ninj2 (ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271)


Basic Information

Item Value
gene id ninj2
gene name ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3099737 ~ 3117994 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU37871
ACGGAAACCCATCGTgcgtgtgtttttgtcttttctgtgGTAAACGAGGTGTTTTCGGAGCAGCACAGGGGGCTTGAATGTTTACATGGACCCTCCTCCTGTGTATGCGCACGTGTTGTGGGATGTGGCCTGCCCAGAAAAGAGGAGCAAAAAGAAAACGGAGtaacaacatttattcatttgagcGAACCCTCCTCGCCCGTTCTCATTCGCTATTGGACGTGAGAGCAGCCAATGAGTGGGTGGGGAGGTGGACTTCCTGTGGGCCAGCGACACGGGCCCCACATGTAAAATATTCCTGACCTCTCCCatggtgtttattttaaaaagaaaaaaggaaaacgcTCCCCATCATTAAGGAAAACAGTGAGCCTGTGCGTGTGGTATTTGGGCGCTCGCCCGGTCTTAGTGTTACTGCGCCGTGATTGGTGGAGAGGATTCGGTTCTTTATGCAAAACAGGCTCTTCTTATGTCACATCACATGTATGAAACATGTATGTTTGTAAGGGGGCGGGACGCTCTACAGAACACTTTGTTCTGATGCAGATAAGACGTCTGCTCGTGTGGGAGAGGGTTCGAACACATTCTTGGAGGGTCATGCGTTTGTAAACCTACATGTCTCTAACAGGTCCTGTAGACGGTGATGAGGGCACATTATGGGAACCGAGATCAAAAAGAAGACTCACGAAACACACGAAGTGAAGCAAAAGTGTTGGACCGATTTAGCAGAAAGGTTTCAAGGGCTCTGGATAGAAAAGAAATATGATATCAGTGCATTGGGGGGAACTAAAAATCgacatgtttatgtattttgctCCACGTAGGCTACATATTAGGAAGAGATTTCAGGAGATGTATTGGAAAGTATGTATGTTTAGTTTTTCataagaaaattattatatacagtatatatatatatatatatatatatatatatatAAAGATGATTATGAAAGGATATCTAGCGCCCCCAGATGGTTACTGTAAAAGTAAGTTACAGATTGAAAAAATGAATAGTGAAATGCTGCCATCTATTGATAGATATGGACAACTTAGTCcaaccaaatgtccccacaaggatagtaaaCACTGACATTTGTGACTGAAAATTATTAAAGCATGCATAAAAGGTGCAGGGcgattaaaaatattgttaggtcagtataaaaacaatagaagccTATCAAAGTCTTCACATATATAtcaaaacaaacgtgtgtgtgtgtgtgttttaatgaagtATTTGGTTGGAGTGTTTGTCCtgagcagaagaaaaagaagtattaattataaagaaatgaatatatTCAGTACTTTTGACATTCAAACGGGttcatttagcttttttccACTTGCACCGAGAACCTCTCTCTGGTTTTGAAGGATCTTATCTCACAGAGTACAGATGTTGCTGGAAACCGCTGATATTGCTTCTAAAAAACGAGAGCAGATGGCCTCTTGTTTTCCTCCACTGAAGATAGCACACCGTCGGTGGAATAAGCATGCATGAatctgtaaatataattttatacacaTAAGCTACACATCCGTATACCATAAAAGGTGCAATTAATTGTTAGTTACACAGTAGAAATGTACTTCATTTGAAATGCTTTGTCTCTTTCAGCCCGCAGAGCCTCTCAACATGAATCATTACGCCACTAAGAAGAGCGTGGCGGAGAGCATGCTGGACGTGGCGCTGCTGATGGCGAACGCCTCTCAGCTGAAAGCCGTCCTGGAGCAGGGCCCCGAGTTCAAGTACCACCTCACCGTCATCGTCCTCATCGCCGCGTCTCTCTTCTTCCAAGTGCTCGCGGGGGCCCTCTTTGTCCACATGGGTGAGAGCCACATCCATCATGCATTACGCACAAAACCTGTATGGATGCTTTACGCTCATTTCTGCCCTTCTCAGCGCGCAAAAACATCAACGATGTGGCCAATCAGAGGAAGCTGGACATGATAAACAACGTGGCCACTGTGCTGGTGTTCCTCACCGTCATCATCAACATCTTCATCACCGCTTTTGGAGTGCAGAAGACAGGTCTCTATCCTAAGCAGTAAACAGACAGGtgatacagaaaataaaaagcatctCTGAATAAGCATGCCACAATATCATAAACTCTATCTTTCATGTTGTTTGGTTTTAGGGTCCCAATAATGGCCATCCTTCAATCACGAAAAGACTTCCTTCTGGCTTCCATATTTGTTATACTGTTGAAGACACATATATTTAacgcttttttaaattatttatttctacaaaGGGCATTATATTAAAGGGTCTACAACATTCATAATGCACTGTCTAGTGATTTATATTACCTAGAGGCAAAACTATAATCAAATAACACTAATTCATCATGTAATATGTATTCTACACTTCATGCTGTACCAGATAATAAAcgtttattataaaac
