G25981 (flncb,LOC107592205)


Basic Information

Item Value
gene id G25981
gene name flncb,LOC107592205
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4689375 ~ 4690783 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU38575
ctgaTTGTCGGCCCTGGGTGCTGCTGAAGGGTCCCCGGCTCTCCCTGCCCAGGAATCCACCGAAAACGTCCCTAAAAGGGTCACCCCCCACCTGGGTGCTCTCTTCCACCCGCACCTCCCGTTTGGTCTCGCCAGCGCGGGTCTTGCTGATCTCGGTGCGTTCGGTTCGGGTGTAGGTGTGACTGCTGCGGGTGAAGGTTCGGGTGAGCCGCTCTTGGGCCGACACCATCTGAAACCAGTTCCCTACAGACGTGGAACCCTGGAATCTTAAGGTTGAGGTCACAAGTGCTGCCCACCGTGGCGATAGAAGGCGCCTGCCGCTTTCTGGTGATGCTCTCCTTCATTCTTCCCTCGCCCAGAACCTTCACTGTAAATGGACTTCCTG

Function

symbol description
flncb Predicted to enable actin binding activity. Acts upstream of or within several processes, including locomotory behavior; muscle cell cellular homeostasis; and organelle assembly. Is expressed in several structures, including adaxial cell; optic vesicle; primitive heart tube; retina; and skeletal muscle cell. Used to study autosomal dominant polycystic kidney disease and dilated cardiomyopathy. Human ortholog(s) of this gene implicated in distal muscular dystrophy 4; hypertrophic cardiomyopathy 26; and myofibrillar myopathy 5. Orthologous to human FLNC (filamin C).

NR:

description
PREDICTED: filamin-C-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38575 True 385 lncRNA 0.60 2 4689375 4690783

Neighbor

gene id symbol gene type direction distance location
tspan12 tspan12,LOC107592202,LOC107658802,LOC107656244,LOC107565667,LOC107744106 coding upstream 259980 4415145 ~ 4429395 (+)
tmem243b tmem243b,tmem243,LOC107592214,LOC107744120,LOC107580823,LOC107656297 coding upstream 509058 4176998 ~ 4180317 (+)
meig1 meig1,LOC107592215,LOC107725971,LOC107581293,LOC107658840,LOC107744135 coding upstream 512765 4175425 ~ 4176610 (+)
hspa14 hspa14,LOC107658827,LOC107592213,LOC107580804,LOC107656298 coding upstream 518686 4164737 ~ 4170689 (+)
lsm8 lsm8,LOC107592220,LOC107580766 coding upstream 562568 4125348 ~ 4126807 (+)
adm2a LOC107592207,LOC107743397,LOC107726065,LOC107580886,LOC107656286 coding downstream 126265 4817048 ~ 4827652 (+)
fbxo18 LOC107743400,LOC107658809,LOC107656287,LOC107581284 coding downstream 141627 4832410 ~ 4840605 (+)
glt8d2 glt8d2 coding downstream 150910 4841693 ~ 4847744 (+)
ttc41 LOC107656216,LOC107743954,LOC107581281 coding downstream 163282 4854065 ~ 4861148 (+)
parp12b parp12b,LOC107726044,LOC107592257,LOC107743438,LOC107658812,LOC107656291,LOC107581297 coding downstream 170545 4861328 ~ 4867182 (+)
G25941 NA non-coding upstream 253738 4432605 ~ 4435637 (+)
G25940 NA non-coding upstream 257417 4431623 ~ 4431958 (+)
G25939 NA non-coding upstream 258287 4430778 ~ 4431088 (+)
G25927 NA non-coding upstream 306869 4382175 ~ 4382506 (+)
G25889 NA non-coding upstream 366075 4322906 ~ 4323300 (+)
G25976 LOC107743325,LOC107658806,LOC107580925 non-coding downstream 40054 4730837 ~ 4743603 (+)
G26008 NA non-coding downstream 75081 4765864 ~ 4767821 (+)
G26043 NA non-coding downstream 290426 4981209 ~ 4994260 (+)
LOC122343429 NA non-coding downstream 292438 4983221 ~ 4985211 (+)
LOC122342533 NA non-coding downstream 295396 4986179 ~ 4988188 (+)
G25958 NA other upstream 60476 4550163 ~ 4628899 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other upstream 454131 4232908 ~ 4235244 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other upstream 458283 4229629 ~ 4231092 (+)
G25551 NA other upstream 950781 3737502 ~ 3738594 (+)
G25514 NA other upstream 1187281 3481629 ~ 3502094 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other downstream 238688 4929471 ~ 4944880 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other downstream 663549 5354332 ~ 5397886 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other downstream 1091161 5781944 ~ 5862313 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other downstream 1171824 5862607 ~ 5898827 (+)
vhll NA other downstream 1697760 6388543 ~ 6390927 (+)

Expression


Co-expression Network