cmah (cmah,LOC107555874,LOC107729160,LOC107656456,LOC107590555)


Basic Information

Item Value
gene id cmah
gene name cmah,LOC107555874,LOC107729160,LOC107656456,LOC107590555
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 184716 ~ 194183 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU36599
ttcaaaaagttTTTAACTACATCTAAAGCAATCTATAGTCTATAGTTAAACAAAAGCCAGTGTATAGTATTACTTCTCATcatttcatatcatatatatattttattggcaGATTCTGGAATTATTTTCATACAGAACTATCGCAAATATTTtgactttgttttatttgctgtaatgCGATAGGTTTATGAGGTTTaagctgcaaaaaaacacattactttcCCTCGTACGGGACATTATTGTTTCTTCTCTAAGCCACGAACGTTAAGAGGAAAGcgcatggattttttttacaaaagcttATCGTTGTTTAAAAGCTTGTGACGAAAATGTTACGTCCCTAACGTTACATCCTCGCTGTGagaccaaaacaataaaagccattacaaacAAGGCCTTTATGTCATCCACCGGAGGTTGCAGTCATCTCATTCAATGAACCTGTCGTTACTTTTTAAGCTCGTTTGACTCGTTTGACTCTTATTTGTTAGTAACACAGGGAGCCTCTATTTAATCCATATTATTTCTGGGCGTTTGAGTTACAGGTGAAATGTCATTGAACCTTAATAGCGATCATCCGTGTAAttcagagacaaaaaaaacctcatagCACACCCTCTCTGACTGAGAAACAGAACAACGGTTGTATAAGAGGATGACTGGCTCAGGTTTCAGCTCCTCTTTCACTTCTCACTGCAGGGATGTAGCAATCTTAATTTAtaagaaatttaattttaggttCAAAGATGCAGGAGGATGTTACACTGTACCAGATTTTCGGATGAAGGGCATATTAGATATGCTCCAAAAACGTTGCTCTCTAAATTAATTGCCAATATTTGATCTTTTCCTCTCAATCGCGTAATTTGAGACTTTAAAGGAGACATATATTTCGAGAGGTCGACTCATGTAtgatttttatatcaaaaaaacattataatacaattaatttctgtcctgttttaacACTGTTTGGGTAGGTGTGGGTGATTTCAGTGTACCTTTTAGGCGTCAGGAAAAGTCCCGTGGAGTTTCTGGTCTTACAAAATTAGAAACAGAGATTAAAAGGCATCAGACATCGGCCGAAACTGCCTCGGGTAAAAATTTGAATGTGAGGATGCACCTTCTGTTGGAGAAGCACCAATAAAAGATTATTTACATTAATCTGCCGTCGTTTGGGAAGAAGTGAAAGAAGCAAGAAACTAGAACCGAAACCTGCATCTGAAGGGTCGTGGACTTTTAGATTTCTCCGTTTACGGCTCACATTTATCAGATTTATAAAGTAGTTTTGTTTTGGCAGGTTCTGGAATCACTTTCAGACAGAGCTGCCTCTATCGGCACCAGACTGGGACGCTTTCCTTCAGATCGCCCGTGAAGCAGACACGAGCAGCGAGGGCAGTAACAGCTGCGCTCTATCTTAACACTATCACACAGAGCACGCTTATCAGCACTGCTTAAGTGTTTCTGATGCTGCTTCTCTTCTGCTGAAAGGGTGTCAAAGAACATGATCTGGTGCATGATGTGGTTTACGTTCCACGTAGTGTACGTTATTGTTGCTCCtctttttatatacatgcacaaacagctttcaacactccaaagagaaactCGAAATCTCACCGTATGAGCCTTTAATAACTGTGGGACAAAGACGAAACACTACTTGAGGTGGAGGGGAAGATCTGATTCTGATCACATGAATATAATCGTTTGTTTTCTTCATCGTGGTGGTTTTATGTCTCTTTACATCAggttattatattactgtattatttatgaaatgtgttgattttttccccctcggTTGTTGGTGGcctgtttgattgtttttattttaatccacTACTGAACAATAATCATGTCGGGTTATTACATGGAATTATATTTGAATTGCTTCGTAAGCAATAAAAGTGGCATTTTGCTAACAATGTATGCGAGACCACGTTTTCATACCGATGTGTGTATAATCatgcaaatgcaattttatgcatatatagtTTGCGACGAAAAGAATTATGAATCATTGCCAGTGACgaaaaaaacttatttgaatCCCACTGGAAAATAGAACAAACATGTGCATAAATGTACTGcaattctaaaataattctACTGTTGCATTGGAATCGCTAAAATAAGAGGAACGGTTCATTAAATTGCTTAAATGCATAAACAGGAAACATGACACATTGCTGCAGACTGCTGACATCCATGCAGACCTTTAGAAACGAGTTTCGGTTTTGCAAACCTCTCTTCGTTCAGATCATTTAGCCAATATAACCTCATAGAAGGATTTAAATGGTGTCGAGGTTTAATCCAGCATTCAGGGTTTTTCACATGTTTGTTTGATAGAAACAGGGCCAGACAGAAGCTGACTGCATGCAACGTGCATAAACACTCACGACCAGACTAGTTACTTCTCTATTGATTCACTAATTACAGATTATTTACACAGTATAGCAGTAGATTACATTTTCTTCTCTAAAACAGTCCACCACTTACGTGCATTAACCTAACCTGAAACAACCCAGCCGGGAGACTTCCTGAATATATACATGAGCGGtaagtttcagaaaaaaaatgaaagagaagaATTAGGCAGTAATAAGTGATGAATAATGTATAGCTAT
