G25535


Basic Information

Item Value
gene id G25535
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3701834 ~ 3702371 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU37947
CACCGGGCCACACTATTGAattataccttttaaaaaaactaatactaATCGCAGTATTTATACTGTTTGGTCAACATGTTAAATTGCGTACAGTTGTCTTTCTCGGAACATTAAAATGGTATATTAATAGACAATTATAGCAGTTACTAGATTTCAGTCATGGGTCTTTCAAAGGGTTAAAAGAgtagttcacgcaaaaattaaaaccccatattttactcaccccgaagccgtcatagatgtatatgactttcttctttcagacgaacacagtcggAGTTTTTTAGAAAGTGTATCCTGGCTCTTTgaagcttggtaatgctcgtgGATAGCGGTCGTTATTTTCAAGCTccgtaaatcggatatatccgcGACGTACAACTAACCTATAAACGCCTTCGGttaatatctattttaaatatttctattttaaaaccatAACGTTAATAACTGCCTCGTGTTATTTTCCGCGAGGACTTCTgagttccggcttcttggctgacctttGACTCGACGTATGAGGCAACTTACGTCGTAG

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0140096 catalytic activity, acting on a protein molecular_function
GO:0017171 serine hydrolase activity molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU37947 True 538 lncRNA 0.38 1 3701834 3702371

Neighbor

gene id symbol gene type direction distance location
adipor2 adipor2,LOC107658846,LOC107726009,LOC107743774,LOC107656334 coding upstream 620 3678245 ~ 3701214 (+)
LOC122343370 wnt5b,LOC107656325,LOC107580320,LOC107726030,LOC107572035 coding upstream 26541 3660617 ~ 3675293 (+)
LOC122342820 LOC107679839,LOC107717989,LOC107699428 coding upstream 100828 3579628 ~ 3601006 (+)
LOC122342760 wnt5b,LOC107656325,LOC107572035,LOC107726030,LOC107658849,LOC107580320 coding upstream 320662 3311653 ~ 3381172 (+)
optn optn,LOC107726056,LOC107658854,LOC107656330,LOC107743880,LOC107580275 coding upstream 689730 3006873 ~ 3012104 (+)
sult4a1 sult4a1,LOC107658835,LOC107592236,LOC107726066,LOC107580464 coding downstream 58213 3760584 ~ 3769843 (+)
samm50l samm50,samm50l,LOC107725949,LOC107592232,LOC107658828,LOC107656318,LOC107580535 coding downstream 187066 3889437 ~ 3895875 (+)
aldh1l2 aldh1l2,LOC107580561,LOC107592231,LOC107743541,LOC107658818,LOC107656317 coding downstream 194706 3897077 ~ 3905931 (+)
slc41a2b slc41a2b,slc41a2,LOC107658826,LOC107726006,LOC107743571,LOC107580572,LOC107656312 coding downstream 206772 3909143 ~ 3959260 (+)
nfyba nfyb,nfyba,LOC107656315,LOC107658836,LOC107592261,LOC107581291,LOC107743639,LOC106561000 coding downstream 270704 3973075 ~ 3975787 (+)
G25534 NA non-coding upstream 80 3701428 ~ 3701754 (+)
G25523 foxp2,LOC107725896 non-coding upstream 154325 3546122 ~ 3547509 (+)
LOC122343352 NA non-coding upstream 230699 3470366 ~ 3471135 (+)
LOC122343393 si:dkey-234i14.9,igl4v8,LOC107687028 non-coding upstream 254260 3447058 ~ 3447574 (+)
LOC122342809 NA non-coding upstream 260334 3440912 ~ 3441500 (+)
G25536 NA non-coding downstream 4488 3706859 ~ 3707064 (+)
G25537 NA non-coding downstream 6166 3708537 ~ 3708852 (+)
LOC122343347 NA non-coding downstream 104568 3806939 ~ 3807898 (+)
LOC122343346 NA non-coding downstream 286312 3988683 ~ 4007148 (+)
G25823 tymp,LOC107725998,LOC107580729,LOC107743597 non-coding downstream 426552 4128923 ~ 4129250 (+)
G25514 NA other upstream 199740 3481629 ~ 3502094 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other upstream 395076 3119515 ~ 3306758 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other upstream 583840 3099737 ~ 3117994 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 1706298 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 1913738 1784237 ~ 1788096 (+)
G25551 NA other downstream 35131 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 527258 4229629 ~ 4231092 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other downstream 530537 4232908 ~ 4235244 (+)
G25958 NA other downstream 847792 4550163 ~ 4628899 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other downstream 1227100 4929471 ~ 4944880 (+)

Expression


Co-expression Network