G24768 (LOC107718544,LOC107658747,LOC107590532)


Basic Information

Item Value
gene id G24768
gene name LOC107718544,LOC107658747,LOC107590532
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 649509 ~ 651593 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU36856
cacgcacacaaaaaaaccaTCACATTCCATTAAACGTATTTGGGAAGCATCAGACAGCATAAACGGCATCCTTACTGTTCTGGGATCAGGTTTCTTGCTCTTCCTCAAGGTAACATAAGACGCAATGGTGGAGGATTCGGGCATGGGTGATTTAGTCCTGGGACTGACCACTCCGACGGGGTAAACTACACCTGATCGAGAGAGGAACACTTTGGTGATGCCGGCCTGCTCCTTCTCTGCCATCTGCTCAGATTTGTCTTCGCCGTTGCTTTCGTCGACCTCGGCTACGGTGGTGAGCTCCGGCTCGCTCTTATACAGTCTGTAATCCGGCCCCTGAGAGCAGAGATTTCACCTGTTTACACACCATTTACAGCCATTCTTTCTGCCGCCACCGGAAGGCTATGATCACggattacatattaaaatgggAATAAAGAACAAACTAAGCCTGGCGAAGGATGAGCTACAAACCTACGCAGTGCTGCTGATCTACTGAACGTCTTGCAGGAAGTGCTCGAGGACGAGCGTTTGATAAAAACCAAAAGCAAAAAGCACTTGAAATGCAAACCAACCCAAATGGCttttttgatgaacatgaaTATTCTGCCCAAAACGAAAACGGTGAACTACGTCTTCATTACAGAGGAAAAAAGTTGCACCAGACAAGTTTGTAGTGATATGAGGATGAGAAAATAATGACACAGATGGCTTTTTTAAGGTTAAGTATTCATTCAAAGCTGGTATGTGAAGAGTAGGTGACTGATGTAATACAGGCACCTGATATATgcaatttaatattcaaatgagctaaataaaatagaaataatattcatacatttcatttagGAATGTTTAATGGTTGCTCTTATTGgtgttgttattaatatactttatttattagtaatgaCACTGAATAATCTTCAATATAGgtagtggttttatttttgcatgcatttatttatgtgacgAGCTAAATAACGTCcgtataaatgcataaaaatgtacatgtggtcagtcacaaaaaaattgttaaattctGTATAGGTGGTCAgcaaaaatttacaaaaatgggAAAGAAATCAGGTTAAAATAATTTGAGATGTTACATAATCTATGGGTTGtcagtaaaaacaaattaaaaactaaatatgtctGAAATTGTTTACACTGCTAATGTAAAGGTGGTCAGTATTAActtattacataataattagGGAAATAAATCTGTCTGAAATTGTTTATAAcattaaatgatgtttatgaACAAAAATTGGGAAAAAATCAGGCTGCAATTGTTACATAATACATGGGAGGtcagtaaaaatgaatacaaataaactGTGTTAATGTAAAGGtggttaatataaatgtatcgCATAATAATTGGGAAAACAATGTGGtcagtaaaaatgaatacaggtttttttttttctttgaatgatGTATAAGTGgtcagtaaaaatgtaataaaaaaaatcaggtagAAATAACTGAATATCCATTGATGAAAGGGAATGATTTTTTTGATCTCAGAATAGCAGCTATCTGTTGCTAACAAAGCCCGATCTGGACTGGGTTTCTGAGGATGGGTTAATGAAGATGGGGTGGGATGGGCGAGGGGTCACAGCTCTGTCTTACGCTGTGGGCACCGTTGCGCTGGGCAGCCTTGCGGTCCTCGGGCCGGTGAGGGGTGGTGCGGGGCGCGTGAGGAGGACGCTCTCCCCCCTCGTACGAGTACGGGAGCGGAGGACGAGGAGGCACCGAGTCTGACTCCTACACACAACCGACAGTCACCGCAAACCACAGCagcacagagtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtacaCGCTCATCTGGACAGTCACCGTCAACAACAACCAACCACAGCAGCACagtgaatgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctcatctGGACAGTTACACAAACATCATGATGTCTGGAACAATCACTTACTTCACTCTTAT

Function

NR:

description
PREDICTED: pleckstrin homology domain-containing family A member 5-like isoform X17

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU36856 True 2012 lncRNA 0.41 2 649509 651593

Neighbor

gene id symbol gene type direction distance location
zdhhc17 zdhhc17,LOC107708015,LOC107658960,LOC107656450 coding upstream 288587 343592 ~ 360922 (+)
LOC122343357 LOC107658963,LOC107708011,LOC107555883 coding upstream 436350 205505 ~ 213159 (+)
glipr1a NA coding upstream 449973 195092 ~ 199536 (+)
frs2a frs2,frs2a,LOC107658966,LOC107590545,LOC107729158 coding upstream 542204 90208 ~ 107305 (+)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 coding upstream 560357 87004 ~ 89152 (+)
LOC122342832 NA coding downstream 209003 860596 ~ 863551 (+)
LOC122342829 LOC107705336,LOC107583937,LOC107656238 coding downstream 215603 867196 ~ 888759 (+)
fgd4b LOC107658950,LOC107705337,LOC107656390,LOC107590534,LOC107584024 coding downstream 239104 890697 ~ 908324 (+)
nampt1 nampt,nampta,LOC107658946,LOC107705339,LOC107656408,LOC107718548,LOC102790888 coding downstream 265989 917582 ~ 931678 (+)
sypl1 sypl1,LOC107590538,LOC107658778,LOC107583939,LOC107656429,LOC107718552 coding downstream 282453 934046 ~ 937823 (+)
G24758 NA non-coding upstream 24284 623251 ~ 625225 (+)
G24754 NA non-coding upstream 29813 619477 ~ 619696 (+)
G24751 NA non-coding upstream 33653 615600 ~ 615856 (+)
G24746 NA non-coding upstream 41995 607287 ~ 607514 (+)
G24687 NA non-coding upstream 69159 580109 ~ 580350 (+)
G24811 NA non-coding downstream 213247 864840 ~ 933111 (+)
LOC122342413 NA non-coding downstream 461302 1112895 ~ 1127380 (+)
G24925 NA non-coding downstream 635019 1286612 ~ 1287073 (+)
G24968 LOC107583957,LOC107656385,LOC107579307,LOC107711491 non-coding downstream 904799 1556392 ~ 1557778 (+)
G25071 NA non-coding downstream 1037385 1688978 ~ 1693389 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other upstream 210157 434343 ~ 439352 (+)
G24632 LOC107584022 other upstream 275427 373527 ~ 374082 (+)
G24609 NA other upstream 354440 293235 ~ 295069 (+)
cmah cmah,LOC107555874,LOC107729160,LOC107656456,LOC107590555 other upstream 455326 184716 ~ 194183 (+)
G24555 cpsf6 other upstream 564547 83688 ~ 84962 (+)
G24771 plekha5,LOC107584023,LOC107658747 other downstream 2499 654092 ~ 665530 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other downstream 593985 1245578 ~ 1249169 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other downstream 636704 1288297 ~ 1291224 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other downstream 677859 1329452 ~ 1331843 (+)
LOC122343488 NA other downstream 1018919 1670512 ~ 1672959 (+)

Expression


Co-expression Network