>XM_043236793.1
ctcacacacacacacacacacacacacacacacacacacacacacacacacacacataaactcaGACCAGCCTCTTCCTGCTCACATTTACCTCAGCACCTACAGCAAAAGATCTGAAGCACAATGACGTCTCAGGTCTCGAAGACTGTCCTGCGACTGGAGGCTGAAGACGTCCGGGCTCTGAAAGATGGAATTAATTTCAAGAAAAACCAAAAGGACGGCAAATGCTACATCATTTACAAGAGCGAAGGAAAGATACGAGCGTGTGTGAACCAGTGCAAACACCAGGGAGGACTCTTTATTAAAGACATAGAAGACACGGACGGCAGAACGGTGCGCTGCACCAAACACTACTGGAAACTTAACGTGGCCACTATGGAGTACGTCAACCCTCCAGACAGCTTCATGCAGGACGAGCTCgAGACAGTGCTGTCGGACGCTGATGGTGGTTTAGAGCTGCTGGAGCTGAATCCTCCAGACCCCTGGACCTCAGAGCCCAGAGAAACACAAGAGCTGCTCGACGGAGAGATGACGCTGACGTACATCACGCACGCGTGCATGGAGCTGAAAGCGGGGGACAAGCGGATGATGTTCGACCCGTGGCTCACGGGCCCCGCGTTCGCGAGAGGCTGGTGGCTCCTCCACGAGCCTCCGTCCGACGCCATGGACAGACTCATCAGAGCCGATCTGGTTTACATCAGCCACATGCATTCAGATCACCTGAGCTACCCGACTTTGCAGCGCCTTTCCAAGGAGCGTCCGGATATTCCCATTTACGTTGGAGACACTTCACGGCCGGTGTTTTGGTATCTGGAGAAAAGCGGAGTGAATTTAACAAACATCAACGTGGTGCCCTTCGGCGTGTGGCAGAACGTGGATGAACACCTGCGATTCATGATTCTGATGGACGGAGTTCATCCCGAGATGGACACCTGCTTGATCGTGGAGTATAAAGGTCACATGGTCCTGAATACGGTGGACTGCACCAGACCAAACAACGGCCGTCTTCCTCACGGCGTCGACCTGATGATGAGTGACTTCGCCGGCGGTGCCTCCGGTTTTCCCATGACCTTTCACGGCGGAAAATACACCGAGAGCTGGAAGGCAGATTTCATCAAGGCCGAGAGGAAGAAGCTGTCGAACTATAAGACGCAGCTGGTGAAGTCCCTGCAGCCCAAGATCTACTGCCCTTTTGCAGGATACTTCACTGAAGCTCATCCCTCTGACAGGTACATAAAGAGGACGAACATCAAGAACAGCGCGGAAGGTCTGAATGAATCAATAAGAAAGAGCTGTCCAAACATCCTAACCTGGACTCCTGTGCCTGGATCTGTCCTGGACTTAGCCCTTGCTCTCAGTGACCCGTCCAGCAGGAATGTCTTCACTGAGCCGCCCAGCGGCACAAAGATCAATAAGGACAGTTGGGATTTTGACTTGTATTTGGATGAACTGAATGCTTCTGTTTCAGCTGAAATCTTTCAATACAAAAGCTGGATCCAGTGCTATTATAACTGGGCAGGATTTAAAGACTATAATCTGGTTATTCGGGTCATTGAGACGGATGATGATTTCAAGCCTCTGAAAGGAGGTTATGACTATCTGGTGGACTTTCTGGATCTTTCTTTCCCAGCCGCGCGTCCGGAGAGAGACCACGCGTACGAGGAGatcaAGAACCGAGTGAATGTGATGAGACACGTGGTTCTGAACGGCCGGCTCTGGGACGACCTCTACATCGGCTTCAATAACAGAATGAGTCGGGATCCTGACGTTTACCACCACaaGTTCTGGAATCACTTTCAGACAGAGCTGCCTCTATCGGCACCAGACTGGGACGCTTTCCTTCAGATCGCCCGTGAAGCAGACACGAGCAGCGAGGGCAGTAACAGCTGCGCTCTATCTTAACACTATCACACAGAGCACGCTTATCAGCACTGCTTAAGTGTTTCTGATGCTGCTTCTCTTCTGCTGAAAGGGTGTCAAAGAACATGATCTGGTGCATGATGTGGTTTACGTTCCACGTAGTGTACGTTATTGTTGCTCCtctttttatatacatgcacaaacagctttcaacactccaaagagaaactCGAAATCTCACCGTATGAGCCTTTAATAACTGTGGGACAAAGACGAAACACTACTTGAGGTGGAGGGGAAGATCTGATTCTGATCACATGAATATAATCGTTTGTTTTCTTCATCGTGGTGGTTTTATGTCTCTTTACATCAggttattatattactgtattatttatgaaatgtgttgattttttccccctcggTTGTTGGTGGcctgtttgattgtttttattttaatccacTACTGAACAATAATCATGTCGGGTTATTACATGGAATTATATTTGAATTGCTTCGTAAGCAATAAAAGTGGCATTTTGCTAACAATG

