CI01000004_06510788_06533217 (PKN2)


Basic Information

Item Value
gene id CI01000004_06510788_06533217
gene name PKN2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6510400 ~ 6533382 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06510788_06533217.mRNA
AGACCCCAGAACTTCTGCTTTTCTTTAAAGGAACACTCCACTTTTTTTTCTTTGGTCATTTTTGAGCGAGATGCTAACGGTCTAATCAGATTCAATGAACTATGCTAAGCTATGCTAAAAGTGGTACCGCCAGACCCGGAGAGTCTGCAGTGGAGTGTTCCTTTAATGACATGTTTGAGTGCAGCTTGCCTGAGAGGTTTGGCCACAAGAGTGGCGCTGACGGACAGAAAACTGCTTGCAACAGCACAGCAGATGCTTCAAGACAGCAAAACAAAGATCGAGTTCATCCGAATGCAGATCCTCAAAGCCAGCCAAACCAGCGAGCTCAGCTTTGACAACAATGATGTCATTGCCAAACCCATCATCAGTCCACTGGACCTGCGGGTGGAGGAGCTTTGCCATCACACACGGATAGAGTACGCTGTGGCCGAGGGGGCCAAGAATGTCATGAAGCTGTTGGGCTCTGGCAAACTGGCCGAGAAAAGGGCGCACTCAGAGGCCCAAGCCAGATTCAATGAGTCCAATCAGAAGCTGGATTTGTTGAAGTATTCCTTGGAGCAGAGACTCAATGAGCTTCCGAAGAACCACCCCAAGAGCAGTCTGATCATGGAGGAGTTATCGCTCATGTCCTCTCCAGCCCTCAGTCCCCGCCAGAGCTTCATATCCACACAGAACCACAACAGCACTGTCAAGAACCAGTACAGCACCAAACCAGCTGCACTCACAGATGAGATTAGTGCTGTGCTGAAGCTTGACAACACTGTAGTTGGTCAGACCAGTTGGAAACCTGTCAGTAATCAGTCATGGGACCAGAAGTTTACATTAGAGCTAGACCGGTCTCGTGAGCTGGAGATCTCGGTGTATTGGAGAGATTGGAGGTCTCTTTGTGCAGTGAAATTCCTGCGACTGGAGGACTTCCTGGACAACCAGCGGCACGGAATGTGCCTTTACCTTGAGCCACAAGGGACTCTGTTTGCAGAGGTTACCTTTTTTAATCCAGTCATTGAGCGAAGAACCAAACTCCAAAGGCAGAAGAAGATCTTTTCAAAGCAACAAGGGAGAACGTTTCTGCGGGCCCCTCAGATGAGCATCGGTACATGGGGCCGGCTGGTGAGAAGAGCCATTCCCTCTCCCAATAACTCATTTAGTCCTCAAGTGGCTGAACTGGCAGCTGAGACTGGACACAGCAGTCACCCAGGAACCCCTGCTCTGAGGAGTGACCCAATAGTGACAAAACTGGACTTTGACAAAGACACTACACCAAAGCATTACTCTCCTGTTAGTATAAGAGAAGTCCTGCCTGAGAACCAGATCCCCAACAAAGAGCGAGAACAGGACACTTTGACCACATTTGACTACCGAAATGACAGGAATAGCATCATTGTTCAGTCTGACCTTGAGGAAGTCGTGGAACGTGAGACTCAACCGTCAGCATTACAGCTCATAACTGTCCAAAAGAACACAGAAATAAGGGAAGAAGAAGAAGAGGAAGAACAGTTTCATTTCAGTCTTAAAGACTTTAAATGTGTTGCAGTGTTAGGACGGGGCCATTTTGGAAAGGTGTTACTAGCAGAATACAGTATTACAGGTGAAATGTTTGCCATCAAGGCCCTTAAGAAGGGAGATATTGTTGCCCGTGATGAGGTTGAAAGTTTGATGTGTGAGAAGAGGATATTCGAGACTGTGAACAGCGTGCGGCACCCGTTCCTGGTCAATCTTTTTGCGTGTTTCCAGACCAAGGAGCATGTGTGTTTTGTGATGGAGTATGCAGCAGGAGGAGACCTCATGATGCACATTCATGCCGATGTGTTTTCAGAGCCACGGGCCACGTTTTATGCAGCTTGTGTTGTCCTGGGGTTGCAGTTTTTACATGAGCACAAGATTGTATACAGAGATCTGAAGTTGGATAACTTACTGCTTGACACAGAGGGATTCGTCAAGATTGCTGACTTTGGTCTTTGCAAAGAAGGAATGGGTTACCGGGACAGAACGAGCACTTTCTGTGGCACTCCAGAATTTCTGGCTCCTGAGGTGTTAACCGAAACATCCTACACACGTGCAGTGGACTGGTGGGGGCTCGGCGTGCTCATTTTTGAGATGCTTGTTGGGGAGTCTCCATTTCCCGGTGATGATGAAGAAGAGGTGTTTGACAGCATTGTGAATGACGAGGTTCGGTACCCAAGATTCCTCTCAACAGAGGCCATCTCCATTATGAGAAGGGTTGGTACCAAGGGCAGCTTTATTAGTGTGGATTTACCAAGTGTAGACAAATTTTGTAGGAGTATCAGTCTTATCAATTTCTTTCACTTTTGCACACAGTTATTAAGAAGGAATCCAGAGCGCCGACTTGGAGCTGGTGAACGCGACGCACAGGATGTGAAGAAACATCTGTTCTTCAGGAATATTGACTGGGACGGACTACTAGCAAAGAAAGTGAAGCCACCATTTGTACCCACAATCCAAAGTTCCAGTGACGTTAGTAACTTTGATGATGAATTTACCTCAGAGGCTCCGGTGCTGACACCACCCAGAGAACCCCGGCACTTAAACCAGGACGAGCAGGACCTGTTTGTAGACTTTGACTATATTGCAGACTGGTGTTAGCCATGTTGGCATCCCTCCCTCTACACACACAGATGCAGATAATGTGAATCAGACCATTTGCAGATATCCTTATTTTGTTTTCAGTGTTACTTTAGGAATACCACAATCCCTTTTCTGTTTTGACATTTCATCAGAAATGATTGGACCTAAGCAGTGATTGAGAAAAACATGAATTGATCAGTGTAGTTTTCAACTATACTGACAACCACAGCTCATGATGAGAACAGGTGATCAGGTGTCTTACTGGCACCCCCTAGTGTTGTGGAAGTCAGTATGCCACATCCACATTCATCTTGCCCACAGAATTTCATCAGTTACACTGAGAATCATGAGCCTTGATTTTGATATTTTTGTATTTGAAGCATTTAAAATGTGAGTGGTTAAAAAA

