LOC122343423


Basic Information

Item Value
gene id LOC122343423
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2534205 ~ 2538006 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU37715
CGCGCGGCTCACGgcatacgcacacacactttctctctctccttctcctgCATTCGGACTCCAACCGAGAGAGGATTTAACACACGCTGCCGGCAGCGGAGGACGTCCCGAGCCCCTAAAAACGCGAGATGTTTCTCCTCGCTGCTCCCGCAGACAGGAATCCGCTCACAGAGACGAGAGCCACGCTCTCCCCCAGGAGAGGAGTACAAAGGCCAGTCTGCGCGCGGCAGATGCAAAACCAAGTCCATCTGCTGCAGGCTTCCCATCGCCACATGGAAATTGAAAAGTGAGGGGAGCGTTCGCGTAGACGCCGCTGGAACGTGAGCGAGGAACCAGCTGTTGGGCTTTGGGCCGCAAGGTCAATGAGGACAAACAATTCCAGCAGCGGCTCTCGAGCGCTTGCAGAAGAAAGTGTCGCGTGAGGGGGGGATGGACTCGTGTGGTGGCAGAGCTGGTGTCTCCGAGCGCTGGCATAATTTCCATGGCAACCCCCTTAACtattaattttcaattaaagcAGACATAAAACGCCCTGCCCTGAGCCTCCAGAAGGTGTCAAGAGGAGGAAACCGGGCCTTTTCGGAGCCACGACACCACTGGGCTCCTTCATAGTGGCAAAAATCACATCACTGAACATTTAAgtcctgtttttatttcacaatcaCACCAGTGAGAACACCAAAACCACAACTGAAACTGATGCGTGGCAAATATTAGTGACTAATAGAACGATATTTAAGCTATTATGCCCCTTGGTCGATTACCAGAGGTGTTACCTCCC
>XR_006250774.1
aaaaaaaaaaaaaaacgacccCTATCTCCTGACAATTATTCCTTCATCTCCACTTGTCACCGAGCAATTACGACAGCGCAGACAGGGCCCAATAGGAGACGCGGGGCTTTGGGAAGCCGTGCGACCGGCCAGGAACGAGGGGAGGTGATGAAAAAAGTGCCTAAAATGGAAATGTGTCGCCCTGACCTGGAGCTTTTCTGCCGTTTGTGACGCACTGGAAATACTGGCATCATTAGCATTAAATCTCTCAGAAAAACTATCTGAAAATGCAACTGATCATTGCAGGTTTTACCGCTTCTGGGCTTCCTAATCTAAAAATGCTCttcaaaaaaaaactctctctccctatttctttcttaaaaatttttttttggaaaaggaTGTCTTTCGTCTTGCTGACCGAGTTGCTGACTGAAAGAAGCGAGTgtgcgagagagtgtgtgtgtgtgtgtgtgaccgtgCGCACCAGCGTCTCTCTCACAGCCTGCGCGCGGAGCCGAGGACTCGGATCGCGCTCCGCCAGCAGCCTCTCACTGCTCTCATTTGAGCGCGCGGCTCACGgcatacgcacacacactttctctctctccttctcctgCATTCGGACTCCAACCGAGAGAGGATTTAACACACGCTGCCGGCAGCGGAGGACGTCCCGAGCCCCTAAAAACGCGAGATGTTTCTCCTCGCTGCTCCCGCAGACAGGAATCCGCTCACAGAGACGAGAGCCACGCTCTCCCCCAGGAGAGGAGTACAAAGGCCAGTCTGCGCGCGGCAGATGCAAAACCAAGTCCATCTGCTGCAGGCTTCCCATCGCCACATGGAAATTGAAAAGTGAGGGGAGCGTTCGCGTAGACGCCGCTGGAACGTGAGCGAGGAACCAGCTGTTGGGCTTTGGGCCGCAAGGTCAATGAGGACAAACAATTCCAGCAGCGGCTCTCGAGCGCTTGCAGAAGAAAGTGTCGCGTGAGGGGGGGATGGACTCGTGTGGTGGCAGAGCTGGTGTCTCCGAGCGCTGGCATAATTTCCATGGCAACCCCCTTAACtattaattttcaattaaagcAGACATAAAACGCCCTGCCCTGAGCCTCCAGAAGGTGTCAAGAGGAGGAAACCGGGCCTTTTCGGAGCCACGACACCACTGGGCTCCTTCATAGTGGCAAAAATCACATCACTGAACATTTAAgtcctgtttttatttcacaatcaCACCAGTGAGAACACCAAAACCACAACTGAAACTGATGCGTGGCAAATATTAGTGACTAATAGAACGATATTTAAGCTATTATGCCCCTTGGTCGATTACCAGAGGTGTTACCTCCCCCTTGTGTCAGTTTTAAAATCTGACAGGATTGTCAATTGctaataaaaagcttttttttacaattttgtggTGAATTTAGCAACATTGCATGAAATAAGGTGTACAAATCCGATCTGCTGCCATTAAATTGTactatgcattaaataaaataaaaaattatagtatttaaaaactgaactAAGTAAGTAAAGTGCACAAACTCCACTAGCATAGTACTATATGATCATGCTTTCCTGCATAATTTTAGACAATACAAAGTAGCCTCGAAAATCTGACCATCTGTACATAATACCCGGAAGCAAACCTGACCTAGAAATATTGCAGAATCTTTAACATTTCttagtctttttttctattttcatttcattttatttccatttttaattcttCCATTTGGTTTATACCTTAttagattaatttttaaattgcacattttcattGAAACCCAGTTTGGCTGGTATTATATCATCCACCCTGCTTTCTAGATATTGGCAGTAGCCcttcatcatcaaaaaaaaacaaaaaaactaccGGTCGACCACCATTAAAGATTGAGCTAACAGCAGATTAAGCTGAGCTAGTGTGCACTCACTGAGAGTCTGATGTGCGTTTCAGGCCTCACAGAAACGCCGGCAGCATTAAAGCTGTTCTCTGGCTGGAGAGTTATCCACTTGAGCTCATCTCCGCCTCCGATCCATTCGGCTGATGACTGAGCCTGTGGAACGCACTCTGAGCTCGTAAACAGCCCTAATAAACTCTCAGCCAAGGGTCTGTCTGTATCCTCAGTGTACACTTACTTGCACGTGAGTTTGAAACAAAAAGCGACATtcaaacacaaatttaaaagtaTCTTAGTTCTTAATTTA

