G24597 (nap1l1,LOC107555881,LOC107658961)


Basic Information

Item Value
gene id G24597
gene name nap1l1,LOC107555881,LOC107658961
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 259399 ~ 260703 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU36635
ATGGGCTGGCCTGCATCTGAGAATTTTACTTTAATGTCTTGTAAGTGCTTTAGGATTGGTTCATCATGCTCCTggaATTTCGCTGAGAAGGTCGACATTCTTGAAAACCGTGAGCCAGAATTCTGGGATCCCTTTAGGGTCTTCCTTCTCCTCgtctttcttctcctcctccactTTGGCCTTTTCCTTCATTTCCTCCTGtgtcagctcttcctcttcatcttgTTTCCACTCACACTCCTCATCTGTGGGTTCGTACGCTGCTCTCACGATATCACTCCGCTAAAGACaagtttaaaacattaatcCAAGGCATTTCTAGAAGTTAAAACTAGAGAAGTAAACTAGTGAATCAATTACTCAGATTCAGCTGATTTACAATGAATCCGTTTAGTTACTATGCTAAACCAGGgttgtcaaaataaatgttattttattactacaaataataaaaaaaggaagtaaaaaTACACACTTAA

Function

symbol description
nap1l1 Predicted to enable chromatin binding activity and histone binding activity. Acts upstream of or within response to yeast. Predicted to be active in chromatin and nucleus. Is expressed in several structures, including immature eye; nervous system; neural tube; pharyngeal arch; and pronephros. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to several human genes including NAP1L1 (nucleosome assembly protein 1 like 1).

NR:

description
PREDICTED: nucleosome assembly protein 1-like 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36635 True 479 lncRNA 0.39 3 259399 260703

Neighbor

gene id symbol gene type direction distance location
LOC122343357 LOC107658963,LOC107708011,LOC107555883 coding upstream 46240 205505 ~ 213159 (+)
glipr1a NA coding upstream 59863 195092 ~ 199536 (+)
frs2a frs2,frs2a,LOC107658966,LOC107590545,LOC107729158 coding upstream 152094 90208 ~ 107305 (+)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 coding upstream 170247 87004 ~ 89152 (+)
LOC122343428 lmod2b,LOC107726005,LOC107584027,LOC107656401,LOC107581005,LOC107711505 coding upstream 241495 13818 ~ 17904 (+)
zdhhc17 zdhhc17,LOC107708015,LOC107658960,LOC107656450 coding downstream 82889 343592 ~ 360922 (+)
LOC122342832 NA coding downstream 599893 860596 ~ 863551 (+)
LOC122342829 LOC107705336,LOC107583937,LOC107656238 coding downstream 606493 867196 ~ 888759 (+)
fgd4b LOC107658950,LOC107705337,LOC107656390,LOC107590534,LOC107584024 coding downstream 629994 890697 ~ 908324 (+)
nampt1 nampt,nampta,LOC107658946,LOC107705339,LOC107656408,LOC107718548,LOC102790888 coding downstream 656879 917582 ~ 931678 (+)
G24593 phlda1,LOC107708012,LOC107658781,LOC107656271,LOC107729151 non-coding upstream 7025 250172 ~ 252374 (+)
G24567 NA non-coding upstream 142508 116199 ~ 116891 (+)
G24554 LOC107729149,LOC108279496,LOC107555887,LOC107708007 non-coding upstream 172811 85235 ~ 86588 (+)
G24553 NA non-coding upstream 176876 75388 ~ 82523 (+)
G24558 wasl,LOC107583945 non-coding upstream 233503 24544 ~ 25896 (+)
G24599 NA non-coding downstream 753 261456 ~ 261964 (+)
G24628 NA non-coding downstream 101739 362442 ~ 362768 (+)
G24631 NA non-coding downstream 111671 372374 ~ 372853 (+)
G24633 NA non-coding downstream 113855 374558 ~ 374844 (+)
G24634 NA non-coding downstream 115222 375925 ~ 376208 (+)
cmah cmah,LOC107555874,LOC107729160,LOC107656456,LOC107590555 other upstream 65216 184716 ~ 194183 (+)
G24555 cpsf6 other upstream 174437 83688 ~ 84962 (+)
G24609 NA other downstream 32532 293235 ~ 295069 (+)
G24632 LOC107584022 other downstream 112824 373527 ~ 374082 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other downstream 173640 434343 ~ 439352 (+)
G24771 plekha5,LOC107584023,LOC107658747 other downstream 393389 654092 ~ 665530 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other downstream 984875 1245578 ~ 1249169 (+)

Expression


Co-expression Network