CI01000004_06497733_06501592 (LRRC8D, LRRC8DA)


Basic Information

Item Value
gene id CI01000004_06497733_06501592
gene name LRRC8D, LRRC8DA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6497705 ~ 6501592 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06497733_06501592.mRNA
CGTCTACAGCAATATGAGAATCAAGATAACAGCGCGTGCTCTTCCATCCCAGTGAAAAACGTCAGCAGAGACAGGATGTTTAGTCTCACTGAAGTTGCCTCCCTTAATGACATTCAGCCAACCTATCGTATTCTGAAACCATGGTGGGATGTGTTCATGGATTATATCGGGGTGGTAATGTTGATGTTAGCCATCTTTTCCGGGACTATGCAGTTATCCAAAGACCAAGTGGCATGTCTTCCCATTCTTGAGAAAAACACTGAGGCAACACAAAATCGACCAGAATGTTCAACATCCCTTCTGGGGACTGGACCCACAACAACTAAAGACCTTCCTGACAGCATTGCACATGAAATTCTTAACACTCAACCTACCCCCTTAAAAGGAGAAGGTATGTGGTCTCAACCTGAGCCCAGAGGACGTAAAACAAACCTGGACTATCAGCAGTATATTTTTGTCAACCAAATGTGCTACCATGATGCCCTACCGTGGTATAACAAATACTTTCCTTACCTTGCCCTCATACACACCATAATGCTGATGGTAAGCAGCAATTTTTGGTTCAAGTACCCAAAGACCAGCTCAAAGATTGAACACTTTGTTTCCATTTTGGGGCGGTGCTTTGAATCGCCATGGACAACGAAAGCTTTGTCCGAAACCGCTTGTGAAGATTCTGAGGAAAACAAGCAAAGATTCACAGGCGGTGCGGTTTTCCAGAAACATGTATCCTCGGAGGACAGCAGTCAGTCTACTCCTTTGATGGAAACTCCAACAGTGCAGTTTCCTACCGAAAAGCTCATTGCGGAAGCTCCCAGCCTGACCACGTTAGACAAAAAAGATGGAGAACAAGCCAAGGCTCTTTTTGAGAAAGTGCGAAAATTTCGAGCTCACATCGAAGACAGTGACTTCATCTACAAACTCTATGTGGCTCAGACAGCAATAAAAGCACTGAAGATCATTTTGATTTTGAGCTATACGTCAACGTTTGCCGCAAAGATCAGTTTCTGCCATATATGCAAACCTGAAATCGAAAGTTTGACTGGGTATGATCAGTTCGTTTGCACGCACAACATGGCATTCATGTTAAGGAAACTTCTCTTCACCTTCATGGCTATGATATGTCTCTATGGACTGGTGTGTTTGTATACACTCTACTGGCTCTTCAGGAGACCACTTAAGGAGTACTCTTTTGAAAAAGTCAGAGAGGAAAGTAGCTTTAGTGATATTCCTGATGTCAAGAATGACTTTGCATTTCTCCTACACATGGTCGACCAATACGATCAGCTGTACTCCAAACGATTTGGCGTATTTCTTTCTGAGGTTAGTGAGAACAAACTACGAGAAATTAGCCTTAACCACGAGTGGACGTTTGAAAAACTACGTCAGCATGTAACATCCAATGCTCAAGATGAACAAGAACTACACCTCTTTATGCTCTCAGGACTCCCTAATGCGGTATTTGACCTCACTGATCTGGAAATCCTCAAGTTAGAGCTTATTCCTGAGGTCAGGATTTCAGCCAAAGTTTCTCAGATGACCAACCTACGGGAACTACATCTATATCACTGCCCTGCTAAAGTCGAACAAACCGCTTTCACTTTTCTCCGTGACCATCTGCATCGCCTTCACATTAAGTTTACTGATGTTGCAGAAATCCCAGCGTGGATTTATCTGTTGAGGAGCCTCAAGGAACTAAACCTGATTGGGAACTTGAACTCTGAACACAACAAGATGATCGGTTTGGAGTCACTGAGAGATCTGAGACACTTAAGGATGTTGTATCTCAAAAGCAATCTCAACAAAATACCCACAAATCTAACAGAACTGTCACCACATCTCGTCAAACTGGTGATACACAATGATGGGACTAAATTACTGGTACTGAACAGTCTCAAGAAGATGACCAGCCTGGTTGATTTGGAGCTCCAGAACTGTGATTTGGAGAGGATCCCCCATGCCATCTTTAGCTTGGCTAGCTTGCAAGAACTGGATTTGAAGAATAACAATATCCGGACCATTGAGGAAATCATCAGCTTTCAGCACCTGAGAAGATTGGCGTGTCTCAAGCTGTGGTACAACAAGATCACTGCCATTCCACCATCGATAGTCCTAGTGAAGAGTCTGGAGTCCCTCATTATCTGTCACAATAAACTGGAGACCCTTCCTCCAGCTTTGTTTCATCTGCCCAAACTGAGGCACATTGACCTCAGCCACAACTCCATCTCAAGTATACCAGTGGAGATTGGACACCTTCACAACCTTCAACATTTTGCTATCACAGGGAACAAGGTAGAAGTTCTGCCTAATCAACTGTTCAAATGTTCCAAACTGAAGGTTTTACTTGTGGGTCATAACGGCATCACCTCCATCCCAGACTCCATTGGGCAGTTAACTCAGTTGTCCCAGCTTGAGCTCAAAGGGAACTGCTTAGATTGCCTTCCATTCCAACTTGGCCAATGTCACCTTCTTCGGAAAAACCTCTTCTTCGTGGAGGATCATCTTTTTGACACACTGCCTCTTGAGGTCAAGGAAAGTATCAGTAGTGACTAACGGAACTCTTCAGAATGGATTTAATTAA

