G24554 (LOC107729149,LOC108279496,LOC107555887,LOC107708007)


Basic Information

Item Value
gene id G24554
gene name LOC107729149,LOC108279496,LOC107555887,LOC107708007
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 85235 ~ 86588 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU36576
CCATGTGAGGTTGCCAATGTACAGAGCGATTCGTTTGCCAGTGTAGGTGTAGACGACGTTTGGCGGAGCGCCTTTGTTCCCCTCGGATCCTCCCGGGGCAGGCAGGTTGTCCAGGTAATCTCGGTCCTCAGGTGCGTCTCCGTTGTTGGCAGATGGTGAGATGACATCATCATACAGGTCAATCTGCTCATGAACAGGATAATCTGATTCCTGTTAAATTCCTCTTCTACATCGGCGTAAATATCGATGTGGTCGACACCGTCCGCCATTTTCTGTTTCCCTCCTCCTCCACTGTGCTCGCGCTGCGCGTGAAG

Function

NR:

description
PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36576 True 314 lncRNA 0.53 2 85235 86588

Neighbor

gene id symbol gene type direction distance location
LOC122343428 lmod2b,LOC107726005,LOC107584027,LOC107656401,LOC107581005,LOC107711505 coding upstream 67331 13818 ~ 17904 (+)
LOC122343427 asb15b,LOC107726003,LOC107658939,LOC107583946,LOC107656400,LOC107581016,LOC107711503 coding upstream 72117 9542 ~ 13118 (+)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 coding downstream 416 87004 ~ 89152 (+)
frs2a frs2,frs2a,LOC107658966,LOC107590545,LOC107729158 coding downstream 3620 90208 ~ 107305 (+)
glipr1a NA coding downstream 108504 195092 ~ 199536 (+)
LOC122343357 LOC107658963,LOC107708011,LOC107555883 coding downstream 118917 205505 ~ 213159 (+)
zdhhc17 zdhhc17,LOC107708015,LOC107658960,LOC107656450 coding downstream 257004 343592 ~ 360922 (+)
G24553 NA non-coding upstream 2712 75388 ~ 82523 (+)
G24558 wasl,LOC107583945 non-coding upstream 59339 24544 ~ 25896 (+)
G24567 NA non-coding downstream 29611 116199 ~ 116891 (+)
G24586 NA non-coding downstream 129387 215975 ~ 281984 (+)
G24587 NA non-coding downstream 155978 242566 ~ 282841 (+)
G24593 phlda1,LOC107708012,LOC107658781,LOC107656271,LOC107729151 non-coding downstream 163584 250172 ~ 252374 (+)
G24594 NA non-coding downstream 166677 253265 ~ 315566 (+)
G24555 cpsf6 other upstream 273 83688 ~ 84962 (+)
cmah cmah,LOC107555874,LOC107729160,LOC107656456,LOC107590555 other downstream 98128 184716 ~ 194183 (+)
G24609 NA other downstream 206647 293235 ~ 295069 (+)
G24632 LOC107584022 other downstream 286939 373527 ~ 374082 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other downstream 347755 434343 ~ 439352 (+)
G24771 plekha5,LOC107584023,LOC107658747 other downstream 567504 654092 ~ 665530 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G98604 cpsf6 non-coding NC_035907.1 CM008310.1 9179814 ~ 9181980 (-)