LOC122343417


Basic Information

Item Value
gene id LOC122343417
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2203585 ~ 2289119 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU37686
AGACAGAATTACAGAGGTTTCCCTGGGCGACTGTTTCTCTGAAACTCCAAGgtGGAGACCTAATTTTGCCGCCACCCGGCTCTATTTTGCAAACGTCAAGAAATCATATAATCACAGGGCCTGAGATGGAAGACAGGCTAAAATCGTTCTAAACAGCATCTGTTCAACCGTAACTCATCAAGCACCCCACGAGGCGTAAAGGATGTCCACTACCCGCTACTCTTTGGCCAAAGCACAAATGCAGCATATTTAGTCCTTTAACTGGCAAAAGCGAACACACCTCAGGGAAGCAGCAGGAACAGGAAGATGTAAAATCGTCTGTCTTCTGAGAGTGATTTCCCCGAATGGATAGAAGAGGC
>XR_006250773.1
gttttgtttatctgtttaCTTGGCATGTAATGAATTTTTAAGCATACCGTCTTCATAAAGCAATGTAAGTGCACGTATATGACCGGCGTTCTGCACTTTTCACCTTGAAGGTTTGCGGTCTGTCTGAGGCTGTGGAGACGTGCTTTGAGACGATGTTAAACACTGATGCCCGGCCTTGTCTGATGCTGATGGAGGATGACAGGACTGAGCGGAAAACATCACAGCCGACAGAATAAACAATGTGTGCAAGGAACAGTATTTACATGCTATCCAACGTACTTCATCTCATGATTCTGTCCAGACGGAGGCATCACAGCAGACAAGATGATACATGAACATTGGATTCAGACATGCTTTGATGCCTTTCTACCTTGAGATACTACTGAAGAAGACAGAATTACAGAGGTTTCCCTGGGCGACTGTTTCTCTGAAACTCCAAGGTGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37686 False 359 lncRNA 0.47 4 2203585 2279282
XR_006250773.1 True 446 lncRNA 0.44 3 2279226 2289119

Neighbor

gene id symbol gene type direction distance location
tnnt2e tnnt2e,LOC107658902,LOC107725993,LOC107656364,LOC107710083,LOC108425385 coding downstream 160724 2032823 ~ 2042861 (-)
arl1 arl1,LOC107576237 coding downstream 179376 2022325 ~ 2024209 (-)
slc5a8 LOC107710085 coding downstream 203510 1995442 ~ 2000075 (-)
foxm1 LOC107658881,LOC107710101,LOC107656265 coding downstream 218527 1979107 ~ 1985058 (-)
pgm3 pgm3,LOC107579473,LOC107656266,LOC107658887 coding downstream 231175 1965852 ~ 1972410 (-)
tmem168a tmem168a,LOC107658875,LOC107726047,LOC107710117,LOC107656353 coding upstream 126547 2415666 ~ 2423463 (-)
gpr85 gpr85,LOC107580073,LOC107710116,LOC107726048,LOC107658873,LOC107584006 coding upstream 177968 2467087 ~ 2471272 (-)
ppp1r3aa LOC107658872,LOC107584007,LOC107726069 coding upstream 210655 2499774 ~ 2504213 (-)
tfec LOC107584009,LOC107725982,LOC107658865,LOC107710111,LOC107580185,LOC107656331 coding upstream 494342 2783461 ~ 2823147 (-)
lta4h lta4h,LOC107658863,LOC107656327,LOC107744078 coding upstream 546729 2835848 ~ 2845005 (-)
LOC122343454 NA non-coding downstream 20916 2167305 ~ 2182669 (-)
G25299 LOC108267243 non-coding downstream 39877 2163426 ~ 2163708 (-)
G25298 LOC107549254,LOC107563058 non-coding downstream 40266 2162530 ~ 2163319 (-)
LOC122343450 NA non-coding downstream 85260 2106764 ~ 2118325 (-)
G25277 NA non-coding downstream 170929 2032241 ~ 2032656 (-)
LOC122343423 NA non-coding upstream 245086 2534205 ~ 2538006 (-)
G25625 NA non-coding upstream 691040 2980159 ~ 2996458 (-)
LOC122342459 NA non-coding upstream 827285 3116404 ~ 3117297 (-)
LOC122342458 NA non-coding upstream 828360 3117479 ~ 3119550 (-)
G25673 wnt5b,LOC107656325,LOC103026771,LOC107580320,LOC107744029,LOC107726030 non-coding upstream 1091539 3380658 ~ 3676399 (-)
tnni4a zgc:101560,LOC107725970,LOC107584059,LOC107658770,LOC107656258,LOC107581287 other downstream 105784 2091351 ~ 2097801 (-)
cald1a cald1a,LOC107583995,LOC107725991,LOC107658884,LOC107656362,LOC107710121 other downstream 115006 2042953 ~ 2088579 (-)
rsph9 rsph9,LOC107658900,LOC107583979,LOC107579672,LOC107710090,LOC107656226 other downstream 300922 1898403 ~ 1902663 (-)
ccdc167 ccdc167 other downstream 548759 1653591 ~ 1654826 (-)
zgc:113263 LOC107658878,LOC107583959,LOC107725918,LOC107656382,LOC107711463 other downstream 585287 1609360 ~ 1618298 (-)
dock4b dock4b,LOC107656358,LOC108425388 other upstream 10516 2299635 ~ 2375716 (-)
LOC122342907 NA other upstream 183165 2472284 ~ 2473068 (-)
ccdc3a ccdc3,ccdc3a,LOC107725961,LOC107658768,LOC107580337,LOC107744050 other upstream 710763 2999882 ~ 3012214 (-)
LOC122342805 NA other upstream 729973 3019092 ~ 3021512 (-)
LOC122342819 foxp2,foxp4,LOC107725896,LOC107728618,LOC107656011,LOC107675840 other upstream 1245543 3534662 ~ 3577123 (-)

Expression


Co-expression Network