LOC122343488


Basic Information

Item Value
gene id LOC122343488
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1670512 ~ 1672959 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU37269
GATGGGTTTCCTTCTCTGGGTGGTTGTCCCTTTATGGGAGGGAGCAGTGGGGATAATTAATGTCACAGTATTTAAATGTCTGGACAGGAAGCATTAGATCTCAACCTCAGACATACCTGCTCTTTCAGTCTGCTCTTTCAGTGTTACCGTAGTGGAGTTAAATGACGGTTGGTTAcatgtgtattgtgtgttttagccattatattaatgtttattcttgtttttatacTGGCAAGACGTGTTGAAGCCACTCCTGTTAGCGTCCTTGGTGATTCGCTTCAATCACCTGTTGGAAGTTTTAGCCTTCTAGAgttcttttgatcaatttgtggACTACTGCCAGTTAAACAAGAAGACTcgtaaaaatctttttatattaCCTCATATTGAAGAGTCTTTGGATACAGCTTCTGGGGTCTGCTGATTTTCTACTCTTGGCTTGCATCTTGAGCGATTAGGGGGGTGCAGGTCGATTGGAACAGAAAGGACTTAAAGTTCAAAAAATGTGCCTTTAGGAGGCTGGCTATTCAAGACATGTTATTTCCAGTGCTGGTGTCTCCATTGATCCAAAGAAGATTGAGGCAGTGGCCAAGTGGAAACATCTAAGCCATGTCTCTGAGCTGcgatcatttctgtttttttgccaGCTATTATCATTGCTTTGTAGAGGGTTTTTTTCTAAGCTGGCAGTACCCCTACAAAAGCTAGAGGCTGAGTTGGCTGGTACAAAGTCTCAAAGGGACTGGACTGGATGGGACTTTGGGGCAGCCTGGACAGAAATATGTGAATATAGCATTGAAAGACAGAAAGCCAAACTTACCTTTACTCCAGTCCTGGCTTGCTTATTTTGGAGGTAGATGCCAGCCAAAGTGGCTTACTGTCACAGGAACAAGAAGGTGGCTTCCGTCCACCAGAACTTAACATTGCAAACTAGAGTTTGATGAACTTGAGTTCTTGGATTTGGTATGGGCAGTCACTGAAAAGTTTTATGAGTACCTATTTGGGCACAAGTGTATAATTTACACTAGTAACAATCCTTTAAGCCACCTCGCCTTCATCGAGCAGAATTAATAGGAACGCTAATACTCTGTCTCAACAGTATTTACCAATTGCTACTTCCACCCCTGTTCCAAAACTTGCAGTAAGCTGTGGGATTACAGAACCAGCCTCATGTCAATCAAACTCCCATTTTTGTTTTACCCCATCACTCTACCCAATGTGTGTTCTTTGCAGCGAGCTGACCCCaattttcatgctgttttaacCCTTCTGAGGCAGAAAAGGGACCCTAGTTCCTCGACGAGGAAGCCTTATCTGCTTTATCCACCTCAAACTGAGGTAAGCCACCTGGCTGGGTGGTGCAGAGACAAAAATCTCATTCTGAACGTGGAGAAGACGAAGGAGATTGTTGTTGACTTCAGGGGAGTGAACAACCAGCATGCTACCCTGACCATCAATGGTGCAGCTATGGAGAGAGTGAGCAGCACTAAACCTCTCCTGGACTAACAACAGAAATGATGACTGAGGTGAAGCACTGGTGTCAGGAGTGTGAAAGGTGGCAAGTGGCTAAGGACACTATTCTTGCATTCCCTAGTTTTATGGGGCATCTGTTAGCTTCACGGCCCAACAAGATTTTAAGAAAGGAAGCATTAGATATTAGCCTCTCTTCTGGTCATACCCTCTCTTCCGGTCTTCCACTACCTACTGTAGTGGAGCTAAAACTGTAAACGTTCCTGTAAACGTTCTTGGTGAAATGCGTCAAGCAATCGTTGGATGTTTCAGGTATGTAGTCACTCCTACTAccgttttgtaataaaatttgttATTTGTTGAAGTGTATGACATTACactattaaatacataattccTTGTATTTATCCTGCTTGAAAAAAGTTATAGTTTAGCAGCGAGCATGTCtccattttctcattttaccATTCGAAACTATGGTCCTTGAGTATTTCCGTTTGTGCAATTCCCATGGTGGCATTATTAAAGCTTAAAGTTATCAAAAGATATTGCTCTGGTCACATTTGCTTATTTTCTCTGGAAAAACATGAAAGTGGATGACC