Function

GO:

id name namespace
GO:0019867 outer membrane cellular_component
GO:0046658 anchored component of plasma membrane cellular_component
GO:0031968 organelle outer membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0047173 phosphatidylcholine-retinol O-acyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37715 False 781 lncRNA 0.53 3 2535072 2537458
XR_006250774.1 True 2196 lncRNA 0.45 3 2534205 2538006

Neighbor

gene id symbol gene type direction distance location
ppp1r3aa LOC107658872,LOC107584007,LOC107726069 coding downstream 29992 2499774 ~ 2504213 (-)
gpr85 gpr85,LOC107580073,LOC107710116,LOC107726048,LOC107658873,LOC107584006 coding downstream 62933 2467087 ~ 2471272 (-)
tmem168a tmem168a,LOC107658875,LOC107726047,LOC107710117,LOC107656353 coding downstream 110742 2415666 ~ 2423463 (-)
tnnt2e tnnt2e,LOC107658902,LOC107725993,LOC107656364,LOC107710083,LOC108425385 coding downstream 491344 2032823 ~ 2042861 (-)
arl1 arl1,LOC107576237 coding downstream 509996 2022325 ~ 2024209 (-)
tfec LOC107584009,LOC107725982,LOC107658865,LOC107710111,LOC107580185,LOC107656331 coding upstream 245455 2783461 ~ 2823147 (-)
lta4h lta4h,LOC107658863,LOC107656327,LOC107744078 coding upstream 297842 2835848 ~ 2845005 (-)
cdk17 cdk17,LOC107658862,LOC107656329 coding upstream 325134 2863140 ~ 2904289 (-)
mcm10 mcm10,LOC107658860,LOC107726070,LOC107743741,LOC107656326 coding upstream 389799 2927805 ~ 2934976 (-)
nudt5 nudt5,LOC107658859,LOC107656337,LOC107726016,LOC107743836 coding upstream 397101 2935107 ~ 2938017 (-)
LOC122343417 NA non-coding downstream 245086 2203585 ~ 2289119 (-)
G25362 NA non-coding downstream 250427 2283285 ~ 2283778 (-)
LOC122343454 NA non-coding downstream 351536 2167305 ~ 2182669 (-)
G25299 LOC108267243 non-coding downstream 370497 2163426 ~ 2163708 (-)
G25298 LOC107549254,LOC107563058 non-coding downstream 370886 2162530 ~ 2163319 (-)
G25625 NA non-coding upstream 442153 2980159 ~ 2996458 (-)
LOC122342459 NA non-coding upstream 578398 3116404 ~ 3117297 (-)
LOC122342458 NA non-coding upstream 579473 3117479 ~ 3119550 (-)
G25673 wnt5b,LOC107656325,LOC103026771,LOC107580320,LOC107744029,LOC107726030 non-coding upstream 842652 3380658 ~ 3676399 (-)
LOC122342758 NA non-coding upstream 864818 3402824 ~ 3403502 (-)
LOC122342907 NA other downstream 61137 2472284 ~ 2473068 (-)
dock4b dock4b,LOC107656358,LOC108425388 other downstream 158489 2299635 ~ 2375716 (-)
tnni4a zgc:101560,LOC107725970,LOC107584059,LOC107658770,LOC107656258,LOC107581287 other downstream 436404 2091351 ~ 2097801 (-)
cald1a cald1a,LOC107583995,LOC107725991,LOC107658884,LOC107656362,LOC107710121 other downstream 445626 2042953 ~ 2088579 (-)
rsph9 rsph9,LOC107658900,LOC107583979,LOC107579672,LOC107710090,LOC107656226 other downstream 631542 1898403 ~ 1902663 (-)
ccdc3a ccdc3,ccdc3a,LOC107725961,LOC107658768,LOC107580337,LOC107744050 other upstream 461876 2999882 ~ 3012214 (-)
LOC122342805 NA other upstream 481086 3019092 ~ 3021512 (-)
LOC122342819 foxp2,foxp4,LOC107725896,LOC107728618,LOC107656011,LOC107675840 other upstream 996656 3534662 ~ 3577123 (-)
LOC122342822 tmem9b,LOC107674442,LOC107750540,LOC107754675,LOC107585953,LOC107700603,LOC107593285 other upstream 1062994 3601000 ~ 3601991 (-)
LOC122342823 scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597 other upstream 1064350 3602356 ~ 3618367 (-)

Expression


Co-expression Network