LOC122342823 (scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597)


Basic Information

Item Value
gene id LOC122342823
gene name scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3602356 ~ 3618367 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU38194
AGCTGGGAGAATTCACCGGCTATATCGAATCTCCCAACTACCCTGGCAACTACCCGGCCAACATCGAATGCACCTGGACCATCACCCCTCCTCCCAAGCGCAGAATCCTCGTTGTGGTACCTGAGATCTACCTTCCTATTGAGGACGAGTGTGGGGACTATTTGGTCATGCGGAAGAGTTCTCTGCCCAATTCAGTGACGACTTATGAGACTTGCCAGACGTATGAGCGACCCATCGCCTTCACCTCCCGCTCCAAGAAACTCTGGATCCAGTTCCGCTCCAATGAAGGAAACAGTGGAAAAGGCTTCCAAGTGCCATATGTAACGTACGATGAGGACTATCAGGAGCTCATTGAGGACATTGTTAGGGACGGACGGTTATATGCCTCTGAGAATCATCAAGAAATCCTTAAGGACAAGAAGCTTATGAAGGCCCTGTTTGATGTCCTGGCCCATCCGCAAAACTTCTTTAACTATACTGCACAAGAGTCTAGAGAAATGTTTCCAAAATCATTCATCAGATTTCTCCGCTCCAAAGTTTTGAGATTCCTACGCCCCtgaattttgtgaaataatcttGTATGGAATAAATATTTGGCGCTCGAGACAAATTTTATATGACTGACCTGGAACAAATGTATTCCTGAATGTTCTTGGCCGCCATCATACGGATGCGGATTCAAGGCGACTTCTTGGACCTGATGAGATGAGAGCTCACAAGAAACTTTCCTAAATACGTCATTGGAATGTTTTTCTCCTGAAgaaaatgaactgtttttccAGTGATTGGATTTTAATGCTGCCTTTCTAACAATTATAACATGAACTGCCACCTTTCAAGAAAAAGATTCTTCCTGTTTCATTCCTTTATTGCCCAGAAGTGAATgtgttacaaaaacacattaattacaGCCTGAATTATAGTCAGCAAAAAAGAAGAGCAACTTGATTGCTTGTTATATATTACAGGTCATTTCATCTGccattttttgtgaaaatatgtTTGACCAGATTATTTTGAAACTTCAGAGAACTACTAAGAGGAAGTTAAAGCAGTTAAAGCTATTTTTGTGAGTTTGAATGTGTtgtacattatgtaaaaaaaaattagcatcaGCTCTCATGTTActatattgtattctttttttgcattgtagCCTTCTTCATACATGACATATATGTATTCGTCATTTGTTTCCAGTAAGAAATCGTAGATGTACACAATATTTTCAGGTACTGGTTAGACATTTATGGTCATTTGATATATTACTTATCGGTTTCTCTGCATTCACTGCTATTACATGTCCATCACCTAAACTGATTTTTGGTTTAAGAGGCTCTTGATGTAGGATTGATTACTCATTAATGACATGCagagtaaattaaatgtttatatttttatggttgTACATCTAACgtgtaaataaagaaatacactCAG
>XM_043236955.1
ATGGGAAACCCAGAGActggagaggaggagaagaagagcaGAAAGCGAGGCAACGAACACAAAGAGGTGTTTTTAAAAGAGACCTGTGCGGTGAACAACGGCGGTTGCGATCGCACCTGCAAGGACACGGCCACCGGGGTGCGCTGCAGTTGTCCGGTGGGCTTCACCCTTCAACCAGACGGCAAGACCTGCAAAGacATTGATGAGTGTGAGCTCCATAACGGTGGCTGTGACCACTACTGCAGGAACACCATTGGCAGTTTCGAATGTAACTGTCGTAAAGGCTTCAAACTGCTGACGGACGAGCGTTCGTGCCAGGATATTGACGAGTGCTTTTTCGAGAGGACGTGCGACCACACTTGTGTAAACTCACCTGGTAGTTTCCAGTGTGTTTGCAACAAGGGCTACACGCTTTATGGGCTTGCCCATTGTGGAGACATAAACGAATGTAGTTTGAACAATGGAGGATGTGAACACACCTGTGAAAACACCATGGGAGGCTTTGAGTGCCACTGTCATGCTGGTCACAAGCTGCACTGGAACAAGAAAGACTGTATCGAAGCAGAGGACTCTGCACTAGTGCCGCCACCTGCCAGGCCCACTCTTAACTGCAGTAAGCAGGGAGGGGGTGAGCTCTGCTACCTGACCTGCAAGTCGCAGGTTCATATCAGCAGTGGAGCTGAAGATTCATACACCGTGACCTGTGGCATGCCCCTGCCGTGCCACGCGGGAGGACAGTGGAAAGGGAACGGCTCACATTGTCAAGGCTCTGGAATCAAAACCATTGCTACATTTAAATCTGGACAGGGGAAGTGCAATCTGAAGCGGAGTCAGGAAAATCTTGCACAGAGCTTCAAAACCACCCTGTCAGACAAAAGAGCCACTGAGAACGTCCAGTTCAGCTTTGTTAGCCTGCACTGTGCCTCTTCAAGCAGACAGCACCGTAGTCGCCACGGGCGGAAGGCCGGCGAGGAGGAAGGGTCCTCCATCACTGCCCAGTTTGAGCTGGATGTGAACCTGGAGGAGGTAACAGAGGGCTGTGACCTGGCATGTGTTCGGCGGCGCTCTGAGAAGCGGCTTAGAAAGACTATACGCACTCTTCGGAAGTCCATTAACCGGGAGCAGTTTCACCTGCACTTCGCCGGATCGGAGTACGAGCTGGCTAAGAAACTCGTCCGTCCCGCGGACCCACCAGACCACTGCGGCACCGGACAGATCCTGCTCGACAAGAAATGTGTCAAATGCAGCGTTGGCACGTACTACGATGGAGAGCAGGGGAGGTGCTTTCTTTGCCCCCCTGGGACGTACCAAGATGAAGAGGGGCAGGTGTCGTGTGACGTGTGCCCGGGACCCGAGGGCAGGGGAATCCCAAGAACCCCTGGAGCACGCAACATCTCGGAGTGTGGAGgTCAGTGCCGTCCTGGTCAGTTCTCCCATGATGGTTTTGTGCCCTGTCTGTCCTGCCCACAAGGCACCTATCAGCCTGAGGTCGGCCGAACTTCCTGTTTCCCATGTGGAGGAAGCCTCACAACCAAATATGATGGTTCTGTGTCCTTCCAAGACTGTGAGACTAAAGTTCAGTGCTCACCTGGGCATTATTATAATACCAGCACCCACCGCTGTATCCGTTGCCCCATTGGAACCTATCAGATGGAGTTTGGCCAAAACTACTGCATTGCCTGCCCTGGAAACACTACTACTGATTTTGACGGATCCACAAACATTATGCAGTGCAAAAGTAAATGCAATTCACAGAAAGGAGAGCTGGGAGAATTCACCGGCTATATCGAATCTCCCAACTACCCTGGCAACTACCCGGCCAACATCGAATGCACCTGGACCATCACCCCTCCTCCCAAGCGCAGAATCCTCGTTGTGGTACCTGAGATCTACCTTCCTATTGAGGACGAGTGTGGGGACTATTTGGTCATGCGGAAGAGTTCTCTGCCCAATTCAGTGACGACTTATGAGACTTGCCAGACGTATGAGCGACCCATCGCCTTCACCTCCCGCTCCAAGAAACTCTGGATCCAGTTCCGCTCCAATGAAGGAAACAGTGGAAAAGGCTTCCAAGTGCCATATGTAACGTACGATGAGGACTATCAGGAGCTCATTGAGGACATTGTTAGGGACGGACGGTTATATGCCTCTGAGAATCATCAAGAAATCCTTAAGGACAAGAAGCTTATGAAGGCCCTGTTTGATGTCCTGGCCCATCCGCAAAACTTCTTTAACTATACTGCACAAGAGTCTAGAGAAATGTTTCCAAAATCATTCATCAGATTTCTCCGCTCCAAAGTTTTGAGATTCCTACGCCCCtgaattttgtgaaataatcttGTATGGAATAAATATTTGGCGCTCGAGACAAATTTTATATGACTGACCTGGAACAAATGTATTCCTGAATGTTCTTGGCCGCCATCATACGGATGCGGATTCAAGGCGACTTCTTGGACCTGATGAGATGAGAGCTCACAAGAAACTTTCCTAAATACGTCATTGGAATGTTTTTCTCCTGAAgaaaatgaactgtttttccAGTGATTGGATTTTAATGCTGCCTTTCTAACAATTATAACATGAACTGCCACCTTTCAAGAAAAAGATTCTTCCTGTTTCATTCCTTTATTGCCCAGAAGTGAATgtgttacaaaaacacattaattacaGCCTGAATTATAGTCAGCAAAAAAGAAGAGCAACTTGATTGCTTGTTATATATTACAGGTCATTTCATCTGccattttttgtgaaaatatgtTTGACCAGATTATTTTGAAACTTCAGAGAACTACTAAGAGGAAGTTAAAGCAGTTAAAGCTATTTTTGTGAGTTTGAATGTGTtgtacattatgtaaaaaaaaattagcatcaGCTCTCATGTTActatattgtattctttttttgcattgtagCCTTCTTCATACATGACATATATGTATTCGTCATTTGTTTCCAGTAAGAAATCGTAGATGTACACAATATTTTCAGGTACTGGTTAGACATTTATGGTCATTTGATATATTACTTATCGGTTTCTCTGCATTCACTGCTATTACATGTCCATCACCTAAACTGATTTTTGGTTTAAGAGGCTCTTGATGTAGGATTGATTACTCATTAATGACATGCagagtaaattaaatgtttatatttttatggttgTACATCTAACgtgtaaataaagaaatacactCAGAA

Function

symbol description
scube2 Predicted to enable calcium ion binding activity. Acts upstream of or within several processes, including muscle cell fate specification; negative regulation of BMP signaling pathway; and somitogenesis. Located in cell surface; extracellular region; and secretory granule. Is expressed in several structures, including central nervous system; midbrain hindbrain boundary neural rod; midbrain neural rod; neural keel; and trunk. Orthologous to human SCUBE2 (signal peptide, CUB domain and EGF like domain containing 2).

