rsph9 (rsph9,LOC107658900,LOC107583979,LOC107579672,LOC107710090,LOC107656226)


Basic Information

Item Value
gene id rsph9
gene name rsph9,LOC107658900,LOC107583979,LOC107579672,LOC107710090,LOC107656226
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1898403 ~ 1902663 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU37444
ttttataaataaaaacgtgtttGTAAACGGTGTCGGACAATGGACTTTGAGTCTTTGCATTACTCGCTGGATTTAGCCGCGGCTAATGGTTTGACTCTGAGCAGCGAGCAGAGAGCCGCTCTTCAGACCTCGCTCGTCATTCTCAAGAGAAACTACAAATTCAGCCGGGTTTTGTTTTGGGGAAAGATTTTGGGGCTAAAATGCGACTACTTTATTGCGCAAGGAGTTGAAGAGGACGAAATGAAGAACAGAAAGACTTTGTACAGCTTGAACTGCATGGATTGGCACCTGCTCCCCCCAGCCACCGAGTCCATGATTGCAGATGTGGCACTAGCAGCACAGGGGAGATTCACAGGCGACCCGTCCCATGAGTACGAGCACACAGAGATGCGCATTAAGGGAGAGGGGGACGACGCCGCAGAGGAAGAGGTCACGGTGA
>XM_043236174.1
TTTACCTTAGCAACTGTAGAGTAGCCGAAGAGTGAGACTGATTAGCTCGCTAGCGTCAGTTCTGTAATAAGCGCAATAGATACAAACGAAgtattcttttataaataaaaacgtgtttGTAAACGGTGTCGGACAATGGACTTTGAGTCTTTGCATTACTCGCTGGATTTAGCCGCGGCTAATGGTTTGACTCTGAGCAGCGAGCAGAGAGCCGCTCTTCAGACCTCGCTCGTCATTCTCAAGAGAAACTACAAATTCAGCCGGGTTTTGTTTTGGGGAAAGATTTTGGGGCTAAAATGCGACTACTTTATTGCGCAAGGAGTTGAAGAGGACGAAATGAAGAACAGAAAGACTTTGTACAGCTTGAACTGCATGGATTGGCACCTGCTCCCCCCAGCCACCGAGTCCATGATTGCAGATGTGGCACTAGCAGCACAGGGGAGATTCACAGGCGACCCGTCCCATGAGTACGAGCACACAGAGATGCGCATTAAGGGAGAGGGGGACGACGCCGCAGAGGAAGAGGTCACGGTGAAAGTGAATGAGGCGAGTAGATTGGCAACAACTGTGTCAAACATCAGTAAAGATGCGTCTGTAGTGCCACGTGGTGCATTTACCAAGAGCCCCTGCGGCAAAGTGCAGGCAAACCGAAGCTTTGGAGGTCTAGATCCTGTTGAGGCTGCGAAACTGCACAGCTATCTGCACTTCCATGAACCGGTTAACCTGAAAAAGAAGTCCATCTTGGAAATGTCTCACCTGAACCCTGCTATTGACTTTCTAGATCCTTTGAGCGAGGATGTTCCCAAAGGGTCATGGTGCCTCCAGCTTGAGCGGGGCggcactgtgtgtgttttacgcAGTTTGCTCTGGCTGGGTCTCACCTTCTTCCATGTTCCCCAGACCCCGCAGCATGGGCACATCTACATGGGAGACGGACTTATGAACCTTGACCTGCCCTTCATGTTATAGCAGCCAAAAGGACTTTAAAAGACAGCAAATGCTTTAATCTTACTCAAAGTTAATGTCCAATCAACTCTGTGATTTACTT

Function

symbol description
rsph9 Acts upstream of or within axoneme assembly and cilium movement. Located in axoneme and kinocilium. Is expressed in forerunner cell group; nervous system; pronephric duct; and spinal cord neural rod. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 12. Orthologous to human RSPH9 (radial spoke head component 9).

