G25346 (gpr85,LOC107580073,LOC107710116,LOC107726048,LOC107658873,LOC107584006)


Basic Information

Item Value
gene id G25346
gene name gpr85,LOC107580073,LOC107710116,LOC107726048,LOC107658873,LOC107584006
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2439459 ~ 2516391 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU37666
ttttttttttttttttttttttgttttgcaaaatgtaaaattttattttcaaaaatgtaagcaACAGATTACACAGTTAACTTTCAGCAATTGCAGTCCTAACTTAAACAGTACTCACATTCGGGACTTCAAAATGAAAGACTCACAAACTTACACACTATCTACctataatatacaaaaagaatacagaataaatattaaaatggccACAAGAGAAAAAAGTAAGTTAATCAAAACAATTAGTAGAGAGCAAATGTTGGGAAAGTAGAAACAAGACTCTGTGCcttaaatacaatgttttttgtttttcctattacattttttacaaattgtgCAAGATTTCAGACTAAGGCTCTGGTCTTGACATGACAGCTGTTCGCCaagcacgcgcacacacgcgcacacacacacacacacacacacactcaagcacaGACGTCCACTCACACATGCTCCCTGTGCTCTGCGCACTCGGTGGGGTGTAGCAAACGTTACAGGGTAAGAAATGGGCTGTCGGTGCACGGGCTGTGCCTGTGATAGTGGTGGTGGATACCGTGTTTCAAATGAACATGCACTTCACCCTGATGCGGAAAGCCTCCCGATATGTCTCAAGGAGACATTTTAGAGGAGCgcgtttgaaatgaaaacatgaagaaaacaCCAGAACCATTAAGGCAAGAACAGCTGGAGTGGAATCTGTAACAAAATTGGCGTGTTCGGGTACATGGATATGCCACACTGAACTTAGCTTAACTGGTTCTCCACTGTCAGTTTAAGTACAAGGTTCTCAAGAGCAACGTTTTAAAATTCAAACAGTAGTTTTTTGACTTAGAAAAATGAGATAAGAAAATAACATTGCCAGACAACAGAGACATACCATATGGATCATAAAACTACAGGAAATAATTTAAGTTGCAATTCCGGAAACCACACGACAGTACCCGCCCCTTAAGACCCGCCCACCAGCCCGCCCCAACCCCAccctaaaaggaaaaaagatatCACTTACATTTAAACCAATTTATCCTCTCGTGAAGGTGTATTCCAACAGAGTTAGTCACCCCACATGTTTTGTTTACTTACAGTGAAAGAGAAGTCTGTTGCAGATTAAAGCATTCGTATTTCAGTTTGGGAAAAACAAGACATCCTTGCAATGCAACGGCGCGAAAAAAGCATCTTCGGGTCTTCTCGTTAGTGCAACTTTTTAGACACAAATTCCAGTGATTCCGTAAGGTGACAGTTTGATTTCTTTACACCCTTTCCAGAGTCTTCCAGATATCCAAAGCAAAGGTCAGTCCCTTCTCGACGTatccgtttttttattttcttttctttccatttttttccatgttttattttttcgatttttttttcttttttctttttttttttttgcgtgttgGGTTTCAAATGGCCTTCCGCATCGGTTGTTTACTAGAACATAAACGCGGGACGTGTCCGTTCATCATCATATTCCATCAGACGGTTCAACTACAGGCCTCGAAAAGGGAGCGAGAGGAAcgggagaagagaggagagagctGTACAACATCCCTGATCGACCAGGGCATCCCAACAAAAACCACATCGGATAAACAAGAAACGCCACCGAACCTTCATATAACACAGTAGGGTTCCCTCGGTAACCTGGATTTTCTGCAGTAGAGGAGCGTGGTGCTGAAGCATCTCCGGAGCTCCCGGTTGGAGAAGATGCAGATGAATGGGTTGACTCCCGCCTGGGCGAAACTCATCCATACGGCGGCCGTCAGGTAGCCTCCCGGGATCACTGGGCCTCGGGCGAACACCCTCCAGTAGCAGGCTACAAGGTAGGGTCCCCACAGGCTCAAGAAGAAGAAGGTAATGATGTAGAACATCCTGCTTATCCTCTTTTCAGTCTTAAACTCGTCCAGCACCAGCAGACGCCTGCGGCCCGCCGCATTGCTGTTCTGCCGGATTCCCAGCAGGGTGGGAGGCGTGGGGCCTCGGCCGAAGCCCGCCAGCCAGTTCGCCGCAGCCTGGCCGCTCGCCCCCGGGCCGTGGAAGGTCCAGTTCTGGCTGACGGCGGGCACGAACTGCACCGGCTTCATCTTTCGGCGGTCGTGGACGAAAAAGATGAGCTTGAGGTAGACAAGCTGGGTGGCCAGGAGGATGAGTGCAAGGAGCAGCATGAAGCCCAACGAGTCATTGGCGCGGAAGGAGCGGTGCTGGAAGGTGCACTGGTCCTCCTCGCGGATGAAGGAGTATGTGCCCACATCCAGCACTGGAGGGAACGCCATGGCTACTGACAGCGTCCACACCATGCATATGACGGCCAGGCATGTCCAGAAGGTCAGCCGCTTGGTGTAAAAGCGGTGGTGGGCGATGGCCAGGTACCGCGTCACGCTAACGCAGAACAGCATGAAGGCAGTGTGGAAACAGGAGAGCACGCCCAAGAAGGCGATCACTTTGCAGGTCAGCGTGCCGTAGGTCCAGGCTGAGCCATTCTTGACGGAGGTGAAGACGAAGGGGAAGCAGATGGCCGAGCGGAGGATGTCCGAAGCGCAGAGGTCCAGCAGGAAGTAGTAGGGTGCTCGATGAAGGCTCTTGTCTTTGACCAGCAGGATGGAGATCAGGAGGTTTCCGACCACGCCAACGCCGATGATGAAACCCAGGGAGGTCAGTTTAAGGAAAGTGGCGAGCGGAGAGACATTCTGCAAGATGTTGTGGTCCCCTGCATGGCTGTAGTTCGCCATAGATGGAGAAGGGATCATAGAGAACGCTTAAAGCTTTAGCCAAGTATCATGATCTGGATGGAGCGTGGAGCGATAGATCCATCTGGTGTGCTTTCAAGCAGGTTCCAGCCTTGTTCGTCTCTGCCTCTCTTCTAAGGCATCCTTTGTTCCTTTGTCTCATCACACCTAAAAGGATCCCTGAAAAACATGATCCACCCATTAGGATTCGCTCACACAAAACAAACTGGGGGGCTTTGCGTTGCATCGCTCATTTCTTTTGTCATTCAGATTGCTTTTCTAATTGCATACGAAATTGCGGCTGCAACGGTATGCCGTCTGAGCCGAGCTCATACAGTTGCTTAATTCAGCACAAGGATTCAGCGTCGGACACCGACATAAATCCTGGGTAAAATAACAGACCCCCACCCCCAACATCTCCCCTTTTTCcaaagcaaattaaataaataacagcaaagACACAGAGAGTGCAGTCGACAAGATGCTCATCACCACGGCTAGACATCCGTCTAGAGGCATATTCATCTGTGCTATGATAGAAAAAGACTTGAAATCTAATGATTGTTATCCGCTACACCCGAAAGGAACATTTGTCGAAATGCAGCAAGAAAAGCTGTTGATCACACCCAAAGATCCTGCAGAATCTGACCGTGTTCATTCCCTCTGTTTATCGTGATACTGTGTAAAATCAGCCATGAATCCTCATATGATTGACTGTATAAAGGAATATGAAGAAATGCATCATGCTATATTTTAGATCTATATAGGTTATTTGCGTCTTTCATACAGACATTATGT
>TU37667
ttttttttttttttttttttttgttttgcaaaatgtaaaattttattttcaaaaatgtaagcaACAGATTACACAGTTAACTTTCAGCAATTGCAGTCCTAACTTAAACAGTACTCACATTCGGGACTTCAAAATGAAAGACTCACAAACTTACACACTATCTACctataatatacaaaaagaatacagaataaatattaaaatggccACAAGAGAAAAAAGTAAGTTAATCAAAACAATTAGTAGAGAGCAAATGTTGGGAAAGTAGAAACAAGACTCTGTGCcttaaatacaatgttttttgtttttcctattacattttttacaaattgtgCAAGATTTCAGACTAAGGCTCTGGTCTTGACATGACAGCTGTTCGCCaagcacgcgcacacacgcgcacacacacacacacacacacacactcaagcacaGACGTCCACTCACACATGCTCCCTGTGCTCTGCGCACTCGGTGGGGTGTAGCAAACGTTACAGGGTAAGAAATGGGCTGTCGGTGCACGGGCTGTGCCTGTGATAGTGGTGGTGGATACCGTGTTTCAAATGAACATGCACTTCACCCTGATGCGGAAAGCCTCCCGATATGTCTCAAGGAGACATTTTAGAGGAGCgcgtttgaaatgaaaacatgaagaaaacaCCAGAACCATTAAGGCAAGAACAGCTGGAGTGGAATCTGTAACAAAATTGGCGTGTTCGGGTACATGGATATGCCACACTGAACTTAGCTTAACTGGTTCTCCACTGTCAGTTTAAGTACAAGGTTCTCAAGAGCAACGTTTTAAAATTCAAACAGTAGTTTTTTGACTTAGAAAAATGAGATAAGAAAATAACATTGCCAGACAACAGAGACATACCATATGGATCATAAAACTACAGGAAATAATTTAAGTTGCAATTCCGGAAACCACACGACAGTACCCGCCCCTTAAGACCCGCCCACCAGCCCGCCCCAACCCCAccctaaaaggaaaaaagatatCACTTACATTTAAACCAATTTATCCTCTCGTGAAGGTGTATTCCAACAGAGTTAGTCACCCCACATGTTTTGTTTACTTACAGTGAAAGAGAAGTCTGTTGCAGATTAAAGCATTCGTATTTCAGTTTGGGAAAAACAAGACATCCTTGCAATGCAACGGCGCGAAAAAAGCATCTTCGGGTCTTCTCGTTAGTGCAACTTTTTAGACACAAATTCCAGTGATTCCGTAAGGTGACAGTTTGATTTCTTTACACCCTTTCCAGAGTCTTCCAGATATCCAAAGCAAAGGTCAGTCCCTTCTCGACGTatccgtttttttattttcttttctttccatttttttccatgttttattttttcgatttttttttcttttttctttttttttttttgcGATTTTTTTTGGA

