G25523 (foxp2,LOC107725896)


Basic Information

Item Value
gene id G25523
gene name foxp2,LOC107725896
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3546122 ~ 3547509 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU37933
TtggcatgcatgtgtgtgttaaagtaCCTCTCTCTCCGGTTGTTGAGGGCCGGGGACTGGCCGTTGGAGATGCCGTGATGGGTGATGGGCGGCGAAGCTTTGGGGTTGCTGGTGGAGGTAGTGGACGAGTTGTTGGTGGTGCTCAGGTCCAGGCCGCTGTGTTTTAGCCCATTATCCTCCATGGCGTGGCTACTAGTGACGTCTTTCCAAAGTTGCTGGAGTTCGGCGGGGCTCAGACCAGCTGCTGGCGGCAGAGTCTGTCCGGGGAGGGTGGGCTGTCCTGGGCCGGGGGGCAGAGAGAGGAGGCCCTGCCTCTGCATGTTGAGCaggtgctgctgctgctgcagttgCTGCATTTGCAAGAGCTGCTGCTGAAAGACCAGCTGCTGTGCTGccaactgctgctgctgctgctgttgctatagtgagagagagagagagagatagatagagcgAGTGAGCATATACACGCAAAACACTAATCACACACATGGACGAGAAAGTGTGTTCGGCTATACATGCGGCCCAAGTGAAACCTAGCCGCCTTGTTCCCGTCGCCTGTTTGCATGGATCTGTGTGTGAGATGCGGGTGGGAGGGTGTGCGAAGCCCCCTCCTTTCACCATTGATAGTTAATTGTCTTGCATTTCTAATGGTCCATTACAGCTTATGGGGCCACAGGGAGGGGGTGACGGAGGGAGGGAAGCTGAGAGAGATTTACAGCACCC

Function

symbol description
foxp2 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within response to ethanol. Predicted to be active in nucleus. Is expressed in head; heart tube; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including attention deficit hyperactivity disorder; autism spectrum disorder (multiple); communication disorder (multiple); dyslexia; and major depressive disorder. Orthologous to human FOXP2 (forkhead box P2).

NR:

description
PREDICTED: forkhead box protein P2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37933 True 726 lncRNA 0.56 2 3546122 3547509

Neighbor

gene id symbol gene type direction distance location
LOC122342760 wnt5b,LOC107656325,LOC107572035,LOC107726030,LOC107658849,LOC107580320 coding upstream 164950 3311653 ~ 3381172 (+)
optn optn,LOC107726056,LOC107658854,LOC107656330,LOC107743880,LOC107580275 coding upstream 534018 3006873 ~ 3012104 (+)
camk1da camk1da,LOC107726013,LOC107743755,LOC107658855,LOC108428135,LOC108279878,LOC107656221 coding upstream 551623 2943924 ~ 2994499 (+)
cdc123 cdc123,LOC107658858,LOC107726014,LOC107656335 coding upstream 604525 2938072 ~ 2941597 (+)
ucmaa ucmaa,ucma,LOC107658769,LOC107581267,LOC107656340 coding upstream 619024 2923221 ~ 2927098 (+)
LOC122342820 LOC107679839,LOC107717989,LOC107699428 coding downstream 32119 3579628 ~ 3601006 (+)
LOC122343370 wnt5b,LOC107656325,LOC107580320,LOC107726030,LOC107572035 coding downstream 113108 3660617 ~ 3675293 (+)
adipor2 adipor2,LOC107658846,LOC107726009,LOC107743774,LOC107656334 coding downstream 130736 3678245 ~ 3701214 (+)
sult4a1 sult4a1,LOC107658835,LOC107592236,LOC107726066,LOC107580464 coding downstream 213075 3760584 ~ 3769843 (+)
samm50l samm50,samm50l,LOC107725949,LOC107592232,LOC107658828,LOC107656318,LOC107580535 coding downstream 341928 3889437 ~ 3895875 (+)
LOC122343352 NA non-coding upstream 74987 3470366 ~ 3471135 (+)
LOC122343393 si:dkey-234i14.9,igl4v8,LOC107687028 non-coding upstream 98548 3447058 ~ 3447574 (+)
LOC122342809 NA non-coding upstream 104622 3440912 ~ 3441500 (+)
LOC122342808 NA non-coding upstream 106468 3439131 ~ 3439654 (+)
G25502 LOC107573038 non-coding upstream 111660 3409001 ~ 3434462 (+)
G25534 NA non-coding downstream 153919 3701428 ~ 3701754 (+)
G25535 NA non-coding downstream 154325 3701834 ~ 3702371 (+)
G25536 NA non-coding downstream 159350 3706859 ~ 3707064 (+)
G25537 NA non-coding downstream 161028 3708537 ~ 3708852 (+)
LOC122343347 NA non-coding downstream 259430 3806939 ~ 3807898 (+)
G25514 NA other upstream 44028 3481629 ~ 3502094 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other upstream 239364 3119515 ~ 3306758 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other upstream 428128 3099737 ~ 3117994 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 1550586 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 1758026 1784237 ~ 1788096 (+)
G25551 NA other downstream 189993 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 682120 4229629 ~ 4231092 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other downstream 685399 4232908 ~ 4235244 (+)
G25958 NA other downstream 1002654 4550163 ~ 4628899 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other downstream 1381962 4929471 ~ 4944880 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G477523 NA non-coding CI01000335 null 405053 ~ 406281 (+)