LOC122343397 (LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166)


Basic Information

Item Value
gene id LOC122343397
gene name LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4929471 ~ 4944880 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU38659
CGCCTCTCCATCTTTCCTGCTACACTGTTTCCGTTCGTGGGAAAACTTACTGCCATCCCGATTTCTTCGAGCTccggaacttttttttttggactacCATGAAATCAGACGTCTGCTCGCCGATAGTTTGCATGCGTTTTACGTCCACGGGCCACAGTTAAATCAGTCTTTACCCCCATACAAACAAACGCAAACGAAAGTGGGGAGATTTCCTcgtaaagaaaaagaaagcaagtcgGAAATCGCGAGTTGTGCTTCCAACGAGAGTTCGAGAAGCTGAAGATGGCTCGTGGATGCCTGTGCTGTGTGAAATACATGATGTTCCTCTTCAACCTGCTGTTCTGGTTGTCGGGCTGCGGGTTGTTAGGTGTGGGAATATGGCTGTCCGTTTCTCAGGGCAGTTTTGCCACCTTCTCCCCCTCCTTCCCCTCCCTCTCAGCCGCCAATCTGGTCATTACCCTGGGCTCCGTCGTCATGGTAACGGGCTTTCTTGGTTGCCTCGGTGCCATCAAGGAGAACAAGTGCCTGTTGCTGAGTttcttCATTGTTCTGTTGATTATTCTGCTGGCAGAGCTGATTTTGCTCATCCTTTTCTTCGTGTACACGGACAAGGTGAGCGAGAACGCTAAGCAGGATCTGAAAGACGGCCTGAGGCTCTACAACACGGACAATAACATCGG
>TU38663
aacGAATGAAGGTAGGAGGATGCGGAGAGAGGGACAGAGCACTAGTTGGGATGGGAAGAGCCGGGAGAGGAGATCTCTAATAATAGCACTGCAGGGAAGCAAGAGCGTGTGGAGAAAAAAGTGGTACATGCAGCAAAGCGAATCATGCCAGCGCAGAGCAATGAAAGAGTGCGATGGAGCGAGAGCGGGGAAAGTTGAAAGCACATGCTCTGCTTTCCTGCATGCACAATAGGAACAGCGCAAAGGGCGAAAAGACAAATAGGAAGCACCAGGAGAAAGACGTTCTCAGTGCAAAGGAATTGCAACCTCGAGAAACCTGAGATCTGTGTCCTCTGAAgctcttgtgtttttgtgagcaCGGCGGTTTGTCAAATCTTTTCAAATGGCAACTTTGGACACGTTTGTTAAGTTGCAgcttgtgtgagtgtgtgtgtgtaaaacatgCCCTCCGCTCGGCCTTCATCCGATGATGCAGAGGTGTGAGAGCCACGAATCCGAGGTCCAGCGGAGCCCTTCATTGGACAGCGCAGAATCAGAATTCACCCGGGCGGCCCATCGGGGTCACCGCCTGGCCGTGGGGGCCTTCTACGGCTCCCGGGGGTCAAATGTCAAAGATCAAGCGGCACAGAGTGACCGTACCGTGGTCGCCGTCCCACCTGGAGGGAAGCCTCAGGATAAGCGGGTGTCTGCCGGTGGGAAGTACGTTGTGTTTTACTTGGACTTGTCGTTTGTGTTGCTCCTAGAGTTCGAGAAGCTGAAGATGGCTCGTGGATGCCTGTGCTGTGTGAAATACATGATGTTCCTCTTCAACCTGCTGTTCTGGTTGTCGGGCTGCGGGTTGTTAGGTGTGGGAATATGGCTGTCCGTTTCTCAGGGCAGTTTTGCCACCTTCTCCCCCTCCTTCCCCTCCCTCTCAGCCGCCAATCTGGTCATTACCCTGGGCTCCGTCGTCATGGTAACGGGCTTTCTTGGTTGCCTCGGTGCCATCAAGGAGAACAAGTGCCTGTTGCTGAGTttcttCATTGTTCTGTTGATTATTCTGCTGGCAGAGCTGATTTTGCTCATCCTTTTCTTCGTGTACACGGACAAGGTGAGCGAGAACGCTAAGCAGGATCTGAAAGACGGCCTGAGGCTCTACAACACGGACAATAACATCGG
>XM_043237834.1
