LOC122343358


Basic Information

Item Value
gene id LOC122343358
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5487063 ~ 5519852 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU39023
GCGAGGGAGGAggtagagagagaaagtgagattGGCTTGCCTGCGGACTCACTTGGCAGGAATCGCTTGACTGGATGTGTCGTATATGACTGTGCAaaacacgcgcacacgcacagaCGCAGTGAGTGAAAGTAACAGGAGAGGCTGCTCGGGATCACTCTGTTGTGGAAAGTAGAGCAGCAAGGTTCCTTCGCAGGAACTTATTGGATTCTCTCAGTTGCTGTTGGATGGCGAACAAAGTCAGGAGATGTCTGCGTGACATGCGACTGTATTGGTGGTCCCGGGCAGGTGCTTTCTGGGTCACGAGGCGGTACGAGCTTTGGAGGGATGCCTGTATGTCTTTAAATGCAGGAAGACCAGTGAAAGAGGCTGCCGGGGTAAATGAGCGATATCCAAGTTAAGcacTTCAGTTTTGGGAAGCAGCCTTGGCCCTGGGCCCTCTGTTAAGAGATCTCTGCTTTATGACTCGCTCCTGTGGTTAGCTGGAAGCCTGACCCCGTGCCGCTGACAAGCCATCAAAGCAAATACTGTGTGAACAACACGCAGGCAACTGCGGCGgagttatttttttcctttgctgtTAATCGCCGCTGAGATGGACCCTCTGACAGATGATCTGATTTAAGGCTTGTTTGCGGCGTGAGTCAGAGGAAGTGCGCTTCAGTGCAAGTGCAGtgaaataaagaacaaatgCGCACTGTAAACTCAGAGGAAGGGGGGTAACAGACATCCCTAAGGATTGCGGGGGGAGCGCTGAGTTACGTGAGCCGTAGCCGACGGCTAGACGTGAGTCAGTTAAGACTCATGGTACTTATTCAATTATGCATACACTACAGTAATATAAAGGCCTATGAGACTTCCAAGAAGCTATTCCCTCATAGACAGGAATGTGTCATTTCTCGGAAAACT
>TU39068
gaaatatgcatgtTTAGCCCTGCGTTTAACGCCGCGCGCGGATGTCTTATTTAAAAACCTCTAAGCTGAGCACTTCTGTTAAAGAACAACATCACGCCCCCTGTAAGTGCGCAGTTGCCGAAGGATGTCACAGCAAACCGAGTAACCTATGTCTGCGTACATGCAACCGACCCCAGCCTTTAATATTGACGATCAACTAAATATATTGATGTCTGAAGCGCGCAGAGAAGAGAGAGG
>XR_006250757.1
gcaaaagatttattaatttgttattaattgctcacccttatgtcattccaaacctggcagattttgaacaacatgaaggtgagtaattaaagaGGTCATATGGTGCGATTTCAACTTTCCTTTCTtcctttggagtgttacaagctgttagtgcataggtaagatctattaatatattaaacataacatatttacCCACACAGATGCACCTTTTCACCTAACAATACATTTCAAATCAGACTTGATTAGTTTCCCACTTCCTCCAAAAAggcaagatttaaaaaaaaaaaaaaacggtggaCATGCATTTATTCTCATTTAATAAATCTACATTCCTCTTTATAAATCCCACCATATACATTTAACTCATTAGTACTGTGACATTATTATGAGTCTCACTTTTAAAGTGATGAATTCTGCTCTCTTCAGTCAATCCATACTTAGTCATATCCTCCGGTCTGGTATTGACTTGGCGTCCTCAGAAAGTAATATCTTGACTTTCGAGCAAGCCATACTGAAAGATGACAGCGCTCAGTGGGATGGCCATTATGTTAACGCCCCTAAATGGTGACAGATCACTGTGGCGATGAGAGCCTGACTCATCAGTTTTATGGGAGTCAGAGTGCTGTAGAAAGACTTGACCTCATAGGAGAAGAGCACTTCAGATTATGTCAAGTGCATGAAAAAGTCTCTGcaaggtatgtgtgtgtgtgtgttatttttaataacgtCGATGCTAGAGGACCTGTAAGGTGTGCTTTTGCATGAGAAAGTATGACTGACATTCTAATATTCTCTCTGATTATACAACACGGACGCCTATAAACGTCAGTGGAGTGTTAAAATTACACACCTTAGACAGAGACGGCTGCCTTGTAACCCTGAAATAGGGGGTTATATttacgtgtttgtgtgttcgtGCACAAAAAATAATTGCACTGGCGCTTGCTAAGACAAGCACAGCTATTTTTTCAAACGGTTTGTGCTATTAATGTGAATAGTAGCTAGCAATTTCcacattatgtaaaataaaacaactattttGAAGAGGGACCAGAATATCATATTAAACTTTTGACTTTTGGGACAGTAATCAATCTCTAACCACTTACAACATTCTAACATAATTGTGGCATGTTTTTATGGGAAAGcactgttaaaaatgtgaaagacaGGTGTTTGACTGCTTCTACATCGGTAATTGAAGCTCGTTTGGTCTTGTCTGTTCTGCCGAAGCCTAAATATTAGGAAGTATGACTCAGAAATATATCTCATACTTGTATAATTGTATGTCTGTATCTCTATGGTTACAGATGAATAAACATCTCAGGGCCTCAATTATTCAACAAATGAAGAGCTTGAAGGTCTGTTATCTGACTAAGTTACATAATTTGCTGGATAATGGATGCTCTTGATCTTTAGTacaggaaaatatataaatattgactTTCAGATGAGAGAGTTTTTGCGCTGTGAAGAAGGTTGTTGTGGAGATTCGCGTGTGTGTATCAAAGTTATGCTATATGTAGTCAAGGTTAGTTGGATAAGAAGAGTGTGTTTGGGCAGTTGCCAGGACACTTATGTAGTGTAGTGATACTAGTCTTGGCAAGCTTACGAATGTGAACGATGTGTCATTGATGTGTCTTCAGGGGTCACTATGGAGTCTGCACAGGTGATCCAAAAAACTTCCTCTGTCAACAGGAATGATAAATGCTTAGTGTGTGCAATGGCTCACTTGTTTACCTCGTGTGGTGAACAtcaggaatgtgtgtgtgtttgcagatgTGTGGGCGAGCGTTTACGTGATGGTACGCGTTCTGAAACCTGGTCATAATGGCATTCTGGCACTGTCCCATAACACACCTTTACTACTGATGTGCAGCAGTTGACGGCTGAGTGGTGATAGAAGAGTTTCACCGTCGATAGTTTTTGGTGAGATGACCAAATGTGGAAAAAGGAGAGCAGGATGGAGCTCAAAACAGACTTCTGATGCGTTTGTGGTTGCTGATGCCAAGATAAACACTTCAAACTATAACATGTTAGCCTCTCAACCAATCGGAATTGATTACAGGGGAACGGCACTACTTTTAGGGCGTTCACACAGCCACAACAATTTAAACTTTGAAAGTAGcagtacattttgaaaaaaaatatattaaaaaataataatgaatatttagcCCATCCCGCCAATTCTATGTTattgcctgtttagccccgcctaCCACATCACAAACATAGATAAATGACAGGAGCGGCAAACTTAGGTCTATGCAGAGACTAAACGATAAACTTTATTTGATAAACTTGTAAAAGTGCCACACCACATCAGTAAAATCTTTTTtggttcatttcattttaccGCCAGTTCGTTTACAAACAAGGCTTAATTCGACACAGGATTTTCAGAAAGATTGAAACTAAAAGACAATGCTGTGCAAAGTATATTGGATTCGATGTCTCAccacacaagggtgagtaactGCTTTTATTACATGATTACTATTGCTTTCTGTTATTACAGGTTCTTTGATACAGACTGAGTATTTATGCGTTATTACCCTAAACATACATAACTGTTAGATAAATAGGTAggtaaatagatagatagatagatagatagatagatagatagatagatgattgGCTATCTATCGTCTATCTATGTCTatcatatacaaaaaataatgactttttaatacaaaaaaaaacctccccTTTAATCATATCTTCAACAGCTATTTTACTCTAAATGGGGCATAAGGAGAAAATGTCCTTTTATGTTCAGATAGGAGTGATAATTGCAGTAAAAGCGATGGTGGATTTCTGTGGGAGGTCTTGTTGTGATGTTAGATGGTCTGAGATAACAGCGTGTCCAAGGATGAGGGTTGGTTAAGCAGCAGGAGGACAAGGAGGAAGTGGCCCATTTTGGCAGATTCCTGCAGAGAGACTTGCTAGAGGGTTGTGGGTAGTGATTGACAAATTAGGGTGAGTGAAAGTGAAGGATCAAGCGACTCAGTCACTCGTGATGGAGGATGGGATGCAGGACTGGGTGAAGGGTCAGCGGAGCAAGAGTAGAGGAGTGTacatcacacacgcacacactcttaCCCGCACATTCCTGCGAGTTGAGGGAAATGACCGTAGTATGAGTCGAGCGTCCAAGCCTGTGATCTCGTCGCAGAGCGGCGCCACTGTTGACTCCGTCTGCCCTTGTGTGAGGTCTGCCACCGGATTCCTATGTTGTGAGTGGAAGCGGCACCTGCAACAGTGACCACTTTCCTGTTACTGGATCCATTCTGTGGTGGCTGTGAGCATGTGCACTTGTGGAATTCCCCTTGAGTAACAAAAGAGTCAGAAAGAAACCGAGAGAGATTGACTGCCTGTCCTTTACAGTTattaaactttcattttcattctcagAGCTAGCTCTGCCGGTAGATATTAGCGCTCAATCTTCTGCATTccatttttagttaattaactTAAGCATGCTTTATTTTGCATTGCCAGTTTCACTGGATACCTGCGgtctaaataaatgttactgtttCCAAACCAAGCGTTACATAACAATTGGGATCTAATTATTTAGCCCTGCCCACTAGAAACATCATTGGTTAAAAATTTTGCTCCACATAAGTGTATCTGCcatgttctgattggctgggatCACAAGTTTCACTTTTAGTGTGGCTAAATTACATATCTAGGTTAGGTTGCTTTTTTATGAGAATTGTGCTTGACATAACGTTGTGAGCATTCCTGCTATGATTTCTCTGCGTGCTGGATTTCGGAAAGGCACCTTCTGATTCTGAACTACAGCTCATTAGATTTTACTGATGCAGCGGTGTTTATTCTACAACTAGTTTGGGCAAAATATTCCCTCAAGCTTTCCTGATGATTACAAGCTGCGAGTGtggtgaaaaaaagagaattttttcttaaaaacatctGTTGCGGTGACAAGTTGTTTTTGATTGAGCTCATCCATTTCCATCGGCCCTCCCTTTTCCCTCAGCAACCTCAAAGCGACGTGTCCTCAACCTCAAAACAACGTTCCTGCGTAACCAACCGCTTGTTTTCGAGGGATTCTTGCGAAACAGCACACCCCAGTGGTCGCATTAGTACTGCGGCTACGAATGAATTAGTGCCTGATGGATGACACATGAAGCATTTACTGAAAGAGAGGCTGAGAGAGGAGAGGCGAGGGAGGAggtagagagagaaagtgagattGGCTTGCCTGCGGACTCACTTGGCAGGAATCGCTTGACTGGATGTGTCGTATATGACTGTGCAaaacacgcgcacacgcacagaCGCAGTGAGTGAAAGTAACAGGAGAGGCTGCTCGGGATCACTCTGTTGTGGAAAGTAGAGCAGCAAGGTTCCTTCGCAGGAACTTATTGGATTCTCTCAGTTGCTGTTGGATGGCGAACAAAGTCAGGAGATGTCTGCGTGACATGCGACTGTATTGGTGGTCCCGGGCAGGTGCTTTCTGGGTCACGAGGCGGTACGAGCTTTGGAGGGATGCCTGTATGTCTTTAAATGCAGGAAGACCAGTGAAAGAGGCTGCCGGGGTAAATGAGCGATATCCAAGTTAAGcacTTCAGTTTTGGGAAGCAGCCTTGGCCCTGGGCCCTCTGTTAAGAGATCTCTGCTTTATGACTCGCTCCTGTGGTTAGCTGGAAGCCTGACCCCGTGCCGCTGACAAGCCATCAAAGCAAATACTGTGTGAACAACACGCAGGCAACTGCGGCGgagttatttttttcctttgctgtTAATCGCCGCTGAGATGGACCCTCTGACAGATGATCTGATTTAAGGCTTGTTTGCGGCGTGAGTCAGAGGAAGTGCGCTTCAGTGCAAGTGCAGtgaaataaagaacaaatgCGCACTGTAAACTCAGAGGAAGGGGGGTAACAGACATCCCTAAGGATTGCGGGGGGAGCGCTGAGTTACGTGAGCCGTAGCCGACGGCTAGACGTGAGTCAGTTAAGACTCATGGTACTTATTCAATTATGCATACACTACAGTAATATAAAGGCCTATGAGACTTCCAAGAAGCTATTCCCTCATAGACAGGAATGTGTCATTTCTCGGAAAACTGGTgttggtttaaataaaaacgtGATGAACTTTA
>XR_006250758.1
