G25330


Basic Information

Item Value
gene id G25330
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2405174 ~ 2405397 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU37640
CAGGCCACAGAGCCGCTCTCACTTAGCGGTATCACAAAGCACTCCAACTGCGGCTGTGCTCGGTGTAATTGACTTGATGAGTCCATTGAGCTGTGGTATCGGGACGAGAGTGGGCTGAAGTGGGGGGAGAGGGTGGTTATTAGAAATGACACCCAATGGAGCCATTTGGGTGCTGCTGTAAAACCGCAGTGAAGGTCAAGAGCGCTGCTGCTCCAGAGACGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37640 True 224 lncRNA 0.55 1 2405174 2405397

Neighbor

gene id symbol gene type direction distance location
ifrd1 ifrd1,LOC107580056,LOC107726045,LOC107656357,LOC107658876,LOC107579159 coding upstream 10733 2388979 ~ 2394441 (+)
LOC122343453 LOC107710120,LOC107658877,LOC107726057,LOC107580024,LOC107656361,LOC107584004,LOC100535105 coding upstream 215426 2178532 ~ 2189748 (+)
utp20 utp20,LOC107658916,LOC107710084,LOC107656365,LOC107725898 coding upstream 382864 2001089 ~ 2022310 (+)
usp18 LOC107725967 coding upstream 411586 1990505 ~ 1993588 (+)
pex26 LOC107658896,LOC107583978,LOC107725950 coding upstream 415237 1987476 ~ 1989937 (+)
foxp2 foxp2 coding downstream 100549 2505946 ~ 2602501 (+)
mdfic mdfic,si:ch211-262n1.4,LOC107658868,LOC107656347,LOC107580133,LOC107584008 coding downstream 217142 2622539 ~ 2641837 (+)
elk3 elk3,LOC107743764 coding downstream 441877 2847274 ~ 2862389 (+)
si:ch1073-67j19.1 LOC107725978,LOC107743829,LOC107580374 coding downstream 502062 2907459 ~ 2908695 (+)
LOC122342536 NA coding downstream 506781 2912178 ~ 2913479 (+)
G25327 NA non-coding upstream 2500 2402445 ~ 2402674 (+)
G25313 NA non-coding upstream 99315 2303968 ~ 2305859 (+)
G25310 dock4b,LOC107584044,LOC107658732,LOC107656358,LOC107725897 non-coding upstream 102775 2288180 ~ 2302399 (+)
G25309 NA non-coding upstream 121397 2283290 ~ 2283777 (+)
G25300 NA non-coding upstream 237177 2167733 ~ 2167997 (+)
G25331 NA non-coding downstream 2174 2407571 ~ 2408937 (+)
G25332 NA non-coding downstream 3572 2408969 ~ 2410645 (+)
G25334 NA non-coding downstream 6666 2412063 ~ 2412584 (+)
G25346 gpr85,LOC107580073,LOC107710116,LOC107726048,LOC107658873,LOC107584006 non-coding downstream 34062 2439459 ~ 2516391 (+)
LOC122343307 NA non-coding downstream 34098 2439495 ~ 2454289 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 409638 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 617078 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 732215 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 1073331 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 1113950 1288297 ~ 1291224 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 694340 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 714118 3119515 ~ 3306758 (+)
G25514 NA other downstream 1076232 3481629 ~ 3502094 (+)
G25551 NA other downstream 1332105 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 1824232 4229629 ~ 4231092 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G477505 NA non-coding CI01000335 null 555248 ~ 612384 (+)