>XR_006250791.1
CTCAGACATACCTGCTCTTTCAGTCTGCTCTTTCAGTGTTACCGTAGTGGAGTTAAATGACGGTTGGTTAcatgtgtattgtgtgttttagccattatattaatgtttattcttgtttttatacTGGCAAGACGTGTTGAAGCCACTCCTGTTAGCGTCCTTGGTGATTCGCTTCAATCACCTGTTGGAAGTTTTAGCCTTCTAGAgttcttttgatcaatttgtggACTACTGCCAGTTAAACAAGAAGACTcgtaaaaatctttttatattaCCTCATATTGAAGAGTCTTTGGATACAGCTTCTGGGGTCTGCTGATTTTCTACTCTTGGCTTGGCAAGTGACTACAATCAAGTTTCTGAAAAGGATAGAGCCAAGAGTGCTTTTTGTACtccttttgaattatttgaGTTTAACTGTATGCCGTTTGGCCTCTGCAATGCACCAAATATCTTCCAAAAAACCTTTGGAAAACCACACTGTCAGTTACTTTCTTTATCTTGatgatgttgtgtttttttcttctaccaTTTCACAGCATCTTGAGCGATTAGGGGGGTGCAGGTCGATTGGAACAGAAAGGACTTAAAGTTCAAAAAATGTGCCTTTAGGAGGCTGGCTATTCAAGACATGTTATTTCCAGTGCTGGTGTCTCCATTGATCCAAAGAAGATTGAGGCAGTGGCCAAGTGGAAACATCTAAGCCATGTCTCTGAGCTGcgatcatttctgtttttttgccaGCTATTATCATTGCTTTGTAGAGGGTTTTTTTCTAAGCTGGCAGTACCCCTACAAAAGCTAGAGGCTGAGTTGGCTGGTACAAAGTCTCAAAGGGACTGGACTGGATGGGACTTTGGGGCAGCCTGGACAGAAATATGTGAATATAGCATTGAAAGACAGAAAGCCAAACTTACCTTTACTCCAGTCCTGGCTTGCTTATTTTGGAGGTAGATGCCAGCCAAAGTGGCTTACTGTCACAGGAACAAGAAGGTGGCTTCCGTCCACCAGAACTTAACATTGCAAACTAGAGTTTGATGAACTTGAGTTCTTGGATTTGGTATGGGCAGTCACTGAAAAGTTTTATGAGTACCTATTTGGGCACAAGTGTATAATTTACACTAGTAACAATCCTTTAAGCCACCTCGCCTTCATCGAGCAGAATTAATAGGAACGCTAATACTCTGTCTCAACAGTATTTACCAATTGCTACTTCCACCCCTGTTCCAAAACTTGCAGTAAGCTGTGGGATTACAGAACCAGCCTCATGTCAATCAAACTCCCATTTTTGTTTTACCCCATCACTCTACCCAATGTGTGTTCTTTGCAGCGAGCTGACCCCaattttcatgctgttttaacCCTTCTGAGGCAGAAAAGGGACCCTAGTTCCTCGACGAGGAAGCCTTATCTGCTTTATCCACCTCAAACTGAGGTAAGCCACCTGGCTGGGTGGTGCAGAGACAAAAATCTCATTCTGAACGTGGAGAAGACGAAGGAGATTGTTGTTGACTTCAGGGGAGTGAACAACCAGCATGCTACCCTGACCATCAATGGTGCAGCTATGGAGAGAGTGAGCAGCACTAAACCTCTCCTGGACTAACAACAGAAATGATGACTGAGGTGAAGCACTGGTGTCAGGAGTGTGAAAGGTGGCAAGTGGCTAAGGACACTATTCTTGCATTCCCTAGTTTTATGGGGCATCTGTTAGCTTCACGGCCCAACAAGATTTTAAGAAAGGAAGCATTAGATATTAGCCTCTCTTCTGGTCATACCCTCTCTTCCGGTCTTCCACTACCTACTGTAGTGGAGCTAAAACTGTAAACGTTCCTGTAAACGTTCTTGGTGAAATGCGTCAAGCAATCGTTGGATGTTTCAGGTATGTAGTCACTCCTACTAccgttttgtaataaaatttgttATTTGTTGAAGTGTATGACATTACactattaaatacataattccTTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37269 True 2072 TUCP 0.42 3 1670512 1672959
XR_006250791.1 False 1970 lncRNA 0.42 2 1670617 1672760