NR:

description
PREDICTED: signal peptide, CUB and EGF-like domain-containing protein 2

GO:

id name namespace
GO:0042694 muscle cell fate specification biological_process
GO:0048747 muscle fiber development biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0001756 somitogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0008015 blood circulation biological_process
GO:0030141 secretory granule cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38194 False 1440 TUCP 0.39 4 3602358 3604270
XM_043236955.1 True 3204 mRNA 0.47 17 3602356 3618367

Neighbor

gene id symbol gene type direction distance location
LOC122342818 NA coding downstream 69607 3531214 ~ 3532749 (-)
LOC122342399 LOC107584032,LOC107579834,LOC107656234,LOC107711464,LOC107725908 coding downstream 71215 3528035 ~ 3531141 (-)
LOC122342400 NA coding downstream 76043 3521694 ~ 3526313 (-)
LOC122342398 LOC107584038,LOC107725905,LOC107658738 coding downstream 81428 3518689 ~ 3520928 (-)
LOC122342755 LOC107676321,LOC107716109,LOC107709941,LOC107655767 coding downstream 200015 3400380 ~ 3402341 (-)
LOC122343407 NA coding upstream 94248 3712615 ~ 3721125 (-)
ttll12 ttll12,LOC107581273 coding upstream 106809 3725176 ~ 3751393 (-)
pnpla3 pnpla3,LOC107726050,LOC107743702,LOC107656255,LOC107592239,LOC107580453,LOC108428138,LOC107658728 coding upstream 134000 3752367 ~ 3759739 (-)
mpped1 mpped1,LOC107726058,LOC107658834,LOC107592234,LOC107656320 coding upstream 175572 3793939 ~ 3825403 (-)
scube1 scube1,LOC107726032,LOC107592233,LOC107580481 coding upstream 207657 3826024 ~ 3888154 (-)
LOC122342503 NA non-coding downstream 157465 3442422 ~ 3444891 (-)
LOC122342757 NA non-coding downstream 184439 3416587 ~ 3417917 (-)
LOC122342758 NA non-coding downstream 198854 3402824 ~ 3403502 (-)
LOC122342458 NA non-coding downstream 482806 3117479 ~ 3119550 (-)
LOC122342459 NA non-coding downstream 485059 3116404 ~ 3117297 (-)
G25706 NA non-coding upstream 28696 3647063 ~ 3701306 (-)
G25731 NA non-coding upstream 89222 3707589 ~ 3707894 (-)
G25732 NA non-coding upstream 91657 3710024 ~ 3741805 (-)
G25739 NA non-coding upstream 151754 3770121 ~ 3770329 (-)
LOC122342502 NA non-coding upstream 157073 3775440 ~ 3785720 (-)
LOC122342822 tmem9b,LOC107674442,LOC107750540,LOC107754675,LOC107585953,LOC107700603,LOC107593285 other downstream 365 3601000 ~ 3601991 (-)
LOC122342819 foxp2,foxp4,LOC107725896,LOC107728618,LOC107656011,LOC107675840 other downstream 25233 3534662 ~ 3577123 (-)
LOC122342805 NA other downstream 580844 3019092 ~ 3021512 (-)
ccdc3a ccdc3,ccdc3a,LOC107725961,LOC107658768,LOC107580337,LOC107744050 other downstream 590142 2999882 ~ 3012214 (-)
LOC122342907 NA other downstream 1129288 2472284 ~ 2473068 (-)
shank3b shank3b,LOC107725995,LOC107592218,LOC107656300,LOC107580703,LOC107743477 other upstream 515610 4133977 ~ 4161828 (-)
G25880 LOC107658814,LOC107726023,LOC107592209 other upstream 646559 4264926 ~ 4267495 (-)
LOC122343492 LOC107743325,LOC107580925,LOC107658806,LOC107656283,LOC100330186,LOC107744995 other upstream 1112857 4731224 ~ 4757827 (-)
LOC122343483 LOC107571041,LOC107724548,LOC107658713,LOC107704613,LOC107739149,LOC107589471 other upstream 1466723 5085090 ~ 5094640 (-)
G26405 tnnt2c,LOC107560724,LOC107655611,LOC107725585 other upstream 2100645 5719012 ~ 5720250 (-)

Expression


Co-expression Network