CI01000004_06571261_06572539 (SEP15)



Basic Information


Item Value
gene id CI01000004_06571261_06572539
gene name SEP15
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6570771 ~ 6572667 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_06571261_06572539.mRNA
ATATAAAAAGAAATTCAGTCAGGTTTTTCCAAACAATTCTTAAACCATTGAACTTTTAAAGTTCAAAAAATAAATAAATACATAAAAATAAAAAATAAAATAAAATGCTCTAATCTATCTAATCTATTTTTTGTCCCATTCTTGTTCATTTTTATTCTTTAATAAAAACGTAACAATTATTTTTATTATTATTGTTATTAATAATAATATTTATTATTATTATTATTATTATTTTTCCTGTGGCAATGCATGATAAACGACAAAACCAGACACTCCTTCAGCTTAGTTTAAAAGACTATAATAAGCCTGTAATTGTTTAATCTCTTAGTTGCCAATTGTTCAAATAGTTTGAGCTTTTTTAAATCAAGGGGAAACTGATATTCTTTCAAATAGTTATTTGGTTATGCTAAGACTTTTATTAATAAGCTCGGTGTAGCGGATGTGTTTGACGCACTTCCTGCTGAACCCAGCGAGAGGAAGAGAAACAATCATGGCGGGGGAAGTGTACCTGCTTTGGTTACTGCCGTTATTACAAACGCTGGCGTCTTATGGAGCGGAGCTCTCCTCTGAGGCGTGCAGGGAGCTGGGCTTCTCCAGCAATCTCCTGTGTAGCTCCTGTGACCTCCTGGGGCAGTTCAGCCTGAACCAGTTAGACCTTCCATGCAGACAGTGCTGCCAAGAGGAGGCTCAGCTGGAGTCTAGGAAGCTCTACCCAGGAGCCATCCTTGAGGTCTGTGGATGAAAATTGGGGAGGTTCCCTCAAGTCCAAGGTAGATTGAGGATTTGGCCTCAAATATGAGTAACTGCTACTTCAAACTTCATATTTCTTGTGTTAATGATTTTACAAAAATGACACAGCAATGTAGCAAA

Function


GO:

id name namespace
GO:0008430 selenium binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_06571261_06572539.mRNA False 870 mRNA 0.36 3 6570771 6572667

Neighbor


gene id symbol gene type direction distance location
CI01000004_06503758_06508636 GTF2B, GTF2B.L, TF2B coding upstream 61828 6503445 ~ 6508943 (+)
CI01000004_06487045_06494732 NA coding upstream 75227 6487045 ~ 6495544 (+)
CI01000004_06466871_06468477 NA coding upstream 102147 6466770 ~ 6468624 (+)
CI01000004_06463149_06463918 NA coding upstream 106765 6463149 ~ 6464006 (+)
CI01000004_06424864_06438552 STK25B, STK25, STK25A coding upstream 132099 6424584 ~ 6438672 (+)
CI01000004_06624281_06625474 FAM110B coding downstream 50370 6623037 ~ 6626433 (+)
CI01000004_06637295_06650428 NA coding downstream 64413 6637080 ~ 6650825 (+)
CI01000004_06651958_06654716 CYP7A1 coding downstream 79202 6651869 ~ 6654928 (+)
CI01000004_06833827_06840024 RAB2A coding downstream 261160 6833827 ~ 6840399 (+)
CI01000004_06860789_06892941 CHD7 coding downstream 288122 6860789 ~ 6893505 (+)
G28326 NA non-coding upstream 113490 6456898 ~ 6457281 (+)
G28325 NA non-coding upstream 113922 6456624 ~ 6456849 (+)
G28309 NA non-coding upstream 129269 6425355 ~ 6441502 (+)
G28308 NA non-coding upstream 156515 6413748 ~ 6414256 (+)
G28293 NA non-coding upstream 174551 6370266 ~ 6396220 (+)
G28440 NA non-coding downstream 2866 6575533 ~ 6576385 (+)
G28421 NA non-coding downstream 15215 6587882 ~ 6600374 (+)
G28471 NA non-coding downstream 65704 6638371 ~ 6638680 (+)
G28474 NA non-coding downstream 70418 6643085 ~ 6643341 (+)
G28476 NA non-coding downstream 72342 6645009 ~ 6645279 (+)
G28302 NA other upstream 68684 6470028 ~ 6502087 (+)
G28165 NA other upstream 837770 5732589 ~ 5733001 (+)
G27805 NA other upstream 1196968 5372825 ~ 5373803 (+)
CI01000004_03550525_03552621 PTGER4C other upstream 3018325 3550329 ~ 3553423 (+)
G26245 NA other upstream 3048378 3509017 ~ 3522393 (+)
CI01000004_07654234_07655677 MRPL34 other downstream 1082105 7654234 ~ 7656383 (+)
CI01000004_08414451_08436256 NA other downstream 1861038 8414316 ~ 8439933 (+)
G28859 NA other downstream 2026568 8599235 ~ 8599603 (+)
CI01000004_08976512_08980033 TTPA other downstream 2403771 8976254 ~ 8980984 (+)
G30797 NA other downstream 3924709 10497376 ~ 10497788 (+)

Expression


CI01000004_06571261_06572539(SEP15) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 300.
End of interactive chart.

CI01000004_06571261_06572539(SEP15) Expression in each Bioproject

Bar chart with 44 bars.
CI01000004_06571261_06572539(SEP15) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
End of interactive chart.

Co-expression Network