CI01000004_06677179_06740196 (TOX)


Basic Information

Item Value
gene id CI01000004_06677179_06740196
gene name TOX
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 6677179 ~ 6740196 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_06677179_06740196.mRNA
ATGGACGTGAGATTTTATCCACAACCTCCACCACCATCAGCAACAGATCCTTCCCGACTGGGACAGTCACACTATTCGGACTCTCCGTACTGCAATAAGTACGACAGTGAAAACATGTTCATGAGTATGCCAGAGCCCAGCCAGGACTTTGTGCCAGGGAACCAGTTCCGCGTGCCTGCCAGTCCCAGCCAGACGCAGCACAGCAACAAACAGGCCGGCGGCCACTGGAAAAGAGAGACCCCTACACACACGGACGGCCACCGTCTGACATGGTCCTACCCAGTGCCCAGTCTTGGGGACGAAGACTTCAACATCCCGCCAATCACTCCCCCCACCCTCCCCGAACACATGCTGGCACACCTGCCCGAGTCTGAGTCCGGAACATACCATCACCTTTGCCCCCCTGTCTCCCAGAACGGACTGCACCCCTTTCACCTGCAAGGAATGGACCTGCCCGGCATGTCGGTCCCCAACATGTTGGGTCAAGATGGCGGTCTGCTCACCAACTCCCTTTCAGTGATGCAGCAAATGGTCAACTCAGACTCGCGTTACGGTGGCCACCCTCAGGTGGATACGCTTAGACCCAGGGTCCAACCTGGAATGGTTCCTCAAGGTCAGCTGACCACAATCAACCAGTCACAACTCAACACTCAGTTGGGTCTGAATGGCAACAATGGCACCCATGGATCCCCATCTCCACCAGAGAGCAAGTCAGCCACACCCTCCCCCTCCAGCTCTGTGCATGAGGACGATGCAGATGATGCTGCCAAGATGAATGGGGCAGAGAAGAGAGCAGCCACAGACATGGCCAAGAAGCCCAAAACCCCCAAGAAAAAGAAAAAGAAAGACCCCAACGAGCCTCAGAAGCCAGTGTCAGCCTATGCCCTGTTCTTCAGAGACACACAGGCAGCTATCAAAGGCCAAAATCCTAATGCCACATTTGGAGAGGTTTCCAAAATAGTGGCCTCCATGTGGGACGGTCTCGGCGAGGAACAAAAACAGGTGTACAAGAAAAAAACAGAAACCGCAAAGAAGGAGTACCTCAAACAGCTGGCTGCGTACAGAGCGAGCCTCGTGTCTCAGAGTTACAATGACCCAGGCGATGTGAAGGCATCACAGGCCTCTCAGATGCTCGGGCCCAAGCCACCAGTTTTCTCTGGGGCAGGCCAGTCTCACCCAGGTCTCTACATGGCTCCTCCGTACCACCAGCAGCCAGGACTCAGTCCCCATCTGCCCCAGATGCAGCCAGGCCTAGCCCGAGGTGGCACATCCCGGCCCAGCGCGCCTATGAGCATGGGCAGCATGGCGGGCTCATCCCCCCCTCCACTGCAGATCAGCCCCCCCTTACACCAGCACCTCAATCTCCACCAGCAACAGCAGCAGCTCAGCAGCCACCCGCTGCCACTGCACTCCCCATCCATGGCCCAGGGTTTCCCCCTTCAGGCAGAGTATCAGAGCATGGTAAATGTCACATCCTCCGCCGGACCTGGCCTGTCCCCTTCAATGGACTACCGTACCGGCTGCAGGAACGGACCGACCCAGGGCCTGGACTGGACCCCTGACTACTGCGGCAACGGG

Function

symbol description
tox Predicted to enable chromatin DNA binding activity. Predicted to be involved in leukocyte differentiation and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human TOX (thymocyte selection associated high mobility group box).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_06677179_06740196.mRNA True 1578 mRNA 0.57 9 6677179 6740196

Neighbor

gene id symbol gene type direction distance location
CI01000004_06569673_06570071 NA coding downstream 107008 6569596 ~ 6570171 (-)
CI01000004_06555703_06558890 HS2ST1, HS2ST1A, HS2ST coding downstream 118289 6555477 ~ 6558890 (-)
CI01000004_06547877_06549227 NA coding downstream 127952 6547390 ~ 6549227 (-)
CI01000004_06539836_06541252 NA coding downstream 135927 6538904 ~ 6541252 (-)
CI01000004_06510788_06533217 PKN2 coding downstream 143797 6510400 ~ 6533382 (-)
CI01000004_06805399_06814604 CAR8, CA8 coding upstream 65021 6805217 ~ 6814604 (-)
CI01000004_06827636_06828127 NA coding upstream 87248 6827444 ~ 6828364 (-)
CI01000004_06915152_06921193 FBXL7 coding upstream 174393 6914589 ~ 6921193 (-)
CI01000004_06960750_06963258 MPLKIP coding upstream 220479 6959573 ~ 6963282 (-)
CI01000004_07008022_07016495 INHBAB coding upstream 267632 7007828 ~ 7017478 (-)
G29391 NA non-coding downstream 20794 6655223 ~ 6656385 (-)
G29387 NA non-coding downstream 47709 6629066 ~ 6629470 (-)
G29386 NA non-coding downstream 48910 6627976 ~ 6628269 (-)
G29385 NA non-coding downstream 49388 6627574 ~ 6627791 (-)
G29188 NA non-coding downstream 273458 6399639 ~ 6403721 (-)
G29402 NA non-coding upstream 30166 6770362 ~ 6770583 (-)
G29408 NA non-coding upstream 55126 6795322 ~ 6795621 (-)
G29411 NA non-coding upstream 63807 6804003 ~ 6804387 (-)
G29414 NA non-coding upstream 81771 6821967 ~ 6896950 (-)
G29388 NA other downstream 45272 6631293 ~ 6631907 (-)
CI01000004_05617072_05627369 NA other downstream 1049665 5616644 ~ 5628289 (-)
G27746 NA other downstream 1473455 5178227 ~ 5203724 (-)
G26788 NA other downstream 3401458 3267683 ~ 3275721 (-)
G29656 NA other upstream 1224168 7964364 ~ 7965500 (-)
G29746 NA other upstream 1614302 8354498 ~ 8358127 (-)
G30316 NA other upstream 2637741 9377937 ~ 9406921 (-)
G31203 NA other upstream 4006241 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 4667269 11406957 ~ 11412907 (-)

Expression


Co-expression Network