AGGATGCGGAGAGAGGGACAGAGCACTAGTTGGGATGGGAAGAGCCGGGAGAGGAGATCTCTAATAATAGCACTGCAGGGAAGCAAGAGCGTGTGGAGAAAAAAGTGGTACATGCAGCAAAGCGAATCATGCCAGCGCAGAGCAATGAAAGAGTGCGATGGAGCGAGAGCGGGGAAAGTTGAAAGCACATGCTCTGCTTTCCTGCATGCACAATAGGAACAGCGCAAAGGGCGAAAAGACAAATAGGAAGCACCAGGAGAAAGACGTTCTCAGTGCAAAGGAATTGCAACCTCGAGAAACCTGAGATCTGTGTCCTCTGAAgctcttgtgtttttgtgagcaCGGCGGTTTGTCAAATCTTTTCAAATGGCAACTTTGGACACGTTTGTTAAGTTGCAgcttgtgtgagtgtgtgtgtgtaaaacatgCCCTCCGCTCGGCCTTCATCCGATGATGCAGAGGTGTGAGAGCCACGAATCCGAGGTCCAGCGGAGCCCTTCATTGGACAGCGCAGAATCAGAATTCACCCGGGCGGCCCATCGGGGTCACCGCCTGGCCGTGGGGGCCTTCTACGGCTCCCGGGGGTCAAATGTCAAAGATCAAGCGGCACAGAGTGACCGTACCGTGGTCGCCGTCCCACCTGGAGGGAAGCCTCAGGATAAGCGGGTGTCTGCCGGTGGGAAGTACGTTGTGTTTTACTTGGACTTGTCGTTTGTGTTGCTCCTAGAGTTCGAGAAGCTGAAGATGGCTCGTGGATGCCTGTGCTGTGTGAAATACATGATGTTCCTCTTCAACCTGCTGTTCTGGTTGTCGGGCTGCGGGTTGTTAGGTGTGGGAATATGGCTGTCCGTTTCTCAGGGCAGTTTTGCCACCTTCTCCCCCTCCTTCCCCTCCCTCTCAGCCGCCAATCTGGTCATTACCCTGGGCTCCGTCGTCATGGTAACGGGCTTTCTTGGTTGCCTCGGTGCCATCAAGGAGAACAAGTGCCTGTTGCTGAGTttcttCATTGTTCTGTTGATTATTCTGCTGGCAGAGCTGATTTTGCTCATCCTTTTCTTCGTGTACACGGACAAGGTGAGCGAGAACGCTAAGCAGGATCTGAAAGACGGCCTGAGGCTCTACAACACGGACAATAACATCGGTCTCCATAACGCCTGGAACATTATCCaagctgagtgtTGGCAGTGTTGTGGTGTAACTGGGCACACAGACTGGCATGATGCCCTGCAGGAGAAAACAGTTCCAGACAGATGCTGCCAGGAACATTACAGAGAGTGCGGTCGCAACACTACTAATGTTTTCTGGTCACAGGGCTGCTATGAGAAGGTGGAAGAATGGCTAAACGATAACAAACATTTGCTCGGGACCATCGCAATGTGTGTGCTGGTCTTACAGCTGCTTGGGATGGCATTCTCCATGACCTTGTACCAGCAGATCCACAGGGCGGGAAAAAAGTATGATGCCTAGAGGAAACCCAGTGTTACACGATAAAAACTCTCTGAACACCTTATGTATTATTTCCAGCCCAGCTTCATGCCATCACAAACTATTACCAGTGGATAtgaagctgtattttttttttctctgctcgAGTCTATCAGatttaattaaacagaacaGACTGTAGATATTTTTGCTCGGCTGCTGAGTGGCAATTTTTTTTGGCCTGAGGTTTAACAGCAACTGTAAGATGAAAACTAATGAAGGGAATGCATTGTAAGAAGCAATTACGGTTTTTTGCAGCTGTTAAGCCAAGCGGTATTGGAAGTAGTCCGTTAGCGTATGAACTTTATAAATTTGCCCACATGATGTAAAATCGGATTTTGAAGATTTGCAACGCTCGTAAAAGGATACATTCATTATTTCTGTATTGGACACTTGTGTAGATGTAGATGCAGTTCCCTTTGCTGATGTAATATATCAATGGCATGctgtatatatttcacattcacataaatgtactgtacaatTGAACACAAACAATCCTTTATCTGATGACTTAAGTGTTAGGGAGAGTGGGGTAAGATGTGCCACCCCCGtagtctattttttttattcttcagatttatagattttcaaaaaaggatctcatagtttttattacatgatttattacattattatctttttattataattttatgtatttta

