ccdc167 (ccdc167)


Basic Information

Item Value
gene id ccdc167
gene name ccdc167
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1653591 ~ 1654826 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU37319
ATTTGTGTACGGAAGTATCTGCTATTCCCATGATTTCTCTTCAGTAAAAGCTCTAAGGCCCTCCGAAATGGGTACACCAAAAACcttaaagaaagagaaaataagtgTTGCAAGCGAGATTGACCGCGTTGAAGAGCgaaaattacactgtaaaaacagcCTGGAGAGGGCAGAATTCAGACAGAGAAAAGAGCAGCTCTCAGACAACGACAGGCTGGCCCTGGACGATGAGATGACTGTATTGAATGAAAGAATACAGAAATATGAAAAGGAGCTGCAGGTGCTGAGAGGAGAGAACAGGAAGAATATGATGCTTTCGGTCGCTCTGTTAGCTATCAGCGCTCTTTTCTactacacatttatatattaagagGTATTTTTCTCTAAAGCCAGACAATGTCAGAGAATGAGATTTGGGGAGTCTGATATCCATTCATACCCATCAGTGTGCAACACTAGTTTGTTCAGGGGTTGTGAGTTTGGTCTAATCTTCATCTTGGCCTCAATGTCTTGGATTGTTGCAACTCTATAGTTTGCTTGACATGTGACAAAGAGACATTAGATTCTTGTGCATaagagagacacagaaaaatgggattatgcatgtttatatgaTCCTCATTGTGGAACACTTCACCCAATAATGACTAAATGTTTCTCTCCAGATCACTGTTTATTGCATTTCAACAGGACTAACATGCACAAAGGTGGGAGGGGCAGAGGGTGTTATtccatccaaaaataaaatttatcaacaaaatgttcagttgaaataaaaaaacagccatcaataaaatgcaatactgTCCCATGAAACTGCCGG
>XM_043236318.1
CGCAGAAGAATAAGTGAATATTTGTGTACGGAAGTATCTGCTATTCCCATGATTTCTCTTCAGTAAAAGCTCTAAGGCCCTCCGAAATGGGTACACCAAAAACcttaaagaaagagaaaataagtgTTGCAAGCGAGATTGACCGCGTTGAAGAGCgaaaattacactgtaaaaacagcCTGGAGAGGGCAGAATTCAGACAGAGAAAAGAGCAGCTCTCAGACAACGACAGGCTGGCCCTGGACGATGAGATGACTGTATTGAATGAAAGAATACAGAAATATGAAAAGGAGCTGCAGGTGCTGAGAGGAGAGAACAGGAAGAATATGATGCTTTCGGTCGCTCTGTTAGCTATCAGCGCTCTTTTCTactacacatttatatattaagagGTATTTTTCTCTAAAGCCAGACAATGTCAGAGAATGAGATTTGGGGAGTCTGATATCCATTCATACCCATCAGTGTGCAACACTAGTTTGTTCAGGGGTTGTGAGTTTGGTCTAATCTTCATCTTGGCCTCAATGTCTTGGATTGTTGCAACTCTATAGTTTGCTTGACATGTGACAAAGAGACATTAGATTCTTGTGCATaagagagacacagaaaaatgggattatgcatgtttatatgaTCCTCATTGTGGAACACTTCACCCAATAATGACTAAATGTTTCTCTCCAGATCACTGTTTATTGCATTTCAACAGGACTAACATGCACAAAGGTGGGAGGGGCAGAGGGTGTTATtccatccaaaaataaaatttatcaacaaaatgttcagttgaaataaaaaaacagccatcaataaaatgcaatactgTCCCATGAAA

Function

symbol description
ccdc167 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CCDC167 (coiled-coil domain containing 167).

