G27050


Basic Information

Item Value
gene id G27050
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8123114 ~ 8123860 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU40083
GCTTTATTTATAGGGTCAACAACTCCTTAAGACAATAGTTGTTTTTGAGATGCTTTCCGTGTGTCACTAAGCTCCCTCCTGTGAATATAATGTGCATTAAAGCCATATGAGAATTATCTTTTTCCTCCAAGTTCCAGGTGAGCTGCTTCCCAGAGTTTAGGTTCCCAACCTTGATTGAAAACACCTGAAACCTCATTTAATTATCATCACTGTGATTACTTGTACAACACTTGACGCAAAAGAGGATGTTGTGGTGGGATATTGTAAATGGTTTGAAATACACCTTCAGAACACCTTGAAGCTCCAAAGACTTGGTGGCTCAGTTGATTAAGCGTTAAACTTTAATCTTGGAGGCCCGAGTTCAAATCCCACTAtttcttatcttatcttatcttaaaTCACTGTCGTTAAATCAGTCTCAAAGCACACCAAAGAATAACTCTGAATGTGAAAGCCACTGTGGCGCTAGTGGCTAAACACACATTAGTTGCAGACAAGGTTACTGCAGaagcgtgggttcgaatcccacctcACATGTCATCTGAGGAAATgggaagaaacatttaatttaatggaaAACAACGGGGttaacactgaaatataagTTCCAACACATGTTTAAACAACAGACCTGTGGCTCAGTCGTAAGAGAGCTGCCTCACGGTATCAGAGGTTGCTGGTTCGAGGCCAGTCAGACCTCAGAGAAGTGAGTGAGAAGGTCTGCGGGGGATCGGGAGGATCCCCCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40083 True 747 lncRNA 0.42 1 8123114 8123860

Neighbor

gene id symbol gene type direction distance location
mest LOC107676916,LOC107725549,LOC107690703,LOC107744881 coding downstream 6662 8112969 ~ 8116452 (-)
chchd3a chchd3,chchd3a,LOC107555550,LOC107676930,LOC107584776,LOC107725634,LOC107690666 coding downstream 207507 7859957 ~ 7915607 (-)
plxna4 plxna4,LOC107725603,LOC107555548,LOC107676920,LOC107729844,LOC107592200 coding downstream 281065 7651083 ~ 7842049 (-)
nrf1 nrf1,LOC107676924,LOC107690626,LOC107725613,LOC107584621,LOC107555547 coding downstream 534697 7572881 ~ 7588417 (-)
klhdc10 klhdc10,LOC107587165,LOC107729855,LOC107690572,LOC107584414 coding downstream 595988 7518192 ~ 7527126 (-)
atp2b1a atp2b1a,atp2b1,LOC107676914,LOC107690705,LOC107585291,LOC107725550,LOC107744884 coding upstream 7936 8131796 ~ 8158369 (-)
epyc epyc,LOC107744933,LOC107690887,LOC107592694,LOC107659828,LOC107725680,LOC107565627 coding upstream 131690 8255550 ~ 8266189 (-)
kera LOC107725681,LOC107744893,LOC107690746,LOC107596099 coding upstream 143864 8267724 ~ 8274530 (-)
lum lum,LOC107659852,LOC107565637,LOC107725655,LOC107744894,LOC107690761,LOC107585613 coding upstream 154700 8278560 ~ 8281902 (-)
dcn LOC107744892,LOC107690767,LOC107585689,LOC107659851,LOC107565639,LOC107725622 coding upstream 165395 8289255 ~ 8304456 (-)
G27051 NA non-coding downstream 1406 8121346 ~ 8121708 (-)
G27032 NA non-coding downstream 88102 8030763 ~ 8035012 (-)
G27031 NA non-coding downstream 95372 8027540 ~ 8027742 (-)
G26956 NA non-coding downstream 266603 7854749 ~ 7856511 (-)
LOC122343472 NA non-coding downstream 666473 7399666 ~ 7456641 (-)
G27063 NA non-coding upstream 2482 8126342 ~ 8126824 (-)
LOC122342218 NA non-coding upstream 44413 8168273 ~ 8169587 (-)
LOC122342531 NA non-coding upstream 76317 8200177 ~ 8246509 (-)
G27240 NA non-coding upstream 352304 8476164 ~ 8478311 (-)
G27249 LOC107725541,LOC107659837,LOC107590048 non-coding upstream 409971 8533831 ~ 8536676 (-)
G26951 NA other downstream 564661 7555115 ~ 7558453 (-)
si:dkey-261e22.4 NA other downstream 902203 7214334 ~ 7220911 (-)
il22 NA other downstream 1382373 6737641 ~ 6740741 (-)
msrb3 msrb3,LOC107725596,LOC107587134,LOC107757268,LOC107561995 other downstream 1761630 6350491 ~ 6361484 (-)
arhgef39 arhgef39,LOC107725686,LOC107655603,LOC107757260,LOC107694288 other downstream 1870466 6085892 ~ 6252648 (-)
LOC122343432 NA other upstream 124051 8247911 ~ 8249927 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other upstream 336646 8460506 ~ 8468028 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other upstream 389770 8513630 ~ 8517583 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other upstream 746355 8870215 ~ 8874598 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other upstream 768159 8892019 ~ 8941403 (-)

Expression


Co-expression Network