CGGCACGCACGCTTACAAGTCCCAACATAAAGACTGCCACGAGTCGAACAGATAGCCTGAGCTGGTTTCTACCTGCTCCATCTCTGTGTGGGAGTTTGCTGACCCATTGTCACACGCACCGCCGTGTGTTTGACTGAACGTGTCTATATTTCCAGATGTGTACTGCTGTGCACTTTGCCTGGTTGTGCAACCAGCATGAATCACTGGGCAACAGGTCGTAAAAATAGTTATTCAAAGGAGCACCACAAAAGTCACTGGACTGTAGAGAACTTCTCAGGAACTATAGCTGTACCTGCGGCAATGtgcttgtgtctgtgtgtgcgtgtgtcaaAAGTTTCATTATCGAGAGAAATAGATGCACCACACTGAAACAGAGAATGAGAAGAcaagaaagagtgagagagagagagagggatgtgATCGCTCATTTGAAGAGGGGAAACGGCAATGAACACTTGTCTGCTCTCTTTCTTCTGTCTTTCAAGCACCTGATTGTCAACGTGGCTGAAtggactgagagagagagagagagagagagagagagagagagagagagaaagaaagagagagaggagagagagccTGAGCAATTACCAGGCCATGGACTGACGTGCAAGATAAGCCTGTCCTGTTGTATAGGCTCACCAACACGTTTTCCCTGAGCTAGAGTGTCAGTTATCATTGCAGATGCAAACTGACAGGATAAATCTGGTTGCGACTGTATTGGTGGTCCCGGGCAGGTGCTTTCTGGGTCACGAGGCGGTACGAGCTTTGGAGGGATGCCTGTATGTCTTTAAATGCAGGAAGACCAGTGAAAGAGGCTGCCGGGGTAAATGAGCGATATCCAAGTTAAGcacTTCAGTTTTGGGAAGCAGCCTTGGCCCTGGGCCCTCTGTTAAGAGATCTCTGCTTTATGACTCGCTCCTGTGGTTAGCTGGAAGCCTGACCCCGTGCCGCTGACAAGCCATCAAAGCAAATACTGTGTGAACAACACGCAGGCAACTGCGGCGgagttatttttttcctttgctgtTAATCGCCGCTGAGATGGACCCTCTGACAGATGATCTGATTTAAGGCTTGTTTGCGGCGTGAGTCAGAGGAAGTGCGCTTCAGTGCAAGTGCAGtgaaataaagaacaaatgCGCACTGTAAACTCAGAGGAAGGGGGGTAACAGACATCCCTAAGGATTGCGGGGGGAGCGCTGAGTTACGTGAGCCGTAGCCGACGGCTAGACGTGAGTCAGTTAAGACTCATGGTACTTATTCAATTATGCATACACTACAGTAATATAAAGGCCTATGAGACTTCCAAGAAGCTATTCCCTCATAGACAGGAATGTGTCATTTCTCGGAAAACTGGTgttggtttaaataaaaacgtGATGAACTTTA
>XR_006250759.1
agtgtgtgtgtgtgtgtgtccatgacTACAAAATGAGCCTGTAAAGCAACGCAGTCGGCCAGTAGGCTACACGCCCCGTTTTCAGAGTTGGATCTACTGGAGCTGCGGTGTTCCCAACATCCCCCAGTGATGGTTTCCTGGTGCGGACCGGACTGCACCTGCCGCCACGCGCAATACGCACTTCGCAGAAACGCAAGAGGACGCGTGAAGTTATCTGCGGCTTTTGCCTATGATAAAAGACACAGTTACCGCAAACTCCTCGCGCTCGCGTGAGAGCCGAGAAATGCGTGGATTGTTATGAGCGACAAAGTAAGTGTGTAAAACGATCCCTTGGGCTATTGGGAACGCATGTGCATGTTCGGAGGAGGGGGGGAACGGCTCTGTTGTTACTAAGAGGGGATATTTTGATGATGTGCCACATGCAATGTTCTTTCACTCCGCCAAGCCTTGCCAACGTCCGCATTCCGGGCTCTGTTGCGCAGATTAAAATCCAAAGTTGAGGGCGAacgtgaggaaatatgcatgtTTAGCCCTGCGTTTAACGCCGCGCGCGGATGTCTTATTTAAAAACCTCTAAGCTGAGCACTTCTGTTAAAGAACAACATCACGCCCCCTGTAAGTGCGCAGTTGCCGAAGGATGTCACAGCAAACCGAGTAACCTATGTCTGCGTACATGCAACCGACCCCAGCCTTTAATATTGACGATCAACTAAATATATTGATGTCTGAAGCGCGCAGAGAAGAGAGAGGGCTCACTTGAGATGTAAAGCAGTGAAGCCTCGCGCACTTTTAGAAGTTGCGCTGTTATTTCAGTACCATCGTCATCATCATTACACAAGATAAAGCGGAACAGGCGCCTCGGCGATATGAAGCAAAACTTCGCAGAAACGAGGAGCCGGCTCGATGCCTCTAATAAACAACACCTGATTGTCAACGTGGCTGAAtggactgagagagagagagagagagagagagagagagagagagagagaaagaaagagagagaggagagagagccTGAGCAATTACCAGGCCATGGACTGACGTGCAAGATAAGCCTGTCCTGTTGTATAGGCTCACCAACACGTTTTCCCTGAGCTAGAGTGTCAGTTATCATTGCAGATGCAAACTGACAGGATAAATCTGGTTGCGACTGTATTGGTGGTCCCGGGCAGGTGCTTTCTGGGTCACGAGGCGGTACGAGCTTTGGAGGGATGCCTGTATGTCTTTAAATGCAGGAAGACCAGTGAAAGAGGCTGCCGGGGTAAATGAGCGATATCCAAGTTAAGcacTTCAGTTTTGGGAAGCAGCCTTGGCCCTGGGCCCTCTGTTAAGAGATCTCTGCTTTATGACTCGCTCCTGTGGTTAGCTGGAAGCCTGACCCCGTGCCGCTGACAAGCCATCAAAGCAAATACTGTGTGAACAACACGCAGGCAACTGCGGCGgagttatttttttcctttgctgtTAATCGCCGCTGAGATGGACCCTCTGACAGATGATCTGATTTAAGGCTTGTTTGCGGCGTGAGTCAGAGGAAGTGCGCTTCAGTGCAAGTGCAGtgaaataaagaacaaatgCGCACTGTAAACTCAGAGGAAGGGGGGTAACAGACATCCCTAAGGATTGCGGGGGGAGCGCTGAGTTACGTGAGCCGTAGCCGACGGCTAGACGTGAGTCAGTTAAGACTCATGGTACTTATTCAATTATGCATACACTACAGTAATATAAAGGCCTATGAGACTTCCAAGAAGCTATTCCCTCATAGACAGGAATGTGTCATTTCTCGGAAAACTGGTgttggtttaaataaaaacgtGATGAACTTTA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39023 False 909 lncRNA 0.50 3 5487097 5494643
TU39068 False 237 lncRNA 0.47 1 5519103 5519339
XR_006250757.1 True 5149 lncRNA 0.42 3 5487063 5498849
XR_006250758.1 False 1395 lncRNA 0.48 4 5487063 5503476
XR_006250759.1 False 1830 lncRNA 0.49 5 5487063 5519852

Neighbor

gene id symbol gene type direction distance location
net1 net1,LOC107560732,LOC107586493 coding downstream 10881 5454172 ~ 5476182 (-)
prmt8b prmt8b,LOC107757234,LOC107690649,LOC107694311,LOC108436013 coding downstream 252007 5224238 ~ 5235056 (-)
LOC122342835 LOC107571041,LOC107571048,LOC107658713,LOC107739149,LOC107704613,LOC107658717,LOC107733017,LOC107745022 coding downstream 270901 5207074 ~ 5216162 (-)
LOC122342834 LOC107690655,LOC107758320,LOC107745022,LOC107758319 coding downstream 281742 5201608 ~ 5205321 (-)
LOC122343482 LOC107757207,LOC107690654,LOC107758319,LOC107690655,LOC107574392,LOC107575819,LOC107573508,LOC107698248,LOC107573509 coding downstream 285379 5197046 ~ 5201684 (-)
podxl podxl coding upstream 20437 5540289 ~ 5549648 (-)
LOC122342741 cyb5r3,LOC107590616,LOC107694301,LOC107757248,LOC107655553,LOC103021355,LOC105020308 coding upstream 55805 5575657 ~ 5578580 (-)