>XM_043236262.1
GACAAAATCTAGTCTTTCTTCTCTTTGCAGACAGTGATTACATTGGCTATAGCGTATTTGACTGGTTTACTGTTTACAAAGGAGCGCTCAGTTTTGTTGCGACCCAGTCCGGTGGGTTGGAATGGGctggaattgaaaaaaaaagagagagaaaagaatgaataaCACACTTGTTTGCCTGGACGGCTGTCCTTGCTATGTGCCATGAATTTCTTCAAAAGCTTTTACCGACTTTCCTACTTTCCCTTTCTGAGGAACTCCGAGCGTATCTGGACTCCGATTCATCCGTTCGGCGGCAGCGACGGTCATCTGGGACTCAGCCATGCCGGCAGCAAGAGGACGTACAGATCTACAGCCCGCAGAGCCTCTCAACATGAATCATTACGCCACTAAGAAGAGCGTGGCGGAGAGCATGCTGGACGTGGCGCTGCTGATGGCGAACGCCTCTCAGCTGAAAGCCGTCCTGGAGCAGGGCCCCGAGTTCAAGTACCACCTCACCGTCATCGTCCTCATCGCCGCGTCTCTCTTCTTCCAAGTGCTCGCGGGGGCCCTCTTTGTCCACATGGCGCGCAAAAACATCAACGATGTGGCCAATCAGAGGAAGCTGGACATGATAAACAACGTGGCCACTGTGCTGGTGTTCCTCACCGTCATCATCAACATCTTCATCACCGCTTTTGGAGTGCAGAAGACAGGTCTCTATCCTAAGCAGTAAACAGACAGGGTCCCAATAATGGCCATCCTTCAATCACGAAAAGACTTCCTTCTGGCTTCCATATTTGTTATACTGTTGAAGACACATATATTTAacgcttttttaaattatttatttctacaaaGGGCATTATATTAAAGGGTCTACAACATTCATAATGCACTGTCTAGTGATTTATATTACCTAGAGGCAAAACTATAATCAAATAACACTAATTCATCATGTAATATGTATTCTACACTTCATGCTGTACCAGATAATAAAcgtttattataaaacacttaA
>XM_043236263.1
TTTACTGGATGGGGGAATCTGAGTCTAATTATACCGGCCGGGCACTTGAACAAGAAGCAGACAAAATCTAGTCTTTCTTCTCTTTGCAGACAGTGATTACATTGGCTATAGCGTATTTGACTGGTTTACTGTTTACAAAGGAGCGCTCAGTTTTGTTGCGACCCAGTCCGGTGGGTTGGAATGGGctggaattgaaaaaaaaagagagagaaaagaatgaataaCACACTTGTTTGCCTGGACGGCTGTCCTTGCTATGTGCCATGAATTTCTTCAAAAGCTTTTACCGACTTTCCTACTTTCCCTTTCTGAGGAACTCCGAGCGTATCTGGACTCCGATTCATCCGTTCGGCGGCAGCGACGGTCATCTGGGACTCAGCCATGCCGGCAGCAAGAGGACGTACAGATCTACAGCCCGCAGAGCCTCTCAACATGAATCATTACGCCACTAAGAAGAGCGTGGCGGAGAGCATGCTGGACGTGGCGCTGCTGATGGCGAACGCCTCTCAGCTGAAAGCCGTCCTGGAGCAGGGCCCCGAGTTCAAGTACCACCTCACCGTCATCGTCCTCATCGCCGCGTCTCTCTTCTTCCAAGTGCTCGCGGGGGCCCTCTTTGTCCACATGGCGCGCAAAAACATCAACGATGTGGCCAATCAGAGGAAGCTGGACATGATAAACAACGTGGCCACTGTGCTGGTGTTCCTCACCGTCATCATCAACATCTTCATCACCGCTTTTGGAGTGCAGAAGACAGGGTCCCAATAATGGCCATCCTTCAATCACGAAAAGACTTCCTTCTGGCTTCCATATTTGTTATACTGTTGAAGACACATATATTTAacgcttttttaaattatttatttctacaaaGGGCATTATATTAAAGGGTCTACAACATTCATAATGCACTGTCTAGTGATTTATATTACCTAGAGGCAAAACTATAATCAAATAACACTAATTCATCATGTAATATGTATTCTACACTTCATGCTGTACCAGATAATAAAcgtttattataaaacacttaA

