LOC122343420 (wasla,LOC107753630,LOC107598884,LOC107659464,LOC107725914,LOC107658745,LOC107656407,LOC107698525,LOC107752346,LOC107575727)


Basic Information

Item Value
gene id LOC122343420
gene name wasla,LOC107753630,LOC107598884,LOC107659464,LOC107725914,LOC107658745,LOC107656407,LOC107698525,LOC107752346,LOC107575727
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 19991 ~ 33927 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU36762
TGTTGGATTGAAGGATCGTTATTGCTTTAGGAGTTCGGAATGAAAGTTTATATTATGCAGTCTGTCAAAAGTGAGCgaattaaagaataaataaccCACAGGAGTACGCGAGTCGCGTCCGCACCCCCAGCGCATTGAGGACCACACTGCGTCGGCTCTGCTTGCGTGCGGAATTCCTTACGGGATGAACGGAGCGCAGGCCATGTTGATCTGTGATTGCACATGAAATAATCTAATACGAGACAAACGCTCAAGTTCATCCGCCTCATCCGTCGACATGAGCGGCCACCCGCCCCAGAGGAGGGTGGCAAACGTGGGCTCTATGCTTCTGACCCCGCAGGAGAACGAGTGTCTGTTCAACTACCTGGGCAGGAAATGCATCACATTGTGCTCAGCGGTGGTCCAGGTGTACGGAGCGGACAGGGGCTCGTCCTGGATCAAGAGGTGCTGTGGTGTGGCCTGTTTGGTGAAAGACAACCCTCAGAGGTCTTATTTTATCCGTGTCTTCGATATCAAGGACGGAAAAACAAGATTTGAGCAGGAGCTTTATAATAATTTCGCCATCAGTAGTTCGAGAGCCTACTTCGTTACTTTCGCCGGAGATTCTTGTCAGATGGGCCTCAACTTTGCCAGTGAAGAGGAAGCCAAACGATTTCGGAGCGCACTCAACGAACTGCTCAACAGACGACAGAGGAAAACTGG
>XM_043237876.1
TCCTGCTGCCATGTTGGATTGAAGGATCGTTATTGCTTTAGGAGTTCGGAATGAAAGTTTATATTATGCAGTCTGTCAAAAGTGAGCgaattaaagaataaataaccCACAGGAGTACGCGAGTCGCGTCCGCACCCCCAGCGCATTGAGGACCACACTGCGTCGGCTCTGCTTGCGTGCGGAATTCCTTACGGGATGAACGGAGCGCAGGCCATGTTGATCTGTGATTGCACATGAAATAATCTAATACGAGACAAACGCTCAAGTTCATCCGCCTCATCCGTCGACATGAGCGGCCACCCGCCCCAGAGGAGGGTGGCAAACGTGGGCTCTATGCTTCTGACCCCGCAGGAGAACGAGTGTCTGTTCAACTACCTGGGCAGGAAATGCATCACATTGTGCTCAGCGGTGGTCCAGGTGTACGGAGCGGACAGGGGCTCGTCCTGGATCAAGAGGTGCTGTGGTGTGGCCTGTTTGGTGAAAGACAACCCTCAGAGGTCTTATTTTATCCGTGTCTTCGATATCAAGGACGGAAAAACAAGATTTGAGCAGGAGCTTTATAATAATTTCGCCATCAGTAGTTCGAGAGCCTACTTCGTTACTTTCGCCGGAGATTCTTGTCAGATGGGCCTCAACTTTGCCAGTGAAGAGGAAGCCAAACGATTTCGGAGCGCACTCAACGAACTGCTCAACAGACGACAGAGGAAAACTGGTAAATGTGCTGCGCCCCCTaacttGAATTTGACCGTTTCAGGACCCTCAGGACCTTCGGGACCAACACTTCCAATGGCGACGGTGGACATCAAGAACCCCGAAATCAACAACCAGCGTTATCAAAACAACACTCAAATGAACAACATTAATCTCCACAGCAACTTCAacagaaaagacaaaagcaaaggcaagaacaagaagaagaaaatatccAAAGCTGAGATCGGCACCCCGAGCAATTTCCGgCATGTAGGCCATGTCGGCTGGGATCCCAACACAGGCTTTGACTTGAATAATCTGGACCCGGAGCTCAAGAACCTGTTTGACATGTGTGGCATTTCCGAGGCCCAGCTCAAAGACAAAGAGACGTCTAAAGACATCTACGAATTCATTGAGCAGAGAGGAGGAGTAGAGGCCGTCAAAAATGAGTTACGAAGACAAGcacctccacctccaccatCCAGAGGAGggcctcctcctccacctcctcatAACTCTGGTCCTCCTCCCCCACCTCCCTCCAGAGGCCGAGGAGCACCGCCTCCACCGCCTCCATCCAGAGTGCCCACCTccgctcctcctccacctcctccccCCTCCCGACCAGGTATGGGCGCACCTCCACCTCCTCCCCCCAGCAGAGGTCCCGGGGcggctcctcctccacctcctccaccccAGCCTGCCTCCCTGTCTCCTCTggctcctccacctcctcttcCTTCTTCAGTGGGCGGAGCACCTCCTCCACCGCCGCCGCCGCCTCCAGGACCCCCTCCTCCCGCACCTCCTCCTCTACCGGACGGGGATTTAGGAGAAGCACCGGGGGGTAAATCTGCACTCCTGAACCAAATTCGAGAAGGAGCACAGCTGAAGAAAGTGGACCAAAACAACAAGCCGCCCGTGTCCGGAGGCGGCCGTGACGCACTCTTAGACCAAATACGACAGGGCATTCAGCTTAAAAATGTAACGGACGCTACGGACTCCACTCCCTCCACCCCTGCCCCTTCCGCTGGGATCGTGGGGGCGCTGATGGAGGTCATGCAGAAGAGGAGCAAAGCGATCCACTCTTCAGATGAAGACGATGACGATGACGATGTAGAAGACTTTGAGGATGAAGATGAGTGGGATGACTGATGACCAGGGCTGCCCAAAAGAATAAGACACTACATTGCTCTTGACATTCGAAATCttataaattgtaatgtaaatggACGA

Function

symbol description
wasla Predicted to enable actin binding activity. Acts upstream of or within macrophage differentiation and thrombocyte differentiation. Predicted to be located in nucleus. Predicted to be active in actin filament. Is expressed in caudal fin. Orthologous to human WASL (WASP like actin nucleation promoting factor).

NR:

description
neural Wiskott-Aldrich syndrome protein

GO:

id name namespace
GO:2000601 positive regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K23612 WASL; neural Wiskott-Aldrich syndrome protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU36762 False 702 TUCP 0.51 4 28072 33916
XM_043237876.1 True 1932 mRNA 0.53 11 19991 33927

Neighbor

gene id symbol gene type direction distance location
cpsf6 cpsf6,LOC107729149,LOC108279496,LOC107555887,LOC107708007 coding upstream 41454 75381 ~ 86610 (-)
kcnc2 kcnc2,LOC107555885 coding upstream 102076 136003 ~ 171334 (-)
ccdc107 ccdc107,si:ch73-278m9.1,LOC107656458,LOC107729159,LOC107555866 coding upstream 143346 177273 ~ 184430 (-)
krr1 krr1 coding upstream 165884 199811 ~ 205364 (-)
phlda1 phlda1,LOC107708012,LOC107658781,LOC107656271,LOC107729151 coding upstream 216214 250141 ~ 252421 (-)
G24713 NA non-coding upstream 157469 191396 ~ 194159 (-)
G24712 NA non-coding upstream 171966 205893 ~ 208820 (-)
G24724 LOC107555883,LOC107708011,LOC107658963 non-coding upstream 178678 212605 ~ 213246 (-)
G24792 NA non-coding upstream 570956 604883 ~ 605114 (-)
G24795 NA non-coding upstream 578464 612391 ~ 612843 (-)
G24689 asb15b,LOC107726003,LOC107658939,LOC107583946,LOC107656400,LOC107711503 other downstream 8890 10833 ~ 11101 (-)
si:dkey-97m3.1 NA other upstream 13683 47610 ~ 73681 (-)
G24708 NA other upstream 152533 186460 ~ 191242 (-)
osbpl8 osbpl8,LOC107555879,LOC107656451 other upstream 246071 279998 ~ 341953 (-)
slco1c1 slco1c1,LOC107708018,LOC107583931,LOC107658953,LOC107729145,LOC107656392,LOC107590530,LOC108435080 other upstream 372715 406642 ~ 496868 (-)
pik3cg pik3cg,LOC107658948,LOC107656384,LOC107583938,LOC107705338,LOC107590535,LOC107584052 other upstream 830757 864684 ~ 933108 (-)

Expression


Co-expression Network