G25310 (dock4b,LOC107584044,LOC107658732,LOC107656358,LOC107725897)



Basic Information


Item Value
gene id G25310
gene name dock4b,LOC107584044,LOC107658732,LOC107656358,LOC107725897
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2288180 ~ 2302399 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU37613
ttttttttttttttttTTCTGGTTGGAAATGTTTATTAGACAGGAAGTCATTAGAATGTAAATGTGTTAGGCGCTTTCTCGACCTCATTTCCCTACGCTCacaacatacataaatatttgacatttatcaTCTTAATTTGCTGTTCAAACATTCAAAGCTGTAAATTTGTTATAGCTACACTTCTGTTAAAAACACGTTATGTACAATAGACGAGATATTGCATTTGGCATAATTACAACAATCTTGTTATTTCATGTACAGTACTGATTTTTGCGAGCGCCGTCATTTGGCATTCGCAACAAATCCCAGTCTCGTAAAATGCGACCGTAAAAAGGACAAAGCAATCATAGTCGAGTTAATTTGAGAATTAATAACAGCAAACGAATGAGGACGCTGTACTGCGATCACATTTTCCACTAAAACGAAACAATAGTATATTTGCCCGGGTTGCATTTGCAGAATTGTAAACGTGGAAATATTCGGACGACTGATGAAACTGTGCATGCAGAAACATTCCTGGACATTTCGCAACCATGTGTTGGCGTCTGTGCATGTTAAATAATCGTTATAGACGGTCGCTTCACCTGCATTTCATACAGGTAAATGAAAGATGAGGTGCAGTCCAGAGGTGCCAATCCAAATTTGACTGGAACGCATGAGTTTAGATTAGAAGTGTGAACAGGAATGGCAGCCCTTTATTGCCCAATGGCAGCTCGAGTCTCTGTAATGCCCTAGGTTGATCAAGTACCTTTCATATGAAGCTCTTTTACCAGGCTATATCACTTCGTCTCACTGTCTTTTAGACAGTATGCTGTAAAGTGGTCCGGTGCACCGTGAGTTGTACGGTGAAGTCTATTACAGTGGATGTCTAACGCTCCATTTGCATCCTAATAAAGCATCTTCGGGTTCAAGACATCCATTTTCCTTACAGCCCACCTGTTCCTTTGGCACAACACTTGGCAAAACTCCACTAAAGTCCATCTCCGTTTATAACGCGTGGGCATGTGCGCTTGGTACGGAAACCCTTGTTGGGAATTTTTCGCACCACCTACACGAGTTCCGATCATTCAGACCCCAAACCCCTCAGAAATCCATCCATGCTGCTGGGCTCTGAAAGCCCCTATAGACTCGCCCACAAGCGGTCTCTAATCAGTCAGACCCCAAACTCCAAAGAATCTATCAATGCTGTATGGCTTTGAAAGCCCATATCGACTCTCCCACAATTGCGTTCCAATTACATAAATGGGCTCAAGGTACAACTTCACATTAGTCAATGCAAAGGTGGCAGTTCatacagtgaaatgttttttttttgacgaatCGATGAAAGCTCTTTGCTTGTGGATTTTTAGTAATGAGAATAGAGACTATGGTAGCTTGGTCTTACAAAAGCAGCAACCTATCTAAAGGCCTATTCACACGGAATGCGagcttcctctttttttttttaagtgacctGTCGAACTGCAAATAAAActtactgaatttttttttatttatcgcTGCTGATGCACCTACTGCAACCAGAATTAAACATGTGACTATTGAAGTCTATGCACACCTCTTTTTGAACACGACAATGGCATAAGTAATTCTAGTTTGTGAACTCTTTGTAATGCAGACATAAACCCAGTGTCCTTTAAAGGTCCActaataaaatatgtgcatataaaataaatgtgcataaatataaaCCCACAGGGCACATGGGAATTTGAGCAAAGGTGCACTAAACAATTACATATAATGCCAATGCAGGAAAGTGAATTTAATGCAAATCTGCAAtgaataacattattttatggaCTAATGTGCTAGTTTTCGCATTCGGTGTGAATAGGCCTTTCGACCCCAAGTTAAATGCAATCCTGAACATATTGTGCTAACATTAAAGAGGACTTTTAGCACCTTTTGTCTCAAAGTACAAAGTACTTTTAATCGTGCATTTCTCATTGATAAAAAGACTCTTAAGGCAAACATGTCTTGTATCAACttctataaatacacattagcatctatgaaaaaaatctgtgaaaataCCACGGTACTAAGTTCTGTTTAGAGTTAATTAAGGGGCTCGGGTTACTTGACAAGCAAAGTTATAATTTTGGAcctaaaaagtgcattaaacgCAGTCATACCCTTGTTTCCc
>TU37615