Function

symbol description
lrrc8da Predicted to act upstream of or within ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; pancreatic bud; polster; ventral mesenchyme; and yolk syncytial layer. Orthologous to human LRRC8D (leucine rich repeat containing 8 VRAC subunit D).
lrrc8d Enables volume-sensitive anion channel activity. Involved in cellular response to osmotic stress; organic acid transport; and protein hexamerization. Located in cytoplasm and plasma membrane. Is integral component of plasma membrane. Part of ion channel complex.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06497733_06501592.mRNA True 2578 mRNA 0.44 2 6497705 6501592

Neighbor

gene id symbol gene type direction distance location
CI01000004_06470183_06483783 HFM1 coding downstream 13922 6470183 ~ 6483783 (-)
CI01000004_06441871_06454719 SEPT2 coding downstream 42692 6441476 ~ 6455013 (-)
CI01000004_06419749_06423949 BOKB coding downstream 73718 6419187 ~ 6423987 (-)
CI01000004_06406371_06415282 NA coding downstream 81287 6406371 ~ 6416418 (-)
CI01000004_06365131_06390103 KIF1AB, KIF1A, KIF1AA coding downstream 107602 6364616 ~ 6390103 (-)
CI01000004_06510788_06533217 PKN2 coding upstream 8808 6510400 ~ 6533382 (-)
CI01000004_06539836_06541252 NA coding upstream 37312 6538904 ~ 6541252 (-)
CI01000004_06547877_06549227 NA coding upstream 45798 6547390 ~ 6549227 (-)
CI01000004_06555703_06558890 HS2ST1, HS2ST1A, HS2ST coding upstream 53885 6555477 ~ 6558890 (-)
CI01000004_06569673_06570071 NA coding upstream 68004 6569596 ~ 6570171 (-)
G29188 NA non-coding downstream 93984 6399639 ~ 6403721 (-)
G29208 NA non-coding downstream 199637 6285477 ~ 6298068 (-)
G29233 NA non-coding downstream 321805 6175696 ~ 6175900 (-)
G29172 NA non-coding downstream 452398 6044360 ~ 6045307 (-)
G29153 NA non-coding downstream 528576 5968478 ~ 5969129 (-)
G29385 NA non-coding upstream 125982 6627574 ~ 6627791 (-)
G29386 NA non-coding upstream 126384 6627976 ~ 6628269 (-)
G29387 NA non-coding upstream 127474 6629066 ~ 6629470 (-)
G29391 NA non-coding upstream 153631 6655223 ~ 6656385 (-)
G29402 NA non-coding upstream 268770 6770362 ~ 6770583 (-)
CI01000004_05617072_05627369 NA other downstream 870191 5616644 ~ 5628289 (-)
G27746 NA other downstream 1293981 5178227 ~ 5203724 (-)
G26788 NA other downstream 3221984 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4722764 1772928 ~ 1774942 (-)
G29388 NA other upstream 129701 6631293 ~ 6631907 (-)
G29656 NA other upstream 1462772 7964364 ~ 7965500 (-)
G29746 NA other upstream 1852906 8354498 ~ 8358127 (-)
G30316 NA other upstream 2876345 9377937 ~ 9406921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location