btbd11a btbd11a,LOC107757250,LOC107694300,LOC107725623,LOC107655613,LOC107560708,LOC108279962,LOC108426402 coding upstream 60650 5580502 ~ 5711019 (-)
si:dkey-222f8.3 si:dkey-222f8.3,LOC107694297,LOC107757251,LOC107725584,LOC107560723,LOC107655610 coding upstream 200564 5720416 ~ 5724961 (-)
braf braf,LOC107725591 coding upstream 400793 5920645 ~ 5937372 (-)
G26295 NA non-coding downstream 4216 5482642 ~ 5482847 (-)
G26285 NA non-coding downstream 77024 5408627 ~ 5410039 (-)
G26281 NA non-coding downstream 97878 5386766 ~ 5389185 (-)
G26271 NA non-coding downstream 140008 5346785 ~ 5347055 (-)
G26270 LOC107754060,LOC107562295,LOC107694310,LOC107560735,LOC107757236 non-coding downstream 142193 5342498 ~ 5344870 (-)
G26359 NA non-coding upstream 35290 5555142 ~ 5569372 (-)
G26361 NA non-coding upstream 50692 5570544 ~ 5573432 (-)
G26398 NA non-coding upstream 184637 5704489 ~ 5710206 (-)
LOC122342480 NA non-coding upstream 195287 5715139 ~ 5716435 (-)
trnay-gua_3 NA non-coding upstream 197194 5717046 ~ 5717133 (-)
LOC122343483 LOC107571041,LOC107724548,LOC107658713,LOC107704613,LOC107739149,LOC107589471 other downstream 392423 5085090 ~ 5094640 (-)
LOC122343492 LOC107743325,LOC107580925,LOC107658806,LOC107656283,LOC100330186,LOC107744995 other downstream 729236 4731224 ~ 4757827 (-)
G25880 LOC107658814,LOC107726023,LOC107592209 other downstream 1219568 4264926 ~ 4267495 (-)
shank3b shank3b,LOC107725995,LOC107592218,LOC107656300,LOC107580703,LOC107743477 other downstream 1325235 4133977 ~ 4161828 (-)
LOC122342823 scube2,LOC107750541,LOC107585952,LOC107674429,LOC107593229,LOC107700597 other downstream 1868696 3602356 ~ 3618367 (-)
G26405 tnnt2c,LOC107560724,LOC107655611,LOC107725585 other upstream 199160 5719012 ~ 5720250 (-)
G26408 NA other upstream 210166 5730018 ~ 5736946 (-)
G26414 LOC107560737,LOC107690649,LOC107757234,LOC107589816,LOC107694311 other upstream 330552 5850404 ~ 5853366 (-)
G26462 NA other upstream 386903 5906755 ~ 5913538 (-)
mrps33 mrps33,LOC107694294,LOC107597883,LOC107725593,LOC107600452,LOC107655561 other upstream 418203 5938055 ~ 5940015 (-)

Expression


Co-expression Network