GTTGGAAATGTTTATTAGACAGGAAGTCATTAGAATGTAAATGTGTTAGGCGCTTTCTCGACCTCATTTCCCTACGCTCacaacatacataaatatttgacatttatcaTCTTAATTTGCTGTTCAAACATTCAAAGCTGTAAATTTGTTATAGCTACACTTCTGTTAAAAACACGTTATGTACAATAGACGAGATATTGCATTTGGCATAATTACAACAATCTTGTTATTTCATGTACAGTACTGATTTTTGCGAGCGCCGTCATTTGGCATTCGCAACAAATCCCAGTCTCGTAAAATGCGACCGTAAAAAGGACAAAGCAATCATAGTCGAGTTAATTTGAGAATTAATAACAGCAAACGAATGAGGACGCTGTACTGCGATCACATTTTCCACTAAAACGAAACAATAGTATATTTGCCCGGGTTGCATTTGCAGAATTGTAAACGTGGAAATATTCGGACGACTGATGAAACTGTGCATGCAGAAACATTCCTGGACATTTCGCAACCATGTGTTGGCGTCTGTGCATGTTAAATAATCGTTATAGACGGTCGCTTCACCTGCATTTCATACAGGTAAATGAAAGATGAGGTGCAGTCCAGAGGTGCCAATCCAAATTTGACTGGAACGCATGAGTTTAGATTAGAAGTGTGAACAGGAATGGCAGCCCTTTATTGCCCAATGGCAGCTCGAGTCTCTGTAATGCCCTAGGTTGATCAAGTACCTTTCATATGAAGCTCTTTTACCAGGCTATATCACTTCGTCTCACTGTCTTTTAGACAGTATGCTGTAAAGTGGTCCGGTGCACCGTGAGTTGTACGGTGAAGTCTATTACAGTGGATGTCTAACGCTCCATTTGCATCCTAATAAAGCATCTTCGGGTTCAAGACATCCATTTTCCTTACAGCCCACCTGTTCCTTTGGCACAACACTTGGCAAAACTCCACTAAAGTCCATCTCCGTTTATAACGCGTGGGCATGTGCGCTTGGTACGGAAACCCTTGTTGGGAATTTTTCGCACCACCTACACGAGTTCCGATCATTCAGACCCCAAACCCCTCAGAAATCCATCCATGCTGCTGGGCTCTGAAAGCCCCTATAGACTCGCCCACAAGCGGTCTCTAATCAGTCAGACCCCAAACTCCAAAGAATCTATCAATGCTGTATGGCTTTGAAAGCCCATATCGACTCTCCCACAATTGCGTTCCAATTACATAAATGGGCTCAAGGTACAACTTCACATTAGTCAATGCAAAGGTGGCAGTTCatacagtgaaatgttttttttttgacgaatCGATGAAAGCTCTTTGCTTGTGGATTTTTAGTAATGAGAATAGAGACTATGGTAGCTTGGTCTTACAAAAGCAGCAACCTATCTAAAGGCCTATTCACACGGAATGCGagcttcctctttttttttttaagtgacctGTCGAACTGCAAATAAAActtactgaatttttttttatttatcgcTGCTGATGCACCTACTGCAACCAGAATTAAACATGTGACTATTGAAGTCTATGCACACCTCTTTTTGAACACGACAATGGCATAAGTAATTCTAGTTTGTGAACTCTTTGTAATGCAGACATAAACCCAGTGTCCTTTAAAGGTCCActaataaaatatgtgcatataaaataaatgtgcataaatataaaCCCACAGGGCACATGGGAATTTGAGCAAAGGTGCACTAAACAATTACATATAATGCCAATGCAGGAAAGTGAATTTAATGCAAATCTGCAAtgaataacattattttatggaCTAATGTGCTAGTTTTCGCATTCGGTGTGAATAGGCCTTTCGACCCCAAGTTAAATGCAATCCTGAACATATTGTGCTAACATTAAAGAGGACTTTTAGCACCTTTTGTCTCAAAGTACAAAGTACTTTTAATCGTGCATTTCTCATTGATAAAAAGACTCTTAAGGCAAACATGTCTTGTATCAACttctataaatacacattagcatctatgaaaaaaatctgtgaaaataCCACGGTACTAAGTTCTGTTTAGAGTTAATTAAGGGGCTCGGGTTACTTGACAAGCAAAGTTATAATTTTGGAcctaaaaagtgcattaaacgCAGTCATACCCTTGTTTCCcccctctctcactcttatatatatatatatatatatataaataaaaaaaaaatattacacagtcTGTTTCATACATGAAATCTAAATGGGGAATTTGTAATGGTAAACCCAGAGAGGTTAAGTGAAAAAGTGCAGTCGGTGGGGATGGAGGGAAGGAAGCAGCGTTAGAGCTGGGAGACTTTCCTGGGAATGGGTCGGGGTCTGGGAAACTGGTCGGTCCGGCGCGGCTCAGTGTCTTGCCTTCTAATCTGGTGCGGTTTGGGAGGAATGGGTGGTGCGTCGATGCTCGGAGGAATCGACAGGCTCGGCGGAAGCGGGACCTGTCTGCGGGGGTTGTTCCGCTCGTGTATGCTGTAAGGAGGCGGGGTCTTGTTCTCTCGCCGAATGAGCTCGTCTGATCCGCTGGAGGCGGAGTTTGGGAGTGCATTGTCAGTGGGTGTGTTCTCAGTTCCCGAGGCCTCGGAGACGCTGCAGCGACTGAGAGACGAGATACCACTGCTGTAGCTTCCAGAAAGCACCGGAGAATTCGACACCAACCCTGTCGACTGGCACTCGGTGGGCGAGGGGGTGAACGGAGGCG

