Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000004_06470183_06483783 |
| gene name | HFM1 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 6470183 ~ 6483783 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| hfm1 | Predicted to enable DNA helicase activity. Predicted to be involved in resolution of meiotic recombination intermediates. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 9. Orthologous to human HFM1 (helicase for meiosis 1). |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000004_06470183_06483783.mRNA | True | 3195 | mRNA | 0.45 | 27 | 6470183 | 6483783 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_06441871_06454719 | SEPT2 | coding | downstream | 15170 | 6441476 ~ 6455013 (-) |
| CI01000004_06419749_06423949 | BOKB | coding | downstream | 46196 | 6419187 ~ 6423987 (-) |
| CI01000004_06406371_06415282 | NA | coding | downstream | 53765 | 6406371 ~ 6416418 (-) |
| CI01000004_06365131_06390103 | KIF1AB, KIF1A, KIF1AA | coding | downstream | 80080 | 6364616 ~ 6390103 (-) |
| CI01000004_06345732_06359362 | ESPNLB | coding | downstream | 110662 | 6345621 ~ 6359521 (-) |
| CI01000004_06497733_06501592 | LRRC8D, LRRC8DA | coding | upstream | 13922 | 6497705 ~ 6501592 (-) |
| CI01000004_06510788_06533217 | PKN2 | coding | upstream | 26617 | 6510400 ~ 6533382 (-) |
| CI01000004_06539836_06541252 | NA | coding | upstream | 55121 | 6538904 ~ 6541252 (-) |
| CI01000004_06547877_06549227 | NA | coding | upstream | 63607 | 6547390 ~ 6549227 (-) |
| CI01000004_06555703_06558890 | HS2ST1, HS2ST1A, HS2ST | coding | upstream | 71694 | 6555477 ~ 6558890 (-) |
| G29188 | NA | non-coding | downstream | 66462 | 6399639 ~ 6403721 (-) |
| G29208 | NA | non-coding | downstream | 172115 | 6285477 ~ 6298068 (-) |
| G29233 | NA | non-coding | downstream | 294283 | 6175696 ~ 6175900 (-) |
| G29172 | NA | non-coding | downstream | 424876 | 6044360 ~ 6045307 (-) |
| G29153 | NA | non-coding | downstream | 501054 | 5968478 ~ 5969129 (-) |
| G29385 | NA | non-coding | upstream | 143791 | 6627574 ~ 6627791 (-) |
| G29386 | NA | non-coding | upstream | 144193 | 6627976 ~ 6628269 (-) |
| G29387 | NA | non-coding | upstream | 145283 | 6629066 ~ 6629470 (-) |
| G29391 | NA | non-coding | upstream | 171440 | 6655223 ~ 6656385 (-) |
| G29402 | NA | non-coding | upstream | 286579 | 6770362 ~ 6770583 (-) |
| CI01000004_05617072_05627369 | NA | other | downstream | 842669 | 5616644 ~ 5628289 (-) |
| G27746 | NA | other | downstream | 1266459 | 5178227 ~ 5203724 (-) |
| G26788 | NA | other | downstream | 3194462 | 3267683 ~ 3275721 (-) |
| CI01000004_01773383_01774888 | INSL5B | other | downstream | 4695242 | 1772928 ~ 1774942 (-) |
| G29388 | NA | other | upstream | 147510 | 6631293 ~ 6631907 (-) |
| G29656 | NA | other | upstream | 1480581 | 7964364 ~ 7965500 (-) |
| G29746 | NA | other | upstream | 1870715 | 8354498 ~ 8358127 (-) |
| G30316 | NA | other | upstream | 2894154 | 9377937 ~ 9406921 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00004910 | NA | coding | CM030140.1 | CM030140.1 | 9149512 ~ 9198176 (+) |