Function

symbol description
pkn2 Enables RNA polymerase binding activity; histone deacetylase binding activity; and protein serine/threonine kinase activity. Involved in several processes, including apical junction assembly; positive regulation of cell cycle; and positive regulation of viral genome replication. Located in several cellular components, including cleavage furrow; cytoskeleton; and midbody.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007507 heart development biological_process

KEGG:

id description
K06071 PKN1; serine/threonine-protein kinase N1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06510788_06533217.mRNA True 2992 mRNA 0.46 18 6510400 6533382

Neighbor

gene id symbol gene type direction distance location
CI01000004_06497733_06501592 LRRC8D, LRRC8DA coding downstream 8808 6497705 ~ 6501592 (-)
CI01000004_06470183_06483783 HFM1 coding downstream 26617 6470183 ~ 6483783 (-)
CI01000004_06441871_06454719 SEPT2 coding downstream 55387 6441476 ~ 6455013 (-)
CI01000004_06419749_06423949 BOKB coding downstream 86413 6419187 ~ 6423987 (-)
CI01000004_06406371_06415282 NA coding downstream 93982 6406371 ~ 6416418 (-)
CI01000004_06539836_06541252 NA coding upstream 5522 6538904 ~ 6541252 (-)
CI01000004_06547877_06549227 NA coding upstream 14008 6547390 ~ 6549227 (-)
CI01000004_06555703_06558890 HS2ST1, HS2ST1A, HS2ST coding upstream 22095 6555477 ~ 6558890 (-)
CI01000004_06569673_06570071 NA coding upstream 36214 6569596 ~ 6570171 (-)
CI01000004_06677179_06740196 TOX coding upstream 143797 6677179 ~ 6740196 (-)
G29188 NA non-coding downstream 106679 6399639 ~ 6403721 (-)
G29208 NA non-coding downstream 212332 6285477 ~ 6298068 (-)
G29233 NA non-coding downstream 334500 6175696 ~ 6175900 (-)
G29172 NA non-coding downstream 465093 6044360 ~ 6045307 (-)
G29153 NA non-coding downstream 541271 5968478 ~ 5969129 (-)
G29385 NA non-coding upstream 94192 6627574 ~ 6627791 (-)
G29386 NA non-coding upstream 94594 6627976 ~ 6628269 (-)
G29387 NA non-coding upstream 95684 6629066 ~ 6629470 (-)
G29391 NA non-coding upstream 121841 6655223 ~ 6656385 (-)
G29402 NA non-coding upstream 236980 6770362 ~ 6770583 (-)
CI01000004_05617072_05627369 NA other downstream 882886 5616644 ~ 5628289 (-)
G27746 NA other downstream 1306676 5178227 ~ 5203724 (-)
G26788 NA other downstream 3234679 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4735459 1772928 ~ 1774942 (-)
G29388 NA other upstream 97911 6631293 ~ 6631907 (-)
G29656 NA other upstream 1430982 7964364 ~ 7965500 (-)
G29746 NA other upstream 1821116 8354498 ~ 8358127 (-)
G30316 NA other upstream 2844555 9377937 ~ 9406921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location