akr1b1.1 (akr1b1,LOC107725653,LOC107676909,LOC107587163,LOC107591878)


Basic Information

Item Value
gene id akr1b1.1
gene name akr1b1,LOC107725653,LOC107676909,LOC107587163,LOC107591878
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 7413936 ~ 7463373 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU39830
TTCTTGAATGCGCTGAGGCGTGATGGACTTCGGGATGACGATCACGTTCCTCTGAATGTGGAAGCGGATGAGAACCTGTGCACAGATGCCAAATAAACATTGCATACCGTACTGGCCAACAGCAAGCTTTGACATAAGTAGGACGGAGGTCTCCTCACCTGGGCGGTAGTCTTCTTGTGCTTCTCTGCAATGGCCTTGATGTTGGGGTCATCAAGGAGAGAGGGATCTTCGGGTTTAGCCCTAAGTTTGAGAGAAGGTTAACCACAGAAACCAGAAATAAAGTCACCATCTTGAAACTAAacagcaaataataacaaagCTTCGGTATCTGGGAAAGGCGGCCTAACCAAGGTCTGTCTGGAGAACCCAGAGGACTGTACGCGGTGACTGTGATGCCTTTGGACTGACAGTAGTTAATCAGCTTCTCCTGAGTCAGATACGGGTGGCACTCGATCTGGAAATAAAAATACGGTACAAAAATGGGATAAAACGTGCCGTTTTAAACAAACACGAAACATACAGCAATACCAGTGATAAAATCTCCCTTAATACAAGCACTATGCCTGCAGACTAAAAGTCAAGCAGCATCCTAATGACATTTTAAGCCTATATTCCAGACAGATAACTGCGTCTGTTCTTCACAAGTAGCAGGAAATTAAAGGAGTGAAATTGAATTACACAGTAGCTGTAGGCGAAACGCTGTTCATTAGATAAATATTGACCTTTCTTGGTTCGTCTGCAATTGTCAAAGGAAAGAACACCGATgccctttaaaaaaagtatatggtACCGACCTGATTGTTGGCGGGTTTGTACTTGAGACCTGGTTTATTCAGGATGGCTTCAGTTTGTTCTCGATTAAAGTTGGAGATGCCAATGGCCTTGACCAGCCCAGCATCCACCAACTCCTCCATAGCCTCATACCTCCCAGGTGTCCAAAAAACTGCTTTCATCAGCAATGGTTAACCCTTCACTGTCCAGTGGGAACTGA
>TU39831
ttttttttttttttttttttttttttttttttttttttttttttAGCCGTTTGATGCAGAACTTTATTTGGGTTTttaaaccatacatcaatacAGTAAACAAGAGCTGCTCTTGTGAACCGGAAGTGCTTTTGTTGTCAACTTTGAGAGAAAGGAGCgtgcattaattcatttttaaaatatacattcttAGGACCAAACACTTTCTCATGTTATCTGTCTAATTGTGCAAAGTGTGTAacattgttcaaataaaaactttaaaaaaagtatatggtACCGACCTGATTGTTGGCGGGTTTGTACTTGAGACCTGGTTTATTCAGGATGGCTTCAGTTTGTTCTCGATTAAAGTTGGAGATGCCAATGGCCTTGACCAGCCCAGCATCCACCAACTCCTCCATAGCCTCATACCTCCCAGGTGTCCAAAAAACTGCTTTCATCAGCAATGGTTAACCCTTCACTGTCCAGTGGGAACTGA
>XM_043237542.1
GCTTCGAAAGAAGAGGCTGCTGCAGAGCGTGAAGGCTGTTGAAGTGTGCAGAGACTAACAACAAGTGCTTTATATTAGGTTTAATAAGTGCTTTATATTAAAGGTCACCATGACATTTGTGACTCTAAGCAATGGAGCTAAAATGCCAATTGTTGGACTGGGAACATGGAGGTCTGCTTCAGGTGAGGTCACAGAGGCTGTAAAGGCAGCTATCCTGGCTGGCTACCACCACATCGATGGGGCCCATGTGTATGAAAATGAGAATGAAGTTGGGGACGGAGTCAATGCCATGATTAACCAAGGAGTGTTGAAGAGAGAGGACCTATTCATAGTCAGCAAGctgtGGTGCACTTACCATGAGAAACACTTGGTAAGAGGAGCCTGTGAAAAGACTCTAAGCGACCTAAAACTGGACTACGTTGATCTCTACCTAATGCACTTTCCCATGGGCACTAAGCCTGGAAATGAGTTGTTCCCAGTCGATAAGGATGGCCAAGTAATTCCAGACAGCAGTAACTTTCTAGAAACATGGGAGGCAATGGAGGAGTTGGTGGATGCTGGGCTGGTCAAGGCCATCGGCGTCTCTAATTTCAACCGCGATCAGATTGAGAGAATCCTGAACAAACCAGGACTCAAGTACAAACCTGCCAACAATCAGATCGAGTGCCACCCGTATCTGACTCAGGAGAAGCTGATTAACTACTGTCAGTCCAAAGGCATTACAGTCACCGCGTACAGTCCTCTGGGTTCTCCAACCAGACCCTGGGCACAGGCAGGTGAACCATCACTGCTAGAGGAACCAAAGATCAAGGCCATTGCAGATAAGCATGGTAAAACCACAGCACAGGTCCTAATCCGCTTCCACATGCAGAGGAATGTCGTGGTCATTCCCAAATCCGTAAACCCCAAGAGAATCAAGGAGAACTTTGAGGTCTTTGATTTCGAGCTGAGTAAAGAGGAGATGAACACCATACTGAGTTTTAATAGAAACTGGAGAGCTTTTATGCTGGAATGGGCTTCCAAGCATAAGGATTTTCCACTGAATGCAGAATACTAGAACATTAATTAATCCAGTTTCTGACTGCAATGTGAAGTAGATAAGACTCCTGCATTTCTCATCAGGGATAAATGAATTACGTCAGTAATCTCAAAGAAAGATTTGAGGGACTAAATGTAGTTAATCGAAAGTAAAGCTCAAGCGAGCAGTTCAAGACAtaagaaacacatttaaaacataagacAGAGAGCCGTTTGATGCAGAACTTTATTTGGGTTTttaaaccatacatcaatacAGTAAACAAGAGCTGCTCTTGTGAACCGGAAGTGCTTTTGTTGTCAACTTTGAGAGAAAGGAGCgtgcattaattcatttttaaaatatacattcttAGGACCAAACACTTTCTCATGTTATCTGTCTAATTGTGCAAAGTGTGTAacattgttcaaataaaaatttt