Function

symbol description
cmah Predicted to enable 2 iron, 2 sulfur cluster binding activity; CMP-N-acetylneuraminate monooxygenase activity; and metal ion binding activity. Predicted to be involved in N-acetylneuraminate metabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human CMAHP (cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene).

NR:

description
cytidine monophosphate-N-acetylneuraminic acid hydroxylase

GO:

id name namespace
GO:0006054 N-acetylneuraminate metabolic process biological_process
GO:0046381 CMP-N-acetylneuraminate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006810 transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function
GO:0030338 CMP-N-acetylneuraminate monooxygenase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36599 True 2630 lncRNA 0.37 2 191392 194183
XM_043236793.1 False 2411 mRNA 0.49 15 184716 193483

Neighbor

gene id symbol gene type direction distance location
frs2a frs2,frs2a,LOC107658966,LOC107590545,LOC107729158 coding upstream 77411 90208 ~ 107305 (+)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 coding upstream 95564 87004 ~ 89152 (+)
LOC122343428 lmod2b,LOC107726005,LOC107584027,LOC107656401,LOC107581005,LOC107711505 coding upstream 166812 13818 ~ 17904 (+)
LOC122343427 asb15b,LOC107726003,LOC107658939,LOC107583946,LOC107656400,LOC107581016,LOC107711503 coding upstream 171598 9542 ~ 13118 (+)
glipr1a NA coding downstream 909 195092 ~ 199536 (+)
LOC122343357 LOC107658963,LOC107708011,LOC107555883 coding downstream 11322 205505 ~ 213159 (+)
zdhhc17 zdhhc17,LOC107708015,LOC107658960,LOC107656450 coding downstream 149409 343592 ~ 360922 (+)
LOC122342832 NA coding downstream 666413 860596 ~ 863551 (+)
LOC122342829 LOC107705336,LOC107583937,LOC107656238 coding downstream 673013 867196 ~ 888759 (+)
G24567 NA non-coding upstream 67825 116199 ~ 116891 (+)
G24554 LOC107729149,LOC108279496,LOC107555887,LOC107708007 non-coding upstream 98128 85235 ~ 86588 (+)
G24553 NA non-coding upstream 102193 75388 ~ 82523 (+)
G24558 wasl,LOC107583945 non-coding upstream 158820 24544 ~ 25896 (+)
G24586 NA non-coding downstream 21792 215975 ~ 281984 (+)
G24587 NA non-coding downstream 48383 242566 ~ 282841 (+)
G24593 phlda1,LOC107708012,LOC107658781,LOC107656271,LOC107729151 non-coding downstream 55989 250172 ~ 252374 (+)
G24594 NA non-coding downstream 59082 253265 ~ 315566 (+)
G24597 nap1l1,LOC107555881,LOC107658961 non-coding downstream 65216 259399 ~ 260703 (+)
G24555 cpsf6 other upstream 99754 83688 ~ 84962 (+)
G24609 NA other downstream 99052 293235 ~ 295069 (+)
G24632 LOC107584022 other downstream 179344 373527 ~ 374082 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other downstream 240160 434343 ~ 439352 (+)
G24771 plekha5,LOC107584023,LOC107658747 other downstream 459909 654092 ~ 665530 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other downstream 1051395 1245578 ~ 1249169 (+)

Expression


Co-expression Network