G25853 (LOC107725886,LOC107592223,LOC107658822)


Basic Information

Item Value
gene id G25853
gene name LOC107725886,LOC107592223,LOC107658822
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4102730 ~ 4106259 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU38397
CATTATAGAGTGAGAGGTAGAGGACCCGCAGGCAGAAGTAGATCAGACTGTCTCTCAGGGGCTCCAGCAGCACAGCACACAGGGCCAGCGCCACTCCGACCAGGCATGTGAGCTCCAGGACCTGCTGGGGTGACAGACCCAGAGATGGCCCCAGACCAAGAAGGGACTCCTGCTCCAGAAGGGGCCGCTGAACTTTTGGCATCTGCAGGCGCACAGGGAGAATACCATCGTCTCCATACAAACCTGTCCTGGTATTTGAACGTAGATGGATGAAAAAGCACACACGTAAACAAGCGCAATGCTCCACAAGAACCATTGTCTGGGCGTTTTTACTTCCCCCATCTTGGCGGCTCGCTGGAGAGATGAGGTGTCACTTGTTTCGGGTGACTCGAGCGCGGATGCTCATTGGAAAAATGAAGAGGAATCGGAGGGGTGGAGTTAGTGATGATGGGAAGTCCGAA

Function

NR:

description
PREDICTED: lipase maturation factor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38397 True 461 lncRNA 0.55 2 4102730 4106259

Neighbor

gene id symbol gene type direction distance location
kics2 si:ch211-125a15.1,LOC107592225,LOC107658829,LOC107726025,LOC107743608,LOC107580661,LOC107656252 coding downstream 56439 4040892 ~ 4046291 (-)
avpr1ab avpr1ab,LOC107725953,LOC107658830,LOC107592260,LOC107744016,LOC107581276 coding downstream 114065 3985447 ~ 3988665 (-)
hcfc2 hcfc2,LOC107658821,LOC107592226,LOC107743554,LOC107656316 coding downstream 120902 3976307 ~ 3981828 (-)
chst11 chst11,LOC107592229,LOC107580584,LOC107743617,LOC107656313 coding downstream 132268 3931828 ~ 3970462 (-)
nopchap1 LOC107592230,LOC107581290,LOC107726008 coding downstream 194019 3906486 ~ 3908711 (-)
si:ch73-139j3.4 LOC107658832,LOC107725999,LOC107592219,LOC107580782 coding upstream 15183 4121442 ~ 4124829 (-)
LOC122343333 tymp,LOC107725998,LOC107580729,LOC107743597 coding upstream 21881 4128140 ~ 4132867 (-)
cdnf cdnf,LOC107726000,LOC107744152,LOC107592258,LOC107658837,LOC107656217,LOC107581044 coding upstream 56180 4162439 ~ 4164736 (-)
dclre1c dclre1c,LOC107725954,LOC107581292,LOC106595997 coding upstream 64422 4170681 ~ 4175192 (-)
tspan9b LOC107658833,LOC107725884,LOC107656293,LOC107580843,LOC108428166 coding upstream 131526 4237785 ~ 4246176 (-)
LOC122342502 NA non-coding downstream 317010 3775440 ~ 3785720 (-)
G25739 NA non-coding downstream 332401 3770121 ~ 3770329 (-)
G25732 NA non-coding downstream 360925 3710024 ~ 3741805 (-)
G25731 NA non-coding downstream 394836 3707589 ~ 3707894 (-)
G25706 NA non-coding downstream 401424 3647063 ~ 3701306 (-)
G25871 NA non-coding upstream 69995 4176254 ~ 4176625 (-)
LOC122342390 NA non-coding upstream 80708 4186967 ~ 4188728 (-)
LOC122342421 NA non-coding upstream 87300 4193559 ~ 4195145 (-)
LOC122342441 NA non-coding upstream 90586 4196845 ~ 4198357 (-)
LOC122342416 NA non-coding upstream 93546 4199805 ~ 4201576 (-)
LOC122342823 scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597 other downstream 484363 3602356 ~ 3618367 (-)
LOC122342822 tmem9b,LOC107674442,LOC107750540,LOC107754675,LOC107585953,LOC107700603,LOC107593285 other downstream 500739 3601000 ~ 3601991 (-)
LOC122342819 foxp2,foxp4,LOC107725896,LOC107728618,LOC107656011,LOC107675840 other downstream 525607 3534662 ~ 3577123 (-)
LOC122342805 NA other downstream 1081218 3019092 ~ 3021512 (-)
ccdc3a ccdc3,ccdc3a,LOC107725961,LOC107658768,LOC107580337,LOC107744050 other downstream 1090516 2999882 ~ 3012214 (-)
shank3b shank3b,LOC107725995,LOC107592218,LOC107656300,LOC107580703,LOC107743477 other upstream 27718 4133977 ~ 4161828 (-)
G25880 LOC107658814,LOC107726023,LOC107592209 other upstream 158667 4264926 ~ 4267495 (-)
LOC122343492 LOC107743325,LOC107580925,LOC107658806,LOC107656283,LOC100330186,LOC107744995 other upstream 624965 4731224 ~ 4757827 (-)
LOC122343483 LOC107571041,LOC107724548,LOC107658713,LOC107704613,LOC107739149,LOC107589471 other upstream 978831 5085090 ~ 5094640 (-)
G26405 tnnt2c,LOC107560724,LOC107655611,LOC107725585 other upstream 1612753 5719012 ~ 5720250 (-)

Expression


Co-expression Network