G25823 (tymp,LOC107725998,LOC107580729,LOC107743597)


Basic Information

Item Value
gene id G25823
gene name tymp,LOC107725998,LOC107580729,LOC107743597
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4128923 ~ 4129250 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU38355
CGTGCGATCTGTTTATAATCATGCCTGTGCTGTTAgtgttatgtaaaataattaacatatttgATTTTCAAACAAGAACATGGGACATAATTACCATCATCTAGAACCTCGAGCTCTGTCTGATGCTCTGCACGCTTCATGTGCTCAAAGTAGTCGGCCTCGTTTAAACACAGGGAATGCGCAACATCTGCAGACACACCCTGAGCGACCAGCATCGCCTCAAACTTTTTCAGGGCTTCTCCGTTTTCCAGTTTGACCGCGATTTCAGTTTTCCCGCTCTCTAGAGTACCAGAGTGGCCACACATCCACAACAGATACCCACCTAAAC

Function

symbol description
tymp Predicted to enable 1,4-alpha-oligoglucan phosphorylase activity. Predicted to act upstream of or within pyrimidine nucleobase metabolic process. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma; mitochondrial DNA depletion syndrome 1; mitochondrial encephalomyopathy; pancreatic cancer; and transitional cell carcinoma. Orthologous to human TYMP (thymidine phosphorylase).

NR:

description
PREDICTED: thymidine phosphorylase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38355 True 328 lncRNA 0.45 1 4128923 4129250

Neighbor

gene id symbol gene type direction distance location
lsm8 lsm8,LOC107592220,LOC107580766 coding upstream 2116 4125348 ~ 4126807 (+)
kitlgb LOC107725965,LOC107580747,LOC107656304,LOC107658725 coding upstream 7616 4115466 ~ 4121307 (+)
lmf2b LOC107658822,LOC107592223,LOC107656307,LOC107580684,LOC107743574,LOC107725886 coding upstream 15202 4102778 ~ 4113721 (+)
ovch1 LOC107658825,LOC107592259,LOC107736419,LOC107743570 coding upstream 26743 4098063 ~ 4102180 (+)
tmtc1 tmtc1,LOC107725887,LOC107656308,LOC107592224,LOC107580673,LOC107658819,LOC102198433 coding upstream 31652 4063857 ~ 4097271 (+)
hspa14 hspa14,LOC107658827,LOC107592213,LOC107580804,LOC107656298 coding downstream 35487 4164737 ~ 4170689 (+)
meig1 meig1,LOC107592215,LOC107725971,LOC107581293,LOC107658840,LOC107744135 coding downstream 46175 4175425 ~ 4176610 (+)
tmem243b tmem243b,tmem243,LOC107592214,LOC107744120,LOC107580823,LOC107656297 coding downstream 47748 4176998 ~ 4180317 (+)
tspan12 tspan12,LOC107592202,LOC107658802,LOC107656244,LOC107565667,LOC107744106 coding downstream 285895 4415145 ~ 4429395 (+)
adm2a LOC107592207,LOC107743397,LOC107726065,LOC107580886,LOC107656286 coding downstream 687798 4817048 ~ 4827652 (+)
LOC122343346 NA non-coding upstream 121775 3988683 ~ 4007148 (+)
LOC122343347 NA non-coding upstream 321025 3806939 ~ 3807898 (+)
G25537 NA non-coding upstream 420071 3708537 ~ 3708852 (+)
G25536 NA non-coding upstream 421859 3706859 ~ 3707064 (+)
G25535 NA non-coding upstream 426552 3701834 ~ 3702371 (+)
G25824 NA non-coding downstream 89 4129339 ~ 4129628 (+)
G25825 NA non-coding downstream 894 4130144 ~ 4130422 (+)
G25827 NA non-coding downstream 2858 4132108 ~ 4132552 (+)
LOC122342475 NA non-coding downstream 95333 4224583 ~ 4227231 (+)
G25846 NA non-coding downstream 123699 4252949 ~ 4253279 (+)
G25551 NA other upstream 390329 3737502 ~ 3738594 (+)
G25514 NA other upstream 626829 3481629 ~ 3502094 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other upstream 822165 3119515 ~ 3306758 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other upstream 1010929 3099737 ~ 3117994 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 2133387 1994240 ~ 1995536 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 100379 4229629 ~ 4231092 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other downstream 103658 4232908 ~ 4235244 (+)
G25958 NA other downstream 420913 4550163 ~ 4628899 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other downstream 800221 4929471 ~ 4944880 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other downstream 1225082 5354332 ~ 5397886 (+)

Expression


Co-expression Network