Function

symbol description
gpr85 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in central nervous system and retina. Orthologous to human GPR85 (G protein-coupled receptor 85).

NR:

description
PREDICTED: probable G protein-coupled receptor 85

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37666 True 3527 lncRNA 0.47 2 2439459 2470590
TU37667 False 1409 lncRNA 0.39 3 2439459 2516391

Neighbor

gene id symbol gene type direction distance location
ifrd1 ifrd1,LOC107580056,LOC107726045,LOC107656357,LOC107658876,LOC107579159 coding upstream 45018 2388979 ~ 2394441 (+)
LOC122343453 LOC107710120,LOC107658877,LOC107726057,LOC107580024,LOC107656361,LOC107584004,LOC100535105 coding upstream 249711 2178532 ~ 2189748 (+)
utp20 utp20,LOC107658916,LOC107710084,LOC107656365,LOC107725898 coding upstream 417149 2001089 ~ 2022310 (+)
usp18 LOC107725967 coding upstream 445871 1990505 ~ 1993588 (+)
pex26 LOC107658896,LOC107583978,LOC107725950 coding upstream 449522 1987476 ~ 1989937 (+)
mdfic mdfic,si:ch211-262n1.4,LOC107658868,LOC107656347,LOC107580133,LOC107584008 coding downstream 106148 2622539 ~ 2641837 (+)
elk3 elk3,LOC107743764 coding downstream 330883 2847274 ~ 2862389 (+)
si:ch1073-67j19.1 LOC107725978,LOC107743829,LOC107580374 coding downstream 391068 2907459 ~ 2908695 (+)
LOC122342536 NA coding downstream 395787 2912178 ~ 2913479 (+)
phyh phyh,LOC107743808 coding downstream 399770 2916161 ~ 2920243 (+)
G25334 NA non-coding upstream 26875 2412063 ~ 2412584 (+)
G25332 NA non-coding upstream 28814 2408969 ~ 2410645 (+)
G25331 NA non-coding upstream 30522 2407571 ~ 2408937 (+)
G25330 NA non-coding upstream 34062 2405174 ~ 2405397 (+)
G25327 NA non-coding upstream 36785 2402445 ~ 2402674 (+)
LOC122342588 NA non-coding downstream 145723 2662114 ~ 2663045 (+)
LOC122342427 NA non-coding downstream 149951 2666342 ~ 2679743 (+)
LOC122342395 NA non-coding downstream 170033 2686424 ~ 2719361 (+)
LOC122343412 NA non-coding downstream 210411 2726802 ~ 2787657 (+)
LOC122343411 NA non-coding downstream 273687 2790078 ~ 2825789 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 443923 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 651363 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 766500 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 1107616 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 1148235 1288297 ~ 1291224 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 583346 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 603124 3119515 ~ 3306758 (+)
G25514 NA other downstream 965238 3481629 ~ 3502094 (+)
G25551 NA other downstream 1221111 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 1713238 4229629 ~ 4231092 (+)

Expression


Co-expression Network