Function

symbol description
akr1b1 Enables alditol:NADP+ 1-oxidoreductase activity; glyceraldehyde oxidoreductase activity; and retinal dehydrogenase activity. Involved in cellular hyperosmotic salinity response; glycoside metabolic process; and retinoid metabolic process. Located in cytosol and nucleoplasm. Implicated in arteriosclerosis; cataract; diabetic neuropathy; diabetic retinopathy; and type 2 diabetes mellitus. Biomarker of hepatocellular carcinoma and stomach cancer.

NR:

description
PREDICTED: aldose reductase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00011 AKR1B; aldehyde reductase

RNA

RNA id representative length rna type GC content exon number start site end site
TU39830 False 991 lncRNA 0.45 2 7462236 7463373
TU39831 False 481 lncRNA 0.36 5 7413936 7463373
XM_043237542.1 True 1463 mRNA 0.43 10 7458749 7461330

Neighbor

gene id symbol gene type direction distance location
cmasa LOC107725656,LOC107676932,LOC107587160,LOC107690429,LOC107583561 coding upstream 38881 7371023 ~ 7375055 (+)
LOC122343892 NA coding upstream 39942 7373854 ~ 7373994 (+)
LOC122343893 NA coding upstream 43661 7370135 ~ 7370275 (+)
kcnj8 kcnj8,LOC107725582,LOC107655555,LOC107729834,LOC107690420,LOC107587158,LOC107595650 coding upstream 44948 7365554 ~ 7368988 (+)
abcc9 abcc9,LOC107725580,LOC107655566,LOC107690381,LOC107583096,LOC107587156,LOC107729856 coding upstream 49478 7331871 ~ 7364458 (+)
psmc2 psmc2,LOC107587164 coding downstream 14284 7477657 ~ 7481279 (+)
tspan33a tspan33a,LOC107725621,LOC107587188,LOC107729833,LOC107690898,LOC107595743 coding downstream 31583 7494956 ~ 7501031 (+)
smo smo,LOC107725609,LOC107690544,LOC107729864,LOC107676906 coding downstream 40199 7503572 ~ 7510838 (+)
cax1 LOC107725610,LOC107587166,LOC107676922,LOC107690555,LOC107584270,LOC107729854 coding downstream 48168 7511541 ~ 7519725 (+)
zc3hc1 zc3hc1,LOC107676937,LOC107587167,LOC107690584,LOC107584496 coding downstream 64964 7528337 ~ 7532567 (+)
G26669 pus7l,LOC107591455 non-coding upstream 325577 7083300 ~ 7088359 (+)
LOC122343425 NA non-coding upstream 352894 7057424 ~ 7061042 (+)
LOC122342579 NA non-coding upstream 400275 6985243 ~ 7013661 (+)
G26585 grip1,LOC107587171,LOC107655593 non-coding upstream 1009537 6399167 ~ 6404399 (+)
G26517 LOC107655597,LOC107725654,LOC107757228,LOC107560265,LOC107587133 non-coding upstream 1115856 6216841 ~ 6298080 (+)
LOC122342925 NA non-coding downstream 127188 7590561 ~ 7636680 (+)
LOC122342735 NA non-coding downstream 652515 8115888 ~ 8123874 (+)
G26994 NA non-coding downstream 661886 8125259 ~ 8125994 (+)
LOC122342736 NA non-coding downstream 665788 8129161 ~ 8132328 (+)
G27066 NA non-coding downstream 712092 8175465 ~ 8175799 (+)
G26692 NA other upstream 186499 7187940 ~ 7227437 (+)
vhll NA other upstream 1023009 6388543 ~ 6390927 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other upstream 1515109 5862607 ~ 5898827 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other upstream 1551623 5781944 ~ 5862313 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other upstream 2016050 5354332 ~ 5397886 (+)
ube2h ube2h,LOC107676921,LOC107690610,LOC105888480 other downstream 69539 7532912 ~ 7558489 (+)
col7a1l col7a1l,LOC107725642,LOC107744879,LOC107676908,LOC107555540,LOC107592433,LOC108435442 other downstream 578059 8041432 ~ 8100749 (+)
G26993 NA other downstream 674365 8137738 ~ 8138439 (+)
G27079 NA other downstream 784539 8247912 ~ 8249223 (+)
stmp1 NA other downstream 1019517 8482890 ~ 8483831 (+)

Expression


Co-expression Network