTTTGGGGAAGTCCACGCTTATCAACAGCTTGTTCCTCACTGATCTCTACCCAGAGAGGGTCATTCCTGGTGCTGCAGAGAAAATTGAGCGCACTGTGCAGATCGAGGCTTCAACGGTGGAGATCGAGGAGCGTGGAGTGAAGCTGCGTCTCACTGTGGTCGACACGCCTGGATACGGTGACGCCATCAACAGCCAGGACTGTTTTAACACCATTATCTCATACATCGATGACCAGTTTGAGCGCTACTTGCATGACGAGAGCGGACTCAATCGCAGGCACATTGTGGACAACCGTGTACACTGCTGCTTCTATTTCATTTCCCCTCTGGGTCACGGACTGAAGCCTCTAGATGTCCAATTCATGAAGGCCATTCACAACAAAGTGAATGTTGTTCCTGTTATTGCTAAAGCAGATACGCTGACACTGAGGGAGAGAGAGAGACTCAAGCGCAGAATTCTGGATGAAATAGATGAACATGGCATTAAGATCTATCACCTCCCTGATGCTGAGTCCGATGAGGATGAAGATTTCAAAGAGCAGACCAGGATTCTCAAGGCCAGCATACCGTTTGCCGTGGTGGGATCCAACCAGCAGATTGAGGCTAAAGGGAAGAAAGTGAGAGGACGTTTGTATCCATGGGGTGTGGTGGAGGTGGAAAACCCAGAACACAACGACTTCCTTAAACTTCGCACCATGCTGATCACCCACATGCAGGACCTGCAGGAAGTCACTCAGGACCTTCACTATGAGAACTTCCGCTCGGAGCGCCTCAAACGGGGCGGCAGGTTGTCATCCCATGGTTACATTCTGCCTCTGTCGCCTGCGTACGTACTGCTTTGCCTGTCTTTCTCCACCTCCTCCCTCAACCTCTATGAAACAGCAGAGCTTTTCTCATGGATCTGCAGCGAGCTGTGGGATCTGTGTTCATCAGAGGATAGGAGGGGGAGGAAGGGTCCGGAGCCAGAGGAAATGGACAAGGATATGATCTTGCAGGAGAAGGAGGCTGAGCTGAGGCGGATGCAGGAGATGATCGCTAAGATGCAGGCGCAGATGCAGAAGCAGGGAGATGAATGAGACAGCCCACACCTGTGAGAAACACGGTAAGAGCACATTACAAACACAGACGTTAAAGCAAGCAAGCCGTGCCTTATCTCGGATTTTGCTGTTGCAGTTGTAAGTTGAGGTCTTCCAAAAAAACAAAACAAAAAATCCCAGTTCAACATAACCAAATCTGTGGTCATGGTACTGTCTCTGACACATTGTATAAGCAGTTCTGCGATCTGAGCTGCTATAACATTTGATGTTATATTTGATATTGCTGCCTTTTAGTCTCTTTTACTTTGTAAAAATGTAATATTTTGTTAATGTTTTTGAATGCAAATCTATGTATGTTGCATATCTTGAAATATAATTTAATATTGAGTCACTTGTGTTTCAGAGAAAATTGGCAATTTATTTTTGGTATTAAA

Function

symbol description
sept2 Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in several processes, including cilium assembly; cytoskeleton-dependent cytokinesis; and regulation of exocytosis. Predicted to act upstream of or within cell division. Predicted to be located in several cellular components, including ciliary membrane; cleavage furrow; and midbody. Predicted to be part of septin complex. Predicted to be active in cell division site; cytoskeleton; and synaptic vesicle. Is expressed in artery; notochord; and vein. Orthologous to human SEPTIN2 (septin 2).

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16942 SEPT2; septin 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06441871_06454719.mRNA True 1985 mRNA 0.45 13 6441476 6455013

Neighbor

gene id symbol gene type direction distance location
CI01000004_06419749_06423949 BOKB coding downstream 17489 6419187 ~ 6423987 (-)
CI01000004_06406371_06415282 NA coding downstream 25058 6406371 ~ 6416418 (-)
CI01000004_06365131_06390103 KIF1AB, KIF1A, KIF1AA coding downstream 51373 6364616 ~ 6390103 (-)
CI01000004_06345732_06359362 ESPNLB coding downstream 81955 6345621 ~ 6359521 (-)
CI01000004_06339829_06343806 RAB6B.L, RAB6BB, RAB6BA, RAB6A, RAB6B, RAB6C, RAB41 coding downstream 97670 6339235 ~ 6343806 (-)
CI01000004_06470183_06483783 HFM1 coding upstream 15170 6470183 ~ 6483783 (-)
CI01000004_06497733_06501592 LRRC8D, LRRC8DA coding upstream 42692 6497705 ~ 6501592 (-)
CI01000004_06510788_06533217 PKN2 coding upstream 55387 6510400 ~ 6533382 (-)
CI01000004_06539836_06541252 NA coding upstream 83891 6538904 ~ 6541252 (-)
CI01000004_06547877_06549227 NA coding upstream 92377 6547390 ~ 6549227 (-)
G29188 NA non-coding downstream 37755 6399639 ~ 6403721 (-)
G29208 NA non-coding downstream 143408 6285477 ~ 6298068 (-)
G29233 NA non-coding downstream 265576 6175696 ~ 6175900 (-)
G29172 NA non-coding downstream 396169 6044360 ~ 6045307 (-)
G29153 NA non-coding downstream 472347 5968478 ~ 5969129 (-)
G29385 NA non-coding upstream 172561 6627574 ~ 6627791 (-)
G29386 NA non-coding upstream 172963 6627976 ~ 6628269 (-)
G29387 NA non-coding upstream 174053 6629066 ~ 6629470 (-)
G29391 NA non-coding upstream 200210 6655223 ~ 6656385 (-)
G29402 NA non-coding upstream 315349 6770362 ~ 6770583 (-)
CI01000004_05617072_05627369 NA other downstream 813962 5616644 ~ 5628289 (-)
G27746 NA other downstream 1237752 5178227 ~ 5203724 (-)
G26788 NA other downstream 3165755 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4666535 1772928 ~ 1774942 (-)
G29388 NA other upstream 176280 6631293 ~ 6631907 (-)
G29656 NA other upstream 1509351 7964364 ~ 7965500 (-)
G29746 NA other upstream 1899485 8354498 ~ 8358127 (-)
G30316 NA other upstream 2922924 9377937 ~ 9406921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009188 sept2,LOC102290758,LOC102196852,LOC101486671 coding CM030126.1 CM030126.1 28489056 ~ 28505796 (+)