Neighbor

gene id symbol gene type direction distance location
ada2b cecr1b,LOC107583967,LOC107656410,LOC107711479,LOC107658918,LOC107725927,LOC107581132 coding upstream 4367 1661550 ~ 1666145 (+)
atp6v1e1b atp6v1e1b,LOC107658907,LOC107583987,LOC107711482,LOC107579815,LOC107725938,LOC108442797 coding upstream 9113 1658354 ~ 1661399 (+)
snap91b si:ch211-214j24.9,LOC107583964,LOC107725923,LOC107658883,LOC107711483,LOC107656397,LOC107579412,LOC108443062 coding upstream 16753 1635177 ~ 1653759 (+)
si:ch211-214j24.15 LOC107658740,LOC107725906,LOC107584035 coding upstream 35905 1629593 ~ 1634607 (+)
LOC122342485 osgep,LOC107656414,LOC107583976,LOC107579596,LOC107658895 coding upstream 45621 1622079 ~ 1624891 (+)
ccnd2b ccnd2b,LOC107725932,LOC107658897,LOC107583977,LOC107656417,LOC107710106,LOC107579638 coding downstream 44562 1717521 ~ 1726321 (+)
tmem209 tmem209,LOC107725925,LOC107658886,LOC107583965,LOC107656402,LOC107579462 coding downstream 53824 1726783 ~ 1731685 (+)
ahcyl2b ahcyl2,LOC107725924,LOC107710138,LOC107583963,LOC107658882,LOC107656398,LOC107579442 coding downstream 59196 1732155 ~ 1760369 (+)
strip2 strip2,LOC107725919,LOC107656389,LOC107658739 coding downstream 89184 1762143 ~ 1783683 (+)
si:dkey-14d8.21 LOC107725922,LOC107583962 coding downstream 119348 1792307 ~ 1797892 (+)
G24968 LOC107583957,LOC107656385,LOC107579307,LOC107711491 non-coding upstream 112734 1556392 ~ 1557778 (+)
G24925 NA non-coding upstream 383439 1286612 ~ 1287073 (+)
LOC122342413 NA non-coding upstream 543132 1112895 ~ 1127380 (+)
G24811 NA non-coding upstream 737401 864840 ~ 933111 (+)
G24768 LOC107718544,LOC107658747,LOC107590532 non-coding upstream 1018919 649509 ~ 651593 (+)
G25071 NA non-coding downstream 16019 1688978 ~ 1693389 (+)
G25030 NA non-coding downstream 115672 1788631 ~ 1789276 (+)
G25086 NA non-coding downstream 157719 1830678 ~ 1830968 (+)
LOC122342405 NA non-coding downstream 226937 1899896 ~ 1901886 (+)
G25192 NA non-coding downstream 232871 1905830 ~ 1906106 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 338669 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 379288 1288297 ~ 1291224 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other upstream 421343 1245578 ~ 1249169 (+)
G24771 plekha5,LOC107584023,LOC107658747 other upstream 1004982 654092 ~ 665530 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other upstream 1231160 434343 ~ 439352 (+)
LOC122342451 NA other downstream 111278 1784237 ~ 1788096 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other downstream 321281 1994240 ~ 1995536 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 1426778 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1446556 3119515 ~ 3306758 (+)
G25514 NA other downstream 1808670 3481629 ~ 3502094 (+)

Expression


Co-expression Network