NR:

description
radial spoke head protein 9 homolog

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0035082 axoneme assembly biological_process
GO:0031514 motile cilium cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005930 axoneme cellular_component

KEGG:

id description
K19757 RSPH9; radial spoke head protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
TU37444 False 439 TUCP 0.50 2 1901843 1902567
XM_043236174.1 True 1048 mRNA 0.48 5 1898403 1902663

Neighbor

gene id symbol gene type direction distance location
vegfab vegfab,LOC107658905,LOC107726022,LOC107710132,LOC107656377,LOC107579754 coding downstream 36209 1851243 ~ 1862194 (-)
tigarb tigarb,LOC107725934,LOC107710107,LOC107579711,LOC107583984,LOC107658904,LOC107656422 coding downstream 189606 1705449 ~ 1708797 (-)
fgf6b fgf6b,LOC107656433,LOC107583988,LOC107658909,LOC107725939,LOC107579852,LOC107710108 coding downstream 201012 1693551 ~ 1697391 (-)
fgf23 fgf23,LOC107658906,LOC107583986,LOC107656424,LOC107725936,LOC107710109,LOC107579742 coding downstream 211124 1685129 ~ 1687279 (-)
rad51ap1 LOC107658893,LOC107579575 coding downstream 214830 1680949 ~ 1683573 (-)
tmem63a tmem63a,LOC107726051,LOC107583960,LOC107658879,LOC107710129,LOC107656375 coding upstream 4831 1907494 ~ 1917150 (-)
faxca faxca,LOC107726027,LOC107710104,LOC107656374,LOC107579532,LOC104925628,LOC108279701 coding upstream 43866 1946529 ~ 1953516 (-)
ccnc ccnc,LOC107656373,LOC107583980,LOC107579661,LOC107726029 coding upstream 51391 1954054 ~ 1960043 (-)
pgm3 pgm3,LOC107579473,LOC107656266,LOC107658887 coding upstream 63189 1965852 ~ 1972410 (-)
foxm1 LOC107658881,LOC107710101,LOC107656265 coding upstream 76444 1979107 ~ 1985058 (-)
G25188 NA non-coding downstream 146 1896886 ~ 1898257 (-)
G25185 NA non-coding downstream 53003 1845129 ~ 1845400 (-)
G25182 NA non-coding downstream 66884 1831171 ~ 1831519 (-)
LOC122342506 NA non-coding downstream 68815 1825186 ~ 1829588 (-)
G25173 NA non-coding downstream 90061 1808019 ~ 1808342 (-)
G25190 NA non-coding upstream 522 1903185 ~ 1903461 (-)
G25240 NA non-coding upstream 89329 1991992 ~ 1993756 (-)
G25277 NA non-coding upstream 129578 2032241 ~ 2032656 (-)
LOC122343450 NA non-coding upstream 204101 2106764 ~ 2118325 (-)
G25298 LOC107549254,LOC107563058 non-coding upstream 259867 2162530 ~ 2163319 (-)
ccdc167 ccdc167 other downstream 243577 1653591 ~ 1654826 (-)
zgc:113263 LOC107658878,LOC107583959,LOC107725918,LOC107656382,LOC107711463 other downstream 280105 1609360 ~ 1618298 (-)
selenoo2 selenoo,si:dkey-14d8.2,LOC107579362,LOC107711485 other downstream 293713 1594284 ~ 1604690 (-)
LOC122342802 LOC107711465,LOC107656235 other downstream 312214 1580480 ~ 1586189 (-)
ptprz1b ptprz1,ptprz1b,LOC107725913,LOC107656236,LOC107658935,LOC107581028 other downstream 575006 1289314 ~ 1323397 (-)
cald1a cald1a,LOC107583995,LOC107725991,LOC107658884,LOC107656362,LOC107710121 other upstream 140290 2042953 ~ 2088579 (-)
tnni4a zgc:101560,LOC107725970,LOC107584059,LOC107658770,LOC107656258,LOC107581287 other upstream 188688 2091351 ~ 2097801 (-)
dock4b dock4b,LOC107656358,LOC108425388 other upstream 396972 2299635 ~ 2375716 (-)
LOC122342907 NA other upstream 569621 2472284 ~ 2473068 (-)
ccdc3a ccdc3,ccdc3a,LOC107725961,LOC107658768,LOC107580337,LOC107744050 other upstream 1097219 2999882 ~ 3012214 (-)

Expression


Co-expression Network