LOC122342531


Basic Information

Item Value
gene id LOC122342531
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8200177 ~ 8246509 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU40106
CCTCAAACGAGCTCGAGGTTTTCGTATGTATTGTAGTTTGGATGTCATGTGTACGTGCGTGTTTGGTGGCTTCTAAAAAGCATTTGGATTCTGAACCtgcacttcaaaaaaaaagaaaagaaaagaaaatcaacacTGTACTTTAGACCGCCATTTATGTTCTtttgttaaaagtatttttgtcctttttaaatTTGCAATCTAAGTTTAATCCAGTTATATAATGGCTCAGAAAAGTGAAATCAGTTTCCTAGAACAAAAATTCACAAATCCATGGAAATGTCAATGACAAATTAAGTTAATACTTGCTTTTCAGGCACAATTTGAAtagaattttccattttatgtatgtgatcttggaccacaaaaccagtcactggggtatatttataacaatagccaaaaatatattgtatgggtcaaaattataaatttttctttaatgccaaaaatcattagaatattaaataaagatcatgttccatgaaaatatttaataaatatcccactgtaaatatatcacaa
>TU40259
aaagaaaaaaggcTCAGCCGGCCGTAGCTGGGCACCATTTATAACCACCTCTCCAATCACTGTGGGGTTTCACAGACTGGCAGAACTGTTAATAAAAGCCTGTCAGACTGAACCTTTCAGCCCTCAGAGACACCAAGGCTGGACTCTGataagaagaaagagaaaaattcCCTTTTATAGACGCAGAGGAGCAAAGTGGCTTAGGTTGGAGGGTTTCAGGAAACCTACGATATAAAGAGCAAA
>XR_006250589.1
catcaaatgaaatgtaaacagGCTGCGGATCAGCACTTCTGTTAATTGACTCTCTTGGCATATGATTGTTTTGAGCACAAGCACGCCTTGTTCCCATCCTCACCCCACAGCTCTGTTTTTGGCACAAGGCGGTTTCAAAAAACCCATGTGGCAAACAGGTGCCATTTCCTAACTGGTTTTCAACACCAGGTGGCCCTAAAGTGCCACAGCAGAGTAAAGCCCACCAGCAGCACCCAAGGAAGGCCGACCAGAGCAATGTGTTGATAATCCTAGTGCCACATTTAGATTACAGTGCATGGCATCTGTTAGCGAGGGGCATGAAGTAATGGAGGAGACCCGAGCAGGACAAACCTCTCCAATTACATAGACGATGGGGACACGCACTTCTTTGTCAATGGAAGGAATCTACACAAGACAAGGCCTGCCTCTGTTTCTCCACGTTTCTCAACGCTGGCTCAAATTtaagtttcagtatttttctctctctccgtttTATGATGTTATGAGAACatgggaaaaaagagaaaagaaaatgtgtgaaaagctGTTTGGTGCTGGATGAACTGACCACTTTTCCGACCTCAGACAGAGCACTTAAGGATAAAGGAGACAAGGTGGAAGAGATGCGATTGGCCCCTGCCCCGTCATCATCAAGGAGACAGGTTGGCAAGGAGGAAATGGACATAAATGCGGTCGCCTAACTGTGTCAAGGACGCAGAAGCCAAACCTGGTGCAGTTCACCTGTGAGAGACCTGAGAGCACAATCGCAGAGAGGAACTGACCCACTAAACCGACTTACAACTCTACAGTCTGCACTCTTACTTTACTAAAGCATTAACACCTTATTCCTGCGAAACCTCCAATGACCAACAAAGCTCTAGTGATATTGCTCAAAAGGTCAGGTTAGTGCTTTTCTATGTCTTCAGCCATTTCATATCTCTACTTCTAGATCCCTTTTTCCTCCTGTTGAACTAGTAAATGTGTGAATGTAAGCGTtcctttttttcaaagaaaaaaggcTCAGCCGGCCGTAGCTGGGCACCATTTATAACCACCTCTCCAATCACTGTGGGGTTTCACAGACTGGCAGAACTGTTAATAAAAGCCTGTCAGACTGAACCTTTCAGCCCTCAGAGACACCAAGGCTGGACTCTGataagaagaaagagaaaaattcCCTTTTATAGACGCAGAGGAGCAAAGTGGCTTAGGTTGGAGGGTTTCAGGAAACCTACGATATAAAGAGCAAAGAATATCAGCTTGTTGgagattttatttcaaagaattCCGAACTGGAATGTCCGAGTATTTATGGAATTCCCAGGGCTCTTGAAAAGTGACCCTTCGCATTACTGCTAGTGAAGGGGATCCCCAAAAAGGTGAAAGCCTTACACAACTCATGTGACTCAAGTCTGATTTACAAGCAGGACGAGTTCTTTTAATATCTTCAAGGACTATGACGGAGGTCTTGGAAAGCGGTTTTGGATCAAGGCTTGACATTTCCGCTATAGGGTATCCCCCCAACTTCCATTCCCACCTCCCTTTTGGCCTGTCTGAGATCACGTGATCACAAGACCGTGCGCacgtgcgtgtttgtgtttatgttatgtGCCAAGAATCTGGTTTGCCAGGGTCACCTCCATATAAGGTAAGTGCTTAGCTCAGCACAGGCGAATTCCTCTCGTTATTTAGCGCCAAGAATGCTGCTGTTCATCCGTCACCGAGCCCGTGACAGTTGCTGTAAATTAGCTCGCGCTCTGTAAAGGTCGGTTCTCCGTTCTGACACATGