G24724 (LOC107555883,LOC107708011,LOC107658963)


Basic Information

Item Value
gene id G24724
gene name LOC107555883,LOC107708011,LOC107658963
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 212605 ~ 213246 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU36801
AGTCGCTtgcacttaaaaacaaaacacaaatacagtccGTTGAGGAATGAACGATCTCGTCGGTTTCTTCTCACGGATATATTCCCAGCGCGTCCCAGAAGTCGCAGATGCCGTCCCGTGATCCGCTCTGCGCGTGTGAATGTAGCGTGAGGTTCAGGACCAGCCAGCCGCTGTCAGCCGTGTAGCGCGGCCAGGCCGGAGGACGCCGCCGCCGGCAGAACGCGCTGGAGTCCGCGTGAGCTCCGGGCTCTCCGGCGTGAGCGAACGAGCCCCAGTAACACAGCGTCCGGTCGGACAGCAGCCGCTCCGCCGGAGTCATGCTGAGATTCGCCGCCGGCGCCGAGTCGAACACGAAGGGCAGCTCCGCGCCGTGACACGCGTGACGGTAACAGAACGTCAGGCCCGACCACAAGCCCGGGTCGCTCGGCGCGTGATCGAACACGTACATCCACACCGAGCTACCGGAGGCCGCGGCGGCGCGCGCAGACCTCCGCG
>TU36802
aaacacgtttattttggacgcgattaatcgcgattaatcgttcACTCTTCAGTCGCTtgcacttaaaaacaaaacacaaatacagtccGTTGAGGAATGAACGATCTCGTCGGTTTCTTCTCACGGATATATTCCCAGCGCGTCCCAGAAGTCGCAGATGCCGTCCCGTGATCCGCTCTGCGCGTGTGAATGTAGCGTGAGGTTCAGGACCAGCCAGCCGCTGTCAGCCGTGTAGCGCGGCCAGGCCGGAGGACGCCGCCGCCGGCAGAACGCGCTGGAGTCCGCGTGAGCTCCGGGCTCTCCGGCGTGAGCGAACGAGCCCCAGTAACACAGCGTCCGGTCGGACAGCAGCCGCTCCGCCGGAGTCATGCTGAGATTCGCCGCCGGCGCCGAGTCGAACACGAAGGGCAGCTCCGCGCCGTGACACGCGTGACGGTAACAGAACGTCAGGCCCGACCACAAGCCCGGGTCGCTCGGCGCGTGATCGAACACGTACATCCACACCGAGCTACCGGAGGCCGCGGCGGCGCGCGCAGACCTCCGCG
>TU36803
aaatatatgaatgtaaatattctctcaatatatactgcatgtgtgctttaaaacaaacaccACATATACACAGTGcgcacacatttgttttgtgaacaaacacgtttattttggacgcgattaatcgcgattaatcgttcACTCTTCAGTCGCTtgcacttaaaaacaaaacacaaatacagtccGTTGAGGAATGAACGATCTCGTCGGTTTCTTCTCACGGATATATTCCCAGCGCGTCCCAGAAGTCGCAGATGCCGTCCCGTGATCCGCTCTGCGCGTGTGAATGTAGCGTGAGGTTCAGGACCAGCCAGCCGCTGTCAGCCGTGTAGCGCGGCCAGGCCGGAGGACGCCGCCGCCGGCAGAACGCGCTGGAGTCCGCGTGAGCTCCGGGCTCTCCGGCGTGAGCGAACGAGCCCCAGTAACACAGCGTCCGGTCGGACAGCAGCCGCTCCGCCGGAGTCATGCTGAGATTCGCCGCCGGCGCCGAGTCGAACACGAAGGGCAGCTCCGCGCCGTGACACGCGTGACGGTAACAGAACGTCAGGCCCGACCACAAGCCCGGGTCGCTCGGCGCGTGATCGAACACGTACATCCACACCGAGCTACCGGAGGCCGCGGCGGCGCGCGCAGACCTCCGCG

Function

NR:

description
PREDICTED: crystal protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36801 False 495 lncRNA 0.65 1 212605 213099
TU36802 False 545 lncRNA 0.63 1 212605 213149
TU36803 True 642 lncRNA 0.58 1 212605 213246

Neighbor

gene id symbol gene type direction distance location
krr1 krr1 coding downstream 7241 199811 ~ 205364 (-)
ccdc107 ccdc107,si:ch73-278m9.1,LOC107656458,LOC107729159,LOC107555866 coding downstream 28175 177273 ~ 184430 (-)
kcnc2 kcnc2,LOC107555885 coding downstream 41271 136003 ~ 171334 (-)
cpsf6 cpsf6,LOC107729149,LOC108279496,LOC107555887,LOC107708007 coding downstream 125995 75381 ~ 86610 (-)
phlda1 phlda1,LOC107708012,LOC107658781,LOC107656271,LOC107729151 coding upstream 36895 250141 ~ 252421 (-)
nap1l1 nap1l1,LOC107656454,LOC107555881,LOC107658961 coding upstream 40020 253266 ~ 267765 (-)
csrp2 csrp2,LOC107708016,LOC107658959,LOC107656449 coding upstream 146921 360167 ~ 369423 (-)
e2f7 e2f7,LOC107707966,LOC107658780,LOC107656240,LOC107576735,LOC107584022 coding upstream 158624 371870 ~ 383326 (-)
cog5 cog5,LOC107583928,LOC107658957,LOC107656447,LOC107590548,LOC107729135,LOC106609192 coding upstream 170233 383479 ~ 449062 (-)
G24712 NA non-coding downstream 3785 205893 ~ 208820 (-)
G24713 NA non-coding downstream 18446 191396 ~ 194159 (-)
G24792 NA non-coding upstream 391637 604883 ~ 605114 (-)
G24795 NA non-coding upstream 399145 612391 ~ 612843 (-)
G24796 NA non-coding upstream 399881 613127 ~ 613653 (-)
G24799 NA non-coding upstream 406931 620177 ~ 620588 (-)
G24802 NA non-coding upstream 410083 623329 ~ 624257 (-)
G24708 NA other downstream 21363 186460 ~ 191242 (-)
si:dkey-97m3.1 NA other downstream 138924 47610 ~ 73681 (-)
LOC122343420 wasla,LOC107753630,LOC107598884,LOC107659464,LOC107725914,LOC107658745,LOC107656407,LOC107698525,LOC107752346,LOC107575727 other downstream 178678 19991 ~ 33927 (-)
G24689 asb15b,LOC107726003,LOC107658939,LOC107583946,LOC107656400,LOC107711503 other downstream 201504 10833 ~ 11101 (-)
osbpl8 osbpl8,LOC107555879,LOC107656451 other upstream 66752 279998 ~ 341953 (-)
slco1c1 slco1c1,LOC107708018,LOC107583931,LOC107658953,LOC107729145,LOC107656392,LOC107590530,LOC108435080 other upstream 193396 406642 ~ 496868 (-)
pik3cg pik3cg,LOC107658948,LOC107656384,LOC107583938,LOC107705338,LOC107590535,LOC107584052 other upstream 651438 864684 ~ 933108 (-)
G24875 NA other upstream 855914 1069160 ~ 1070096 (-)
ptprz1b ptprz1,ptprz1b,LOC107725913,LOC107656236,LOC107658935,LOC107581028 other upstream 1076068 1289314 ~ 1323397 (-)

Expression


Co-expression Network