G24586


Basic Information

Item Value
gene id G24586
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 215975 ~ 281984 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU36617
TcagtctttttcatttatttggtgaTATGTCACAGGTGACGATAAACTCACAGGAAGTTATTTCTGTATTACAAATAAAGCATCATCTGTACATAGAGACAGCTGCAGGAAATGATCCCGCACGAAAACAAAACCGATCAGCTGGAGTAAAAACGCTTTAAAAAGAGCCTGGGGgcgaaaagaaaagaaaagcaagcgAGCAAACCATCTAGAAGCATGAAGACGAACACTGAACGCGATGCATGTGGAGTTTGATCCCCGCGTCGGAGGCAGACGCATGGCTAAAGACACGGATATCTATGGCAGCGTCGAGCTCCGGGACCAGTCTAAAACCTCGGAAATATGGCACATTCACTCgaagtgagaaagaaagacaaaccGTGGTAGGAATTCAACAGTCGGGCTCCAAATCCCTCAGACTCCGGCTGCAAGACCCGCTCGGAAAGGCacgtggttttgttttttttatttaaatagttaaaccGCTGACGTGAGCACATTCGAAACATCTGATTGGACGCTGCGCGAGCGGGAAGGCGCCCGCGGGACCAAGACACGTGGGCTATGGGTGACGCCGCTTCTCTAGAAGCACGACAGGAAATCGGTTCTGGACCGCACACGGACGTTTACGCGCTAATCTAGTCTCAGACTATTTGGCTGGTCGTCGTACATCTAGTCTGACGTAACGGTCAAGCAAACTACAAAAGTACGTGACAGCATTTCCTGCTACAGGTTCACTAGGCCTAGATCTACGGTTTCCTCGGAGGAATGTTACACGTGACGCTCGCTATATACTGTACACGCCTCGGTATCGCTCCAATAAGTTAAACATTATTTCCTTCAAACACCATTTAGGAACGTATGAAATGCgggatccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcgccGTTCGAGATAATCGTTCCCGGGAACggttttaaataatacaaaatttgaCCTCGTCCTTCATTCGCTTCTTAAAATGGTCGTAAAATACAAGTAACGTCAGAAGTATTGAACCCTTTTGAGTTTCGCGTGTGAGCGAAAAAAGTTTCGGTCCCcgtatattttcatttttaggagagcatttcctttttttttcattgctataACGCGtctgtaaaattgtatttaaatcagGCAGTGCAATGAATACTATTACgtacaaatactaataaaaattttgCACTTGATAAATCATGATGATCTGTCGTGAAATGTGCTTATTTGTCACGAACGTTATAGCTAAATATGTAgaactgggttttttttgttgagtgaaatgcatattttcccTAATTTTAAGGGGGAAAGTTGACCTAGATTTTATAAAgtttgttttgtatataaacGGACGTCCTCCAGTGCAGCAGGGGGCGCTGATGGAGGgcgatttgtttttaataaaaacaaataaaccaatGGTCCAAATggttgaaaataaaatttttgaaaaataaaagtaaacagtCATTACTAAAACatcccacaatgcacttcaGTCCAATATTGGCCATCCTTTTGCAACAAAATtcctaaaatgaaacaaatagaAACCAAATGTGTAGAATAGGGATTTTGatg
>TU36619
cacacacacacaaactcacacacacacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcgccGTTCGAGATAATCGTTCCCGGGAACggttttaaataatacaaaatttgaCCTCGTCCTTCATTCGCTTCTTAAAATGGTCGTAAAATACAAGTAACGTCAGAAGTATTGAACCCTTTTGAGTTTCGCGTGTGAGCGAAAAAAGTTTCGGTCCCcgtatattttcatttttaggagagcatttcctttttttttcattgctataACGCGtctgtaaaattgtatttaaatcagGCAGTGCAATGAATACTATTACgtacaaatactaataaaaattttgCACTTGATAAATCATGATGATCTGTCGTGAAATGTGCTTATTTGTCACGAACGTTATAGCTAAATATGTAgaactgggttttttttgttgagtgaaatgcatattttcccTAATTTTAAGGGGGAAAGTTGACCTAGATTTTATAAAgtttgttttgtatataaacGGACGTCCTCCAGTGCAGCAGGGGGCGCTGATGGAGGGtgatagaaataaaacaatggtCCAAATGGTTGATGAGGTTTcctcatttttgaaaaacaatagtAAACATTCATTACTAAaacatcccacaatgcacttcaGTCCAATATTGGCCATCCTTTTGCAACAAAATtcctaaaatgaaacaaatagaAACCAAATGTGTAGAATAGGGATTTTGatg
>TU36620
TcagtctttttcatttatttggtgaTATGTCACAGGTGACGATAAACTCACAGGAAGTTATTTCTGTATTACAAATAAAGCATCATCTGTACATAGAGACAGCTGCAGGAAATGATCCCGCACGAAAACAAAACCGATCAGCTGGAGTAAAAACGCTTTAAAAAGAGCCTGGGGgcgaaaagaaaagaaaagcaagcgAGCAAACCATCTAGAAGCATGAAGACGAACACTGAACGCGATGCATGTGGAGTTTGATCCCCGCGTCGGAGGCAGACGCATGGCTAAAGACACGGATATCTATGGCAGCGTCGAGCTCCGGGACCAGTCTAAAACCTCGGAAATATGGCACATTCACTCgaagtgagaaagaaagacaaaccGTGGTAGGAATTCAACAGTCGGGCTCCAAATCCCTCAGACTCCGGCTGCAAGACCCGCTCGGAAAGGCacgtggttttgttttttttatttaaatagttaaaccGCTGACGTGAGCACATTCGAAACATCTGATTGGACGCTGCGCGAGCGGGAAGGCGCCCGCGGGACCAAGACACGTGGGCTATGGGTGACGCCGCTTCTCTAGAAGCACGACAGGAAATCGGTTCTGGACCGCACACGGACGTTTACGCGCTAATCTAGTCTCAGACTATTTGGCTGGTCGTCGTACATCTAGTCTGACGTAACGGTCAAGCAAACTACAAAAGTACGTGACAGCATTTCCTGCTACAGGTTCACTAGGCCTAGATCTACGGTTTCCTCGGAGGAATGTTACACGTGACGCTCGCTATATACTGTACACGCCTCGGTATCGCTCCAATAAGTTAAACATTATTTCCTTCAAACACCATTTAGGAACGTATGAAATGCgggatccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcgccGTTCGAGATAATCGTTCCCGGGAACggttttaaataatacaaaatttgaCCTCGTCCTTCATTCGCTTCTTAAAATGGTCGTAAAATACAAGTAACGTCAGAAGTATTGAACCCTTTTGAGTTTCGCGTGTGAGCGAAAAAAGTTTCGGTCCCcgtatattttcatttttaggagagcatttcctttttttttcattgctataACGCGtctgtaaaattgtatttaaatcagGCAGTGCAATGAATACTATTACgtacaaatactaataaaaattttgCACTTGATAAATCATGATGATCTGTCGTGAAATGTGCTTATTTGTCACGAACGTTATAGCTAAATATGTAgaactgggttttttttgttgagtgaaatgcatattttcccTAATTTTAAGGGGGAAAGTTGACCTAGATTTTATAAAgtttgttttgtatataaacGGACGTCCTCCAGTGCAGCAGGGGGCGCTGATGGAGGGtgatagaaataaaacaatggtCCAAATGGTTGATGAGGTTTcctcatttttgaaaaacaatagtAAACATTCATTACTAAaacatcccacaatgcacttcaGTCCAATATTGGCCATCCTTTTGCAACAAAATtcctaaaatgaaacaaatagaAACCAAATGTGTAGAATAGGGATTTTGatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36617 True 1621 lncRNA 0.42 2 279999 281984
TU36619 False 797 lncRNA 0.37 3 215975 281984
TU36620 False 1611 lncRNA 0.43 2 279999 281984

