LOC122342481 (LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915)


Basic Information

Item Value
gene id LOC122342481
gene name LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1245578 ~ 1249169 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU37037
TCCgactttatttgaatgtatcTATCGTATGAGGTCACATGATGTAGTTTCTAAATGGTTTAGTAATAATTCGCCTTACTGGCCCAAAAAGATTTGACAGAAAAGCCCAGGATGTGAACACGCGGACAGACTCGCACGCTCTCAGAGGCATAAACGTAAGAAAACCCACAACTTGCTGCTCCTCAGGGGGGTTTTGTACCAGCGTCACGCCCTCAGAGAAACGTTTCCTCCGAGAAACGAGGGTAGCTGCGTTAGCAGCCTTAATGTGCTTTAAACCTAATGTGTTCAAGACGAACCTCGCGGACTTCACGAATTACTAACGCAAATAACACCGCTGGGCTTTGATGGTTATCGAGTATTGGCCGTCTGGGTGATGGTTTTACTGCATGATGGGGTTTATGAGGACGGTCTCCCCTCGTAACTGCATGCGtcgggatttttttttttgcatgtggaGACCGCGGCATTGGTCCTGATAATGAGCCGCTCTGCTCGGACCGTAGCGAACCGATTGTGAGATAAACTGTGACTCTTCCTTTAGCTTTGAACGGGACGAGAGCAACCGAGTGCCTTCATTAACACTTCCAGGCAGCTGGACTTCTGTAACTCTTTTGAAATATTGCATCCGCACCGAAACGGGTTCAGGCGTGTCTCGGTTCATCTGCGATTAAAAACCAGGCCTCGGGGTGCGGAGTTAAAGAAAACCGATTTCACTCACGGCAGCTAAAGCCGAGCATCTCTCAGAGTATTGAGGCTTTCTCGATGGTCCAACTTTATTAAACACGTGAGCACCGCGCACTGTGAATGACTACCGTGACCTCTCACAAAAGAGCGGTTATTCCTCGTCTTCGAGACAAATTAGTCACGATTTGTTTGAGAGAAACTGCCAAAGCTTAGAATAATGAATTCTTAAAGGGCAGCTCACACAGAAATGAAATTGCGTTGAAATGTACTCATATcgttgtttgttttcagtttagcattcactgcactgGAGGGCGAGAGGTGTGACGCACgttttaagcacattttcatttctgcgTGAGCTGTTCTATACATCAGCCTCaaaacttttagaaaaaaattaaaaatccagATTTTGTCCTGCAGAGAAGAACAGACAGCTTTCTATAATACATAAAGGTGACTTTATATGAACTCTTTTTTCTTCATGCATGTGGTTACGTGTTGAAGTAAATACTCTCGGCAGCTGCTCAGATGTACTGTTTTGTCCCTCCGACTTCGAGgaagaacattttatataattgaagGAATGGGTCGGGGatgattattatcattttcCTGTGTTTGTGTAATTAGCCTCAGAGTTAGATCATTTCATGGATGTTAGTGCGAGTCTAGAATAATAGAAATCATTCGATGCACTTCTTTAACTTATTGCATTTGGAACGTGTAGCACATCTTTGTCTCTGTTCAATCTATGCACTAATTACACTGATCAAATTAAAGATCTCGAACGTgaagttttgtgtattttggggTGTATTTCCGTGTTGCCGTGGTGACTGTGCTCTTCATGCTCCGGTCAGGGCAGGAGAGATTTGGCTGTTACTGAAGGGACCTGCATATTTTCCATATCTGACGTCAAGAAACAAAACAGCCACGGTCTGGTTT
>XM_043236306.1
GTGTATGATGAGTTCGGATGAATAGTGCAGCGCCGCCTGGTGGTGGGTTTAATATGACTCGTCCTTTCTTCCCTGCGCGTCTCGTTCCTTCCAATGACCGTGCAAGAAGAAATGCGGCTAGTGAGGTTTCGGGCTTCGCGGGGGCGCAGCGTGTCACCGGCGAGCCGCGGCGTAAAATGACCGTCAGACAAAGACGCGGCGACATCTGAGCGCGTTCGAGGACAGACGCGGCGACGATGAAGACGACGAGGCGAGCGCAGCCCGCTTTACCGCAGTGGATGCGCATGTATTTCTACGGGATGCACGGAGTCACGCTGGACGTCCTGCAGTCCTCCGCGCGCCGGTTCCTGGGTGACCGCGACTTCAGACTGCTGGGCTTCTCCTCTCCGTATCTGTGCGTCGTGCACTCCATTGCGCATCTGGTTCTGGAGAAGATCTACCTGCAAAAAAGATGCTTCCGAGAGCGACCCGTCGTCTTTCACCTCGTTTTCTACCCTTCCTTGTACATCTGCCTGCAGATCTTAATAGAGAGCGTGGTGACCTGCACCGAGAACATCAGAGCGGTTTCCGTCACGCAGCTCCTTGTGCATTACATCCTGGCTTTGTACTTCACGAATGTCTTTCATAAGGGCTTCCTGAGTCTGCAGTACCAGGAAAAGCGGGTGTTATTGAGGTCGTCCCGCCCGAACGGGTTACCCGGCGTCCTGCGCTTCGCGTTCTTTGGGATGCACGGCTTTCTGGACGAGGTGCTCTTCACTTCTGTGTTTAACTTGTTCGAGAAAGCGGACGGGTTCTTGAGGGGCCACACGTCCCTGTGGTCCTTCCTCATGTATGGGAGCTGCAGCTTCGTGGTGGAGAAGCTCTACCTCCACCTGCACTTCAGGAGAGGATGGGGAACCTTGCAGCGGCTCCCCATCTACATCTGCTTCATCTACACGTGGGAGTTCAGCTGGGGCTTCGCTCTGAGGCGGTATGACGCCTGTTCCTGGGACTATTCCCACTATCCTCTCAATTTTATGGGGCTGGTGACGTTGCTGTATCTTCCAGGATGGGTCTGCCTGAGTCTGTATCAAGACGTCTTGTCGAATGTTCTTCTGAGGGTTGTGTGCAATGACAGGAATGATGAGGAGATGCCGAACGCTGGCTCCAATGGACGCCTGCTGCCCAAAGGGAAGCTGGAGAAAGACTAAATGCATGTGGGCACGTTTTCCTAATATGTCCTCCTGGGACCAGCGGAAAGGCTCTTGAACGAGGAGGTCAGGGCTAGTTGTCACTCCAGGTTTAATTGAAGTCGTCTTCCGTGTCGAGATGCTCCTAGAATgtagtggaaaaaaatatataggtaaTTTtttggggcaagttgtcacaacGAGAACCCgattttttgctatatttaaatactaaaataattgtgAAGCACAAAATAGCATGAAACATAGCCAGTAGCATTATAGATTATAGTATTCAGATAAAGCATATTAGCAATTTTATAGTAGATAATAACACTACAATATTAGCGATATTcgtattgaataaatatatatatgacattttataatttttatattgatttaatttataaacgtttgtaattacacattcaaatgataaataataatactaataatatataattatatcatttaatttatgattGACCACATTAGGAGAGCTTGccctggtaaaaaaaaaaatatatatataaaaaatatatagtatcaACTTTTGCTTgagaacagcattttaaaaaaatatattaaaacaaacagctgGACTACatgtgtgacaactagcccgtCTCCTCCgactttatttgaatgtatcTATCGTATGAGGTCACATGATGTAGTTTCTAAATGGTTTAGTAATAATTCGCCTTACTGGCCCAAAAAGATTTGACAGAAAAGCCCAGGATGTGAACACGCGGACAGACTCGCACGCTCTCAGAGGCATAAACGTAAGAAAACCCACAACTTGCTGCTCCTCAGGGGGGTTTTGTACCAGCGTCACGCCCTCAGAGAAACGTTTCCTCCGAGAAACGAGGGTAGCTGCGTTAGCAGCCTTAATGTGCTTTAAACCTAATGTGTTCAAGACGAACCTCGCGGACTTCACGAATTACTAACGCAAATAACACCGCTGGGCTTTGATGGTTATCGAGTATTGGCCGTCTGGGTGATGGTTTTACTGCATGATGGGGTTTATGAGGACGGTCTCCCCTCGTAACTGCATGCGtcgggatttttttttttgcatgtggaGACCGCGGCATTGGTCCTGATAATGAGCCGCTCTGCTCGGACCGTAGCGAACCGATTGTGAGATAAACTGTGACTCTTCCTTTAGCTTTGAACGGGACGAGAGCAACCGAGTGCCTTCATTAACACTTCCAGGCAGCTGGACTTCTGTAACTCTTTTGAAATATTGCATCCGCACCGAAACGGGTTCAGGCGTGTCTCGGTTCATCTGCGATTAAAAACCAGGCCTCGGGGTGCGGAGTTAAAGAAAACCGATTTCACTCACGGCAGCTAAAGCCGAGCATCTCTCAGAGTATTGAGGCTTTCTCGATGGTCCAACTTTATTAAACACGTGAGCACCGCGCACTGTGAATGACTACCGTGACCTCTCACAAAAGAGCGGTTATTCCTCGTCTTCGAGACAAATTAGTCACGATTTGTTTGAGAGAAACTGCCAAAGCTTAGAATAATGAATTCTT

