G24555 (cpsf6)


Basic Information

Item Value
gene id G24555
gene name cpsf6
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 83688 ~ 84962 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU36577
CCTGCCGCCAGGGCCATAGTCTCTGTCGTATGGAGGTGGGCGGCCATACATTTCACCCGGCGGGGGGCCCCTGCTGTCGGACGATGGCATGTTGTTGTTTCCAGGTGGTGGAAAGAAGGCCGGGTTGACGTGAGGAGCCGGAGGTGGACCTCCAGGGGGGGGTCCCTGCATGTGAGGTGGAGGAGCAAGGCCAAGTGGGGGTCCTAAGGGCCCAGGTGGACGGGGTGGGAAGGGTCCCGGAGGGGGCGGACCCTGCTGAGGTGGAGGGGGCCTGGGGGAGGCCCGTATCCAGGTGGGGGTGGGCCAGGAGGCATCGGACCCATAGGAGGCTGACCAAACTGACCAGGAAACATGACGGGTGGAGGAGGACGGTCTCCTCTGTTTGGAGGACCTCCGAGGGGCGGCAGCAAACCTTGTCCAGGTGGAGGGGGCCCAGGGGGTCCTGGAGGCCCAGGTGGGCCAGAGGGAGGACGGGGTGGCCCTTGCATTCCTGAAAATGTGGCGGAGGTCCACCAGGTCCAACTGGTCCAGGAAAGCGGTCTCCTCCCGGGCCAGGTGGGGTGGGAAAGCGTCCTCGATTCTTGCCAAGTGGGAAGCCGCTACGAGATCCTGAGCCCGGAGGCCCTGCCTTCCCCTCTCCGGACATCTGCCCGGACTGTGTGCCTGAGTggacaaTTTTTCGCGACTGCATCTCAAACTGGCTGAGAGACTGTTTGTTGCAAGGAGTGACGATCGGGTTTTGTCCATGCAGCTCACGTTTGGACAGCAGGTCCATCAGCTTCCTGGATGAGGAGTCTGACCCCACGCAGACCAGAGCAAACCTGTGAAGCACAGTCATGATGCTGAGCTC

Function

symbol description
cpsf6 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA alternative polyadenylation; positive regulation of RNA export from nucleus; and protein-containing complex assembly. Predicted to act upstream of or within mRNA processing. Located in paraspeckles. Is expressed in several structures, including blastomere; central nervous system; digestive system; eye; and yolk. Orthologous to human CPSF6 (cleavage and polyadenylation specific factor 6).

NR:

description
cleavage and polyadenylation specificity factor subunit 6 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36577 True 850 TUCP 0.63 3 83688 84962

Neighbor

gene id symbol gene type direction distance location
LOC122343428 lmod2b,LOC107726005,LOC107584027,LOC107656401,LOC107581005,LOC107711505 coding upstream 65784 13818 ~ 17904 (+)
LOC122343427 asb15b,LOC107726003,LOC107658939,LOC107583946,LOC107656400,LOC107581016,LOC107711503 coding upstream 70570 9542 ~ 13118 (+)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 coding downstream 2042 87004 ~ 89152 (+)
frs2a frs2,frs2a,LOC107658966,LOC107590545,LOC107729158 coding downstream 5246 90208 ~ 107305 (+)
glipr1a NA coding downstream 110130 195092 ~ 199536 (+)
LOC122343357 LOC107658963,LOC107708011,LOC107555883 coding downstream 120543 205505 ~ 213159 (+)
zdhhc17 zdhhc17,LOC107708015,LOC107658960,LOC107656450 coding downstream 258630 343592 ~ 360922 (+)
G24553 NA non-coding upstream 1165 75388 ~ 82523 (+)
G24558 wasl,LOC107583945 non-coding upstream 57792 24544 ~ 25896 (+)
G24554 LOC107729149,LOC108279496,LOC107555887,LOC107708007 non-coding downstream 273 85235 ~ 86588 (+)
G24567 NA non-coding downstream 31237 116199 ~ 116891 (+)
G24586 NA non-coding downstream 131013 215975 ~ 281984 (+)
G24587 NA non-coding downstream 157604 242566 ~ 282841 (+)
G24593 phlda1,LOC107708012,LOC107658781,LOC107656271,LOC107729151 non-coding downstream 165210 250172 ~ 252374 (+)
cmah cmah,LOC107555874,LOC107729160,LOC107656456,LOC107590555 other downstream 99754 184716 ~ 194183 (+)
G24609 NA other downstream 208273 293235 ~ 295069 (+)
G24632 LOC107584022 other downstream 288565 373527 ~ 374082 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other downstream 349381 434343 ~ 439352 (+)
G24771 plekha5,LOC107584023,LOC107658747 other downstream 569130 654092 ~ 665530 (+)

Expression


Co-expression Network