NR:

description
coiled-coil domain-containing protein 167

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37319 False 823 TUCP 0.40 4 1653591 1654807
XM_043236318.1 True 835 mRNA 0.40 4 1653598 1654826

Neighbor

gene id symbol gene type direction distance location
si:ch211-214j24.10 si:ch211-214j24.10,LOC107725935,LOC107711484,LOC107583983,LOC107656420,LOC107579683,LOC107658903 coding downstream 24936 1625295 ~ 1628655 (-)
apex1 apex1,LOC107658891,LOC107725930,LOC107583973,LOC107656416 coding downstream 31710 1618977 ~ 1621881 (-)
LOC122342781 selenoo,LOC107579553,LOC107711487,LOC107725908,LOC105900684 coding downstream 49878 1601675 ~ 1603713 (-)
LOC122342889 NA coding downstream 60222 1591389 ~ 1593369 (-)
LOC122342888 LOC107584032,LOC107579834,LOC107656234,LOC107711464,LOC107725908 coding downstream 62286 1588279 ~ 1591305 (-)
si:ch211-214j24.14 LOC107658910,LOC107579438,LOC107725940 coding upstream 210 1655036 ~ 1658265 (-)
LOC122343486 LOC107583996,LOC107725944,LOC107658917,LOC107579452,LOC107656399,LOC107579492 coding upstream 11819 1666645 ~ 1670146 (-)
LOC122343487 LOC107583996,LOC107658917,LOC107725944,LOC107656399,LOC107579452,LOC107579492 coding upstream 20376 1675202 ~ 1678612 (-)
rad51ap1 LOC107658893,LOC107579575 coding upstream 26123 1680949 ~ 1683573 (-)
fgf23 fgf23,LOC107658906,LOC107583986,LOC107656424,LOC107725936,LOC107710109,LOC107579742 coding upstream 30303 1685129 ~ 1687279 (-)
G25098 NA non-coding downstream 75866 1577201 ~ 1577725 (-)
G25028 NA non-coding downstream 76875 1576061 ~ 1576716 (-)
G25027 NA non-coding downstream 78172 1570293 ~ 1575419 (-)
G25019 tbc1d30,LOC107725910 non-coding downstream 172698 1478609 ~ 1480893 (-)
G25001 LOC107726026,LOC107658929,LOC107656386 non-coding downstream 233329 1418186 ~ 1420262 (-)
G25124 NA non-coding upstream 5779 1660605 ~ 1661388 (-)
G25125 LOC107583967,LOC107658918,LOC107725927,LOC107656410,LOC107711479 non-coding upstream 7519 1662345 ~ 1662607 (-)
G25126 cecr1b,LOC107656410,LOC107711479,LOC107583967,LOC107725927,LOC107581132 non-coding upstream 8247 1663073 ~ 1663900 (-)
G25127 NA non-coding upstream 11012 1665838 ~ 1666137 (-)
G25133 NA non-coding upstream 33532 1688358 ~ 1688894 (-)
zgc:113263 LOC107658878,LOC107583959,LOC107725918,LOC107656382,LOC107711463 other downstream 35293 1609360 ~ 1618298 (-)
selenoo2 selenoo,si:dkey-14d8.2,LOC107579362,LOC107711485 other downstream 48901 1594284 ~ 1604690 (-)
LOC122342802 LOC107711465,LOC107656235 other downstream 67402 1580480 ~ 1586189 (-)
ptprz1b ptprz1,ptprz1b,LOC107725913,LOC107656236,LOC107658935,LOC107581028 other downstream 330194 1289314 ~ 1323397 (-)
G24875 NA other downstream 583495 1069160 ~ 1070096 (-)
rsph9 rsph9,LOC107658900,LOC107583979,LOC107579672,LOC107710090,LOC107656226 other upstream 243577 1898403 ~ 1902663 (-)
cald1a cald1a,LOC107583995,LOC107725991,LOC107658884,LOC107656362,LOC107710121 other upstream 388127 2042953 ~ 2088579 (-)
tnni4a zgc:101560,LOC107725970,LOC107584059,LOC107658770,LOC107656258,LOC107581287 other upstream 436525 2091351 ~ 2097801 (-)
dock4b dock4b,LOC107656358,LOC108425388 other upstream 644809 2299635 ~ 2375716 (-)
LOC122342907 NA other upstream 817458 2472284 ~ 2473068 (-)

Expression


Co-expression Network