CI01000004_06547877_06549227


Basic Information

Item Value
gene id CI01000004_06547877_06549227
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6547390 ~ 6549227 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06547877_06549227.mRNA
GTAGTGACCCATTTATTATGGTAAACACTGCTTGTAATACACAACTGCCTCATGTCAGAATGGGGGCCCTGGCATGGAAGCGGTGTGTTGGATGTGGATGCAAGATTTTGGACCGCTTCCTCCTGTTTGCTTTGGATGGATACTGGCACTGCCACTGTCTCAAGTGTTCCTGCTGCCAAGCCCAGCTGGCAGAAATTGGCTCATCGTGTTTCACAAAGCGTGGCTTGATCCTCTGCAAAAGTGACTATATAAGATTATTTGGAAACAGCGGAGTCTGCAGGGCTTGCAGTAAGTCTATTCCAGCAAATGAAATGGTTATGCGAGCACAGGGCAATGTTTTCCATGTCAAGTGTTTTGTATGCTCTGTCTGCCAAAACCAGCTAGTACCTGGCGACCGTTTTCACTATGTGAATGGAAAACTGCACTGTGAGCGGGACAGGCCAACAGCTTCTGCGCACAGAAACGACCACTTGGATTCACTCAGGGAGCACAACATATCCGAACAGGAGTCCTGAGCTCGTCGTTTTTTTTTGCTGAGCTCCAAGAAAGAGACACTAATGGAGCACCTAGTTTCATATTCAAGACCTCATATAACCCAGTAGTTGCTTTGTCAGCTACAGTCCATTTTGTGAAGGTCTAATATTGTGGAAATTCAACGTATATGGTAATATCTGCCAGTTTAAATGAGGTTAACCATTGGAGCTGAAAAGTAATATCAGCAAGCATCCTTGCGTATCATAATCAATTATGGATTGGTTTTGCACAGAATGACCTTTCTTATATGTTGTGGACCTGCAATTTAGTTGTGGTGTCTGTTAGTTCTGAAATGGAGATGTGTGCTTCACTTTCAGGCAGTGAAAACACACCATCTTCCACTGGTGTGTGTGTGTGAGTGACATTTATCTTTTGGTAATGATATGGATATTCTTCCTGGTCTGCAATTACAGTATCCCTGTAATTAACCTGTCCATAAATCAATTCTAGCAGCATCCAGAGAATAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06547877_06549227.mRNA True 1002 mRNA 0.43 3 6547390 6549227

Neighbor

gene id symbol gene type direction distance location
CI01000004_06539836_06541252 NA coding downstream 6138 6538904 ~ 6541252 (-)
CI01000004_06510788_06533217 PKN2 coding downstream 14008 6510400 ~ 6533382 (-)
CI01000004_06497733_06501592 LRRC8D, LRRC8DA coding downstream 45798 6497705 ~ 6501592 (-)
CI01000004_06470183_06483783 HFM1 coding downstream 63607 6470183 ~ 6483783 (-)
CI01000004_06441871_06454719 SEPT2 coding downstream 92377 6441476 ~ 6455013 (-)
CI01000004_06555703_06558890 HS2ST1, HS2ST1A, HS2ST coding upstream 6250 6555477 ~ 6558890 (-)
CI01000004_06569673_06570071 NA coding upstream 20369 6569596 ~ 6570171 (-)
CI01000004_06677179_06740196 TOX coding upstream 127952 6677179 ~ 6740196 (-)
CI01000004_06805399_06814604 CAR8, CA8 coding upstream 255990 6805217 ~ 6814604 (-)
CI01000004_06827636_06828127 NA coding upstream 278217 6827444 ~ 6828364 (-)
G29188 NA non-coding downstream 143669 6399639 ~ 6403721 (-)
G29208 NA non-coding downstream 249322 6285477 ~ 6298068 (-)
G29233 NA non-coding downstream 371490 6175696 ~ 6175900 (-)
G29172 NA non-coding downstream 502083 6044360 ~ 6045307 (-)
G29153 NA non-coding downstream 578261 5968478 ~ 5969129 (-)
G29385 NA non-coding upstream 78347 6627574 ~ 6627791 (-)
G29386 NA non-coding upstream 78749 6627976 ~ 6628269 (-)
G29387 NA non-coding upstream 79839 6629066 ~ 6629470 (-)
G29391 NA non-coding upstream 105996 6655223 ~ 6656385 (-)
G29402 NA non-coding upstream 221135 6770362 ~ 6770583 (-)
CI01000004_05617072_05627369 NA other downstream 919876 5616644 ~ 5628289 (-)
G27746 NA other downstream 1343666 5178227 ~ 5203724 (-)
G26788 NA other downstream 3271669 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4772449 1772928 ~ 1774942 (-)
G29388 NA other upstream 82066 6631293 ~ 6631907 (-)
G29656 NA other upstream 1415137 7964364 ~ 7965500 (-)
G29746 NA other upstream 1805271 8354498 ~ 8358127 (-)
G30316 NA other upstream 2828710 9377937 ~ 9406921 (-)
G31203 NA other upstream 4197210 10746437 ~ 10750641 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015395 zgc:56628 coding NC_007113.7 CM002886.2 22409249 ~ 22415196 (+)