Function

NR:

description
PREDICTED: tetraspanin-9 isoform X1

GO: NA

KEGG:

id description
K17350 TSPAN9; tetraspanin-9

RNA

RNA id representative length rna type GC content exon number start site end site
TU38659 False 680 TUCP 0.50 5 4929471 4942735
TU38663 False 1158 TUCP 0.53 4 4935929 4942735
XM_043237834.1 True 2151 mRNA 0.46 7 4935945 4944880

Neighbor

gene id symbol gene type direction distance location
LOC122343293 LOC107658814,LOC107726023,LOC107592209,LOC107656292 coding upstream 769 4894882 ~ 4928702 (+)
LOC122343294 svopl,LOC107725968,LOC107658766,LOC107744112,LOC107656247 coding upstream 34736 4889423 ~ 4894735 (+)
si:dkeyp-27e10.3 si:dkeyp-27e10.3,LOC107726043,LOC107743425,LOC107656289,LOC107580867,LOC107592246 coding upstream 40858 4868022 ~ 4888613 (+)
parp12b parp12b,LOC107726044,LOC107592257,LOC107743438,LOC107658812,LOC107656291,LOC107581297 coding upstream 62289 4861328 ~ 4867182 (+)
ttc41 LOC107656216,LOC107743954,LOC107581281 coding upstream 68323 4854065 ~ 4861148 (+)
dmtf1 dmtf1,LOC107658823,LOC107726036,LOC107743449,LOC107656295,LOC107580832 coding downstream 13796 4958676 ~ 4965197 (+)
syt10 syt10,LOC107744086,LOC107658793,LOC107656242,LOC107745011,LOC107565666,LOC107592193 coding downstream 108910 5053790 ~ 5068865 (+)
ccdc59 LOC107548114,LOC107739147,LOC107656276,LOC107745010 coding downstream 225870 5170750 ~ 5172410 (+)
cracr2ab cracr2ab,LOC107690648,LOC107742178,LOC107560738 coding downstream 271579 5216459 ~ 5224944 (+)
tspan11 tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254 coding downstream 294523 5239403 ~ 5254016 (+)
G26008 NA non-coding upstream 161650 4765864 ~ 4767821 (+)
G25976 LOC107743325,LOC107658806,LOC107580925 non-coding upstream 185868 4730837 ~ 4743603 (+)
G25981 flncb,LOC107592205 non-coding upstream 238688 4689375 ~ 4690783 (+)
G25941 NA non-coding upstream 493834 4432605 ~ 4435637 (+)
G25940 NA non-coding upstream 497513 4431623 ~ 4431958 (+)
G26043 NA non-coding downstream 36329 4981209 ~ 4994260 (+)
LOC122343429 NA non-coding downstream 38341 4983221 ~ 4985211 (+)
LOC122342533 NA non-coding downstream 41299 4986179 ~ 4988188 (+)
LOC122342534 NA non-coding downstream 44287 4989167 ~ 4991312 (+)
LOC122343284 NA non-coding downstream 47194 4992074 ~ 4994254 (+)
G25958 NA other upstream 300572 4550163 ~ 4628899 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other upstream 694227 4232908 ~ 4235244 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other upstream 698379 4229629 ~ 4231092 (+)
G25551 NA other upstream 1190877 3737502 ~ 3738594 (+)
G25514 NA other upstream 1427377 3481629 ~ 3502094 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other downstream 409452 5354332 ~ 5397886 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other downstream 837064 5781944 ~ 5862313 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other downstream 917727 5862607 ~ 5898827 (+)
vhll NA other downstream 1443663 6388543 ~ 6390927 (+)
G26692 NA other downstream 2243060 7187940 ~ 7227437 (+)

Expression


Co-expression Network