CI01000004_06555703_06558890 (HS2ST1, HS2ST1A, HS2ST)


Basic Information

Item Value
gene id CI01000004_06555703_06558890
gene name HS2ST1, HS2ST1A, HS2ST
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6555477 ~ 6558890 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06555703_06558890.mRNA
AACGAGCCATTGCCAGACATGAGGTACGAGAGATTGAGCAACGACACATTCAAGAGGGGGCGAAGGAGGCCCTGGTAGAGGAGGACGATTTGGTGGTCATCTACAACCGAGTGCCCAAAACAGCCAGTACCTCCTTCACCAACATTGCCTATGACCTGTGCAACAAAAACCACTACCATGTGCTGCACATCAATACCACCAAAAATAATCCTGTCATGTCCCTTCAGGATCAGGTACGCTTTGTAAAGAATGTGACATTATGGAAGGAGATGAAGCCCGCGTTCTACCACGGACATGTTTCCTTCCTGGATTTCACCAAATTTGGAGTGAAGAAAAAGCCTGTTTACATAAATGTTATCCGGGACCCCATTGAGCGTCTGGTGTCTTACTACTATTTCTTACGCTTTGGTGATGACTACAGACCCGGCCTACGACGCAGAAAGCAAGGAGACAAAAAGACGTTTGATGAGTGTGTAGCTGCTGGAGGGTCTGACTGTGCTCCAGAGAAACTGTGGCTTCAGATTCCCTTCTTCTGTGGTCATTACTCTGAGTGCTGGAACATTGGCAGCAAATGGGCTTTAGAGCAAGCCAAATACAACCTGGTGAATGAATATATGTTAGTTGGGGTGACAGAGGAGTTGGAAGACTTTGTTATGATGTTGGAGGCGGCACTTCCTCGCTTTTTTAAGGGGGCCACCGAGCTCTATCGGACAGGGAAGAAATCGCACCTAAGGAAAACGAGTGAGAAGAAGCCACCCACCAAAGAGTCTATAGCCAGACTACAGCAGTCAGACATCTGGAAAATGGAGAATGAGTTTTATGAGTTTGCACTAGAGCAGTTCCAGTACGTTCGGGCTCATGCAGTGAGAGAAAAAGATGGAGAGCTGTACCTACTGGCACAGAACTTTTTCTATGAGAAAATCTACCCAAAGACTACCTGAGACTCCATAACGCCGTATGCTGTGGTCAGAAACACTGGAGGAGGACACATTACGTTGAAATGTGCATTCTGCCTGACTCTTTTCCATCTGGATATGTACATTTTGAGCAGCTGAAACTAGTATGTGCCACAGGGAAGAGTCTTGGGGCCAATCAGCTGTCATGAGCTTTATCCCCCAATACATATCATTTCAAAGAAGGGTTAAAAGCTCTCAAATGAGCATTAAA

Function

symbol description
hs2st1a Enables heparan sulfate sulfotransferase activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second; regulation of canonical Wnt signaling pathway; and regulation of cell-cell adhesion mediated by cadherin. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; immature eye; otic vesicle; pectoral fin; and segmental plate. Orthologous to human HS2ST1 (heparan sulfate 2-O-sulfotransferase 1).
hs2st1 Predicted to enable heparan sulfate 2-O-sulfotransferase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, enzymatic modification and heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process. Predicted to act upstream of or within gene expression; heparin metabolic process; and ureteric bud formation. Located in membrane.
hs2st Enables heparan sulfate 2-O-sulfotransferase activity. Involved in heparan sulfate proteoglycan biosynthetic process and open tracheal system development. Predicted to be integral component of membrane. Is expressed in lamina furrow and organism. Orthologous to human HS2ST1 (heparan sulfate 2-O-sulfotransferase 1).

GO:

id name namespace
GO:2000047 regulation of cell-cell adhesion mediated by cadherin biological_process

KEGG:

id description
K02513 HS2ST1; heparan sulfate 2-O-sulfotransferase HS2ST1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06555703_06558890.mRNA True 1167 mRNA 0.46 6 6555477 6558890

Neighbor

gene id symbol gene type direction distance location
CI01000004_06547877_06549227 NA coding downstream 6250 6547390 ~ 6549227 (-)
CI01000004_06539836_06541252 NA coding downstream 14225 6538904 ~ 6541252 (-)
CI01000004_06510788_06533217 PKN2 coding downstream 22095 6510400 ~ 6533382 (-)
CI01000004_06497733_06501592 LRRC8D, LRRC8DA coding downstream 53885 6497705 ~ 6501592 (-)
CI01000004_06470183_06483783 HFM1 coding downstream 71694 6470183 ~ 6483783 (-)
CI01000004_06569673_06570071 NA coding upstream 10706 6569596 ~ 6570171 (-)
CI01000004_06677179_06740196 TOX coding upstream 118289 6677179 ~ 6740196 (-)
CI01000004_06805399_06814604 CAR8, CA8 coding upstream 246327 6805217 ~ 6814604 (-)
CI01000004_06827636_06828127 NA coding upstream 268554 6827444 ~ 6828364 (-)
CI01000004_06915152_06921193 FBXL7 coding upstream 355699 6914589 ~ 6921193 (-)
G29188 NA non-coding downstream 151756 6399639 ~ 6403721 (-)
G29208 NA non-coding downstream 257409 6285477 ~ 6298068 (-)
G29233 NA non-coding downstream 379577 6175696 ~ 6175900 (-)
G29172 NA non-coding downstream 510170 6044360 ~ 6045307 (-)
G29153 NA non-coding downstream 586348 5968478 ~ 5969129 (-)
G29385 NA non-coding upstream 68684 6627574 ~ 6627791 (-)
G29386 NA non-coding upstream 69086 6627976 ~ 6628269 (-)
G29387 NA non-coding upstream 70176 6629066 ~ 6629470 (-)
G29391 NA non-coding upstream 96333 6655223 ~ 6656385 (-)
G29402 NA non-coding upstream 211472 6770362 ~ 6770583 (-)
CI01000004_05617072_05627369 NA other downstream 927963 5616644 ~ 5628289 (-)
G27746 NA other downstream 1351753 5178227 ~ 5203724 (-)
G26788 NA other downstream 3279756 3267683 ~ 3275721 (-)
CI01000004_01773383_01774888 INSL5B other downstream 4780536 1772928 ~ 1774942 (-)
G29388 NA other upstream 72403 6631293 ~ 6631907 (-)
G29656 NA other upstream 1405474 7964364 ~ 7965500 (-)
G29746 NA other upstream 1795608 8354498 ~ 8358127 (-)
G30316 NA other upstream 2819047 9377937 ~ 9406921 (-)
G31203 NA other upstream 4187547 10746437 ~ 10750641 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location