Function

NR:

description
PREDICTED: transmembrane protein 229A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37037 False 1635 lncRNA 0.44 2 1247380 1249169
XM_043236306.1 True 2713 mRNA 0.47 1 1245578 1248290

Neighbor

gene id symbol gene type direction distance location
grm8a grm8a,LOC107584025,LOC107658943,LOC107711511,LOC107656388,LOC107725917 coding upstream 134059 970135 ~ 1111519 (+)
znf800b LOC107658945,LOC107583943,LOC107711512,LOC107590539,LOC107656405,LOC107736565,LOC107705332 coding upstream 276219 958334 ~ 969359 (+)
atxn7l1 LOC107658944,LOC107705340,LOC107583941,LOC107656393,LOC107590536,LOC107718553 coding upstream 288228 939160 ~ 957350 (+)
sypl1 sypl1,LOC107590538,LOC107658778,LOC107583939,LOC107656429,LOC107718552 coding upstream 307755 934046 ~ 937823 (+)
nampt1 nampt,nampta,LOC107658946,LOC107705339,LOC107656408,LOC107718548,LOC102790888 coding upstream 313900 917582 ~ 931678 (+)
waslb wasl,LOC107725914,LOC107658745,LOC107583945,LOC107656407 coding downstream 8564 1257733 ~ 1272088 (+)
zgc:162331 zgc:162331,LOC107584055,LOC107658936,LOC107725957,LOC107711500,LOC107656412,LOC107579629 coding downstream 97016 1346185 ~ 1351673 (+)
c4h12orf56 LOC107583952,LOC107656394,LOC107726068,LOC107711499,LOC107658934,LOC107581038 coding downstream 103234 1352403 ~ 1366070 (+)
ssbp1 ssbp1,LOC107656434,LOC107658933,LOC107583954 coding downstream 117550 1366719 ~ 1368745 (+)
creb3l2 creb3l2,LOC107656406,LOC107579521,LOC107711498,LOC107583953,LOC107726033,LOC107658932 coding downstream 120223 1369392 ~ 1385823 (+)
LOC122342413 NA non-coding upstream 118198 1112895 ~ 1127380 (+)
G24811 NA non-coding upstream 312467 864840 ~ 933111 (+)
G24768 LOC107718544,LOC107658747,LOC107590532 non-coding upstream 593985 649509 ~ 651593 (+)
G24758 NA non-coding upstream 620353 623251 ~ 625225 (+)
G24754 NA non-coding upstream 625882 619477 ~ 619696 (+)
G24925 NA non-coding downstream 37443 1286612 ~ 1287073 (+)
G24968 LOC107583957,LOC107656385,LOC107579307,LOC107711491 non-coding downstream 307223 1556392 ~ 1557778 (+)
G25071 NA non-coding downstream 439809 1688978 ~ 1693389 (+)
G25030 NA non-coding downstream 539462 1788631 ~ 1789276 (+)
G25086 NA non-coding downstream 581509 1830678 ~ 1830968 (+)
G24771 plekha5,LOC107584023,LOC107658747 other upstream 580048 654092 ~ 665530 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other upstream 806226 434343 ~ 439352 (+)
G24632 LOC107584022 other upstream 871496 373527 ~ 374082 (+)
G24609 NA other upstream 950509 293235 ~ 295069 (+)
cmah cmah,LOC107555874,LOC107729160,LOC107656456,LOC107590555 other upstream 1051395 184716 ~ 194183 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other downstream 39128 1288297 ~ 1291224 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other downstream 80283 1329452 ~ 1331843 (+)
LOC122343488 NA other downstream 421343 1670512 ~ 1672959 (+)
LOC122342451 NA other downstream 535068 1784237 ~ 1788096 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other downstream 745071 1994240 ~ 1995536 (+)

Expression


Co-expression Network