Neighbor

gene id symbol gene type direction distance location
LOC122343357 LOC107658963,LOC107708011,LOC107555883 coding upstream 2816 205505 ~ 213159 (+)
glipr1a NA coding upstream 16439 195092 ~ 199536 (+)
frs2a frs2,frs2a,LOC107658966,LOC107590545,LOC107729158 coding upstream 108670 90208 ~ 107305 (+)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 coding upstream 126823 87004 ~ 89152 (+)
LOC122343428 lmod2b,LOC107726005,LOC107584027,LOC107656401,LOC107581005,LOC107711505 coding upstream 198071 13818 ~ 17904 (+)
zdhhc17 zdhhc17,LOC107708015,LOC107658960,LOC107656450 coding downstream 61608 343592 ~ 360922 (+)
LOC122342832 NA coding downstream 578612 860596 ~ 863551 (+)
LOC122342829 LOC107705336,LOC107583937,LOC107656238 coding downstream 585212 867196 ~ 888759 (+)
fgd4b LOC107658950,LOC107705337,LOC107656390,LOC107590534,LOC107584024 coding downstream 608713 890697 ~ 908324 (+)
nampt1 nampt,nampta,LOC107658946,LOC107705339,LOC107656408,LOC107718548,LOC102790888 coding downstream 635598 917582 ~ 931678 (+)
G24567 NA non-coding upstream 99084 116199 ~ 116891 (+)
G24554 LOC107729149,LOC108279496,LOC107555887,LOC107708007 non-coding upstream 129387 85235 ~ 86588 (+)
G24553 NA non-coding upstream 133452 75388 ~ 82523 (+)
G24558 wasl,LOC107583945 non-coding upstream 190079 24544 ~ 25896 (+)
G24628 NA non-coding downstream 80458 362442 ~ 362768 (+)
G24631 NA non-coding downstream 90390 372374 ~ 372853 (+)
G24633 NA non-coding downstream 92574 374558 ~ 374844 (+)
G24634 NA non-coding downstream 93941 375925 ~ 376208 (+)
G24635 e2f7,LOC107656240,LOC107707966,LOC107658780 non-coding downstream 97219 379203 ~ 379444 (+)
cmah cmah,LOC107555874,LOC107729160,LOC107656456,LOC107590555 other upstream 21792 184716 ~ 194183 (+)
G24555 cpsf6 other upstream 131013 83688 ~ 84962 (+)
G24609 NA other downstream 11251 293235 ~ 295069 (+)
G24632 LOC107584022 other downstream 91543 373527 ~ 374082 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other downstream 152359 434343 ~ 439352 (+)
G24771 plekha5,LOC107584023,LOC107658747 other downstream 372108 654092 ~ 665530 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other downstream 963594 1245578 ~ 1249169 (+)

Expression


Co-expression Network