Function

symbol description
ninj2 Predicted to be involved in cell adhesion. Predicted to act upstream of or within tissue regeneration. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NINJ2 (ninjurin 2).

NR:

description
PREDICTED: ninjurin-2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37871 True 2421 TUCP 0.41 2 3115508 3117988
XM_043236262.1 False 1000 mRNA 0.45 4 3099796 3117994
XM_043236263.1 False 1031 mRNA 0.45 4 3099737 3117994

Neighbor

gene id symbol gene type direction distance location
optn optn,LOC107726056,LOC107658854,LOC107656330,LOC107743880,LOC107580275 coding upstream 87633 3006873 ~ 3012104 (+)
camk1da camk1da,LOC107726013,LOC107743755,LOC107658855,LOC108428135,LOC108279878,LOC107656221 coding upstream 105238 2943924 ~ 2994499 (+)
cdc123 cdc123,LOC107658858,LOC107726014,LOC107656335 coding upstream 158140 2938072 ~ 2941597 (+)
ucmaa ucmaa,ucma,LOC107658769,LOC107581267,LOC107656340 coding upstream 172639 2923221 ~ 2927098 (+)
phyh phyh,LOC107743808 coding upstream 179494 2916161 ~ 2920243 (+)
LOC122342760 wnt5b,LOC107656325,LOC107572035,LOC107726030,LOC107658849,LOC107580320 coding downstream 193659 3311653 ~ 3381172 (+)
LOC122342820 LOC107679839,LOC107717989,LOC107699428 coding downstream 461634 3579628 ~ 3601006 (+)
LOC122343370 wnt5b,LOC107656325,LOC107580320,LOC107726030,LOC107572035 coding downstream 542623 3660617 ~ 3675293 (+)
adipor2 adipor2,LOC107658846,LOC107726009,LOC107743774,LOC107656334 coding downstream 560251 3678245 ~ 3701214 (+)
sult4a1 sult4a1,LOC107658835,LOC107592236,LOC107726066,LOC107580464 coding downstream 642590 3760584 ~ 3769843 (+)
G25455 wnk1,wnk1b,LOC107725976,LOC107658853 non-coding upstream 68845 2935162 ~ 3030892 (+)
G25456 NA non-coding upstream 74973 3017567 ~ 3024764 (+)
G25453 NA non-coding upstream 167878 2931108 ~ 2931859 (+)
LOC122343411 NA non-coding upstream 273948 2790078 ~ 2825789 (+)
LOC122343412 NA non-coding upstream 312080 2726802 ~ 2787657 (+)
G25502 LOC107573038 non-coding downstream 291007 3409001 ~ 3434462 (+)
G25504 NA non-coding downstream 302642 3420636 ~ 3429146 (+)
LOC122342808 NA non-coding downstream 321137 3439131 ~ 3439654 (+)
LOC122342809 NA non-coding downstream 322918 3440912 ~ 3441500 (+)
LOC122343393 si:dkey-234i14.9,igl4v8,LOC107687028 non-coding downstream 329064 3447058 ~ 3447574 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 1104201 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 1311641 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 1426778 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 1767894 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 1808513 1288297 ~ 1291224 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1521 3119515 ~ 3306758 (+)
G25514 NA other downstream 363635 3481629 ~ 3502094 (+)
G25551 NA other downstream 619508 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 1111635 4229629 ~ 4231092 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other downstream 1114914 4232908 ~ 4235244 (+)

Expression


Co-expression Network