lyrm5a (LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994)


Basic Information

Item Value
gene id lyrm5a
gene name LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1994240 ~ 1995536 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU37517
TCCATCCCATGTCGTTTCCTCCGCACGTCCTGATAAACGCCTCTGTTATGGTCTTGTAGgtttattCTCTGCATCAGgataaaaaagagagacattAAAATGAGTAATCCACTGAGAGGTGAAGTTATAAGATTGTACAAAAATctTCTGTATCTTGGGCGGGAATATCCAAAAGGCACTACATACTTTAGGGAACGTCTGAAAGCAGCTTTCATGAAAAACAAAGATGTTACAGATCCCGAGAAGATCCAAAAGCTGGTTGACCGTGGAGAGTTTGTGATCAAAGAACTCGAGGCGCTTTACTTCCTCAGGAAATACAGAGCAATGAAGAAACGCTACTATGAACCAGAGCATTAATCAATGTTTCCATCACATGTGCCAGACTGTACAGTATACACGCCAgtgtttaaatcattttctgtaCATTTCTGAATGTTTGTGTCTGATGTGTTGCACTATAACAGATTTGgacttaaacatttatttttattacttctaAGTCCTTGTTAGATTTCCAATATACAGTTATTTGTAATGACaagtacatatgtatgtatatataaaaacattttagttttatttgaagtgATGTTCTAAGCAGGTATTTGTGTAGACAGCTCCACATCACAGAAAGCAAAGTTGGTTTTTCCAAAGGATTTGTCCAGCTCCTGCACCAGGTCAAACGTTCCTGCACTACCGGATACcttttagtgtattttaaaataattgaaaaaagtgATGGGAATAGCGTGAGTATAtttgtacatgtatatttgtatatatgccTGCATTAAAGATT
>XM_043236224.1
CGTAAAGACGCAACCTGGCTTTTATTTTGAGAGGCCATCTCGCTTTATGACCTTTATTTTGGAAAGCGTCCATCCCATGTCGTTTCCTCCGCACGTCCTGATAAACGCCTCTGTTATGGTCTTGTAGgtttattCTCTGCATCAGgataaaaaagagagacattAAAATGAGTAATCCACTGAGAGGTGAAGTTATAAGATTGTACAAAAATctTCTGTATCTTGGGCGGGAATATCCAAAAGGCACTACATACTTTAGGGAACGTCTGAAAGCAGCTTTCATGAAAAACAAAGATGTTACAGATCCCGAGAAGATCCAAAAGCTGGTTGACCGTGGAGAGTTTGTGATCAAAGAACTCGAGGCGCTTTACTTCCTCAGGAAATACAGAGCAATGAAGAAACGCTACTATGAACCAGAGCATTAATCAATGTTTCCATCACATGTGCCAGACTGTACAGTATACACGCCAgtgtttaaatcattttctgtaCATTTCTGAATGTTTGTGTCTGATGTGTTGCACTATAACAGATTTGgacttaaacatttatttttattacttctaAGTCCTTGTTAGATTTCCAATATACAGTTATTTGTAATGACaagtacatatgtatgtatatataaaaacattttagttttatttgaagtgATGTTCTAAGCAGGTATTTGTGTAGACAGCTCCACATCACAGAAAGCAAAGTTGGTTTTTCCAAAGGATTTGTCCAGCTCCTGCACCAGGTCAAACGTTCCTGCACTACCGGATACcttttagtgtattttaaaataattgaaaaaagtgATGGGAATAGCGTGAGTATAtttgtacatgtatatttgtatatatgccTGCATTAAAGATTATACTCACCTGTG

Function

NR:

description
PREDICTED: LYR motif-containing protein 5A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37517 False 799 lncRNA 0.36 3 1994308 1995523
XM_043236224.1 True 880 mRNA 0.37 3 1994240 1995536

Neighbor

gene id symbol gene type direction distance location
usp18 LOC107725967 coding upstream 652 1990505 ~ 1993588 (+)
pex26 LOC107658896,LOC107583978,LOC107725950 coding upstream 4303 1987476 ~ 1989937 (+)
rhno1 LOC107736423,LOC107658898,LOC107583982 coding upstream 7066 1985568 ~ 1987174 (+)
si:ch73-352p4.8 si:ch73-352p4.8,LOC107726064,LOC107710127,LOC107656372,LOC107583968,LOC107658734 coding upstream 14950 1973274 ~ 1979290 (+)
ngs LOC107583969,LOC107725974,LOC107658888,LOC107579501,LOC107656267,LOC107710103 coding upstream 28705 1960862 ~ 1965535 (+)
utp20 utp20,LOC107658916,LOC107710084,LOC107656365,LOC107725898 coding downstream 5553 2001089 ~ 2022310 (+)
LOC122343453 LOC107710120,LOC107658877,LOC107726057,LOC107580024,LOC107656361,LOC107584004,LOC100535105 coding downstream 182996 2178532 ~ 2189748 (+)
ifrd1 ifrd1,LOC107580056,LOC107726045,LOC107656357,LOC107658876,LOC107579159 coding downstream 393443 2388979 ~ 2394441 (+)
foxp2 foxp2 coding downstream 510410 2505946 ~ 2602501 (+)
mdfic mdfic,si:ch211-262n1.4,LOC107658868,LOC107656347,LOC107580133,LOC107584008 coding downstream 627003 2622539 ~ 2641837 (+)
G25193 NA non-coding upstream 85313 1907200 ~ 1908927 (+)
G25192 NA non-coding upstream 88134 1905830 ~ 1906106 (+)
LOC122342405 NA non-coding upstream 92354 1899896 ~ 1901886 (+)
G25086 NA non-coding upstream 163272 1830678 ~ 1830968 (+)
G25030 NA non-coding upstream 204964 1788631 ~ 1789276 (+)
LOC122342875 NA non-coding downstream 33260 2028796 ~ 2033049 (+)
G25249 NA non-coding downstream 53688 2049224 ~ 2050952 (+)
G25288 NA non-coding downstream 111227 2106763 ~ 2107094 (+)
G25300 NA non-coding downstream 172197 2167733 ~ 2167997 (+)
G25309 NA non-coding downstream 287754 2283290 ~ 2283777 (+)
LOC122342451 NA other upstream 206144 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 321281 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 662397 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 703016 1288297 ~ 1291224 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other upstream 745071 1245578 ~ 1249169 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 1104201 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1123979 3119515 ~ 3306758 (+)
G25514 NA other downstream 1486093 3481629 ~ 3502094 (+)
G25551 NA other downstream 1741966 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 2234093 4229629 ~ 4231092 (+)

Expression


Co-expression Network