Function


symbol description
dock4b Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be located in cytoplasm. Orthologous to human DOCK4 (dedicator of cytokinesis 4).

NR:

description
PREDICTED: dedicator of cytokinesis protein 4-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU37613 False 2153 lncRNA 0.39 2 2288180 2301771
TU37615 True 2711 lncRNA 0.42 2 2299640 2302399

Neighbor


gene id symbol gene type direction distance location
LOC122343453 LOC107710120,LOC107658877,LOC107726057,LOC107580024,LOC107656361,LOC107584004,LOC100535105 coding upstream 98432 2178532 ~ 2189748 (+)
utp20 utp20,LOC107658916,LOC107710084,LOC107656365,LOC107725898 coding upstream 265870 2001089 ~ 2022310 (+)
usp18 LOC107725967 coding upstream 294592 1990505 ~ 1993588 (+)
pex26 LOC107658896,LOC107583978,LOC107725950 coding upstream 298243 1987476 ~ 1989937 (+)
rhno1 LOC107736423,LOC107658898,LOC107583982 coding upstream 301006 1985568 ~ 1987174 (+)
ifrd1 ifrd1,LOC107580056,LOC107726045,LOC107656357,LOC107658876,LOC107579159 coding downstream 86580 2388979 ~ 2394441 (+)
foxp2 foxp2 coding downstream 203547 2505946 ~ 2602501 (+)
mdfic mdfic,si:ch211-262n1.4,LOC107658868,LOC107656347,LOC107580133,LOC107584008 coding downstream 320140 2622539 ~ 2641837 (+)
elk3 elk3,LOC107743764 coding downstream 544875 2847274 ~ 2862389 (+)
si:ch1073-67j19.1 LOC107725978,LOC107743829,LOC107580374 coding downstream 605060 2907459 ~ 2908695 (+)
G25309 NA non-coding upstream 4403 2283290 ~ 2283777 (+)
G25300 NA non-coding upstream 120183 2167733 ~ 2167997 (+)
G25288 NA non-coding upstream 181086 2106763 ~ 2107094 (+)
G25249 NA non-coding upstream 237228 2049224 ~ 2050952 (+)
LOC122342875 NA non-coding upstream 255131 2028796 ~ 2033049 (+)
G25313 NA non-coding downstream 1569 2303968 ~ 2305859 (+)
G25327 NA non-coding downstream 100046 2402445 ~ 2402674 (+)
G25330 NA non-coding downstream 102775 2405174 ~ 2405397 (+)
G25331 NA non-coding downstream 105172 2407571 ~ 2408937 (+)
G25332 NA non-coding downstream 106570 2408969 ~ 2410645 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 292644 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 500084 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 615221 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 956337 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 996956 1288297 ~ 1291224 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 797338 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 817116 3119515 ~ 3306758 (+)
G25514 NA other downstream 1179230 3481629 ~ 3502094 (+)
G25551 NA other downstream 1435103 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 1927230 4229629 ~ 4231092 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G75702 NA non-coding NC_048565.1 CM023219.2 68232213 ~ 68285626 (+)
mexican tetra (Astyanax mexicanus) G62036 dock4,LOC108425388 non-coding NC_035903.1 CM008306.1 4999241 ~ 5002904 (+)