G25504


Basic Information

Item Value
gene id G25504
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3420636 ~ 3429146 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU37910
ttaagtatataaaacataataaataaaataataaaacaaaataaaagaaaaaataaacaaatcacaacgtaaataaaacagattccaatataaaattgaaatgaaaataacactggttCCTTGAGTACTCAAATGAATCTTTGGTGGTATATTTTCTGTTACTCACACAATGAATTAACTGTAATTTTCGGATATATAATCGACATTCACCGTACAAAATATATCCCTTAAAGAATCCTCTTTCGGAGTAGGTTCAAACCTGTTCAAAGCTTTTGAGATTAGTTCCGTTTGTCAATCACTTATCTCAAATCCAACGACGTAGCAGTAATTCACTGTCCACAATGTCTTCTGAAATCCTTTCCTTTTGAAGAGAAAAAGGTAAATTTCCAGTTCTGGTAACTTTGGTCTCCTTTCAGATTCGATTAGGTCGGCTCGCcatcaaagaaaacatccaaCGCAAATCCACGGAAAAAACCTGACCTATTAAAATAAGTCAGcgtttcaataaaacaatttcaaataggTGTCATCTCAAAATGATCTTGCattatgataaacattttgtttcacagaatataacaataataatatttgcataaattgcttaatatattacattttctacaGGCTCACGTGTATCAGATACTGCGGCCACGTGAACTGCAACCACGTGCGATTAGCGATCAtcaatttaacaaataacagtgcaaaatacacatatacatacatttcaataaagatttaaacacttaactgtaaaaaaaaat

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU37910 True 767 lncRNA 0.31 2 3420636 3429146

Neighbor

gene id symbol gene type direction distance location
LOC122342760 wnt5b,LOC107656325,LOC107572035,LOC107726030,LOC107658849,LOC107580320 coding upstream 39464 3311653 ~ 3381172 (+)
optn optn,LOC107726056,LOC107658854,LOC107656330,LOC107743880,LOC107580275 coding upstream 408532 3006873 ~ 3012104 (+)
camk1da camk1da,LOC107726013,LOC107743755,LOC107658855,LOC108428135,LOC108279878,LOC107656221 coding upstream 426137 2943924 ~ 2994499 (+)
cdc123 cdc123,LOC107658858,LOC107726014,LOC107656335 coding upstream 479039 2938072 ~ 2941597 (+)
ucmaa ucmaa,ucma,LOC107658769,LOC107581267,LOC107656340 coding upstream 493538 2923221 ~ 2927098 (+)
LOC122342820 LOC107679839,LOC107717989,LOC107699428 coding downstream 150482 3579628 ~ 3601006 (+)
LOC122343370 wnt5b,LOC107656325,LOC107580320,LOC107726030,LOC107572035 coding downstream 231471 3660617 ~ 3675293 (+)
adipor2 adipor2,LOC107658846,LOC107726009,LOC107743774,LOC107656334 coding downstream 249099 3678245 ~ 3701214 (+)
sult4a1 sult4a1,LOC107658835,LOC107592236,LOC107726066,LOC107580464 coding downstream 331438 3760584 ~ 3769843 (+)
samm50l samm50,samm50l,LOC107725949,LOC107592232,LOC107658828,LOC107656318,LOC107580535 coding downstream 460291 3889437 ~ 3895875 (+)
G25455 wnk1,wnk1b,LOC107725976,LOC107658853 non-coding upstream 389744 2935162 ~ 3030892 (+)
G25456 NA non-coding upstream 395872 3017567 ~ 3024764 (+)
G25453 NA non-coding upstream 488777 2931108 ~ 2931859 (+)
LOC122343411 NA non-coding upstream 594847 2790078 ~ 2825789 (+)
LOC122343412 NA non-coding upstream 632979 2726802 ~ 2787657 (+)
LOC122342808 NA non-coding downstream 9985 3439131 ~ 3439654 (+)
LOC122342809 NA non-coding downstream 11766 3440912 ~ 3441500 (+)
LOC122343393 si:dkey-234i14.9,igl4v8,LOC107687028 non-coding downstream 17912 3447058 ~ 3447574 (+)
LOC122343352 NA non-coding downstream 41220 3470366 ~ 3471135 (+)
G25523 foxp2,LOC107725896 non-coding downstream 116976 3546122 ~ 3547509 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other upstream 113878 3119515 ~ 3306758 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other upstream 302642 3099737 ~ 3117994 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 1425100 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 1632540 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 1747677 1670512 ~ 1672959 (+)
G25514 NA other downstream 52483 3481629 ~ 3502094 (+)
G25551 NA other downstream 308356 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 800483 4229629 ~ 4231092 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other downstream 803762 4232908 ~ 4235244 (+)
G25958 NA other downstream 1121017 4550163 ~ 4628899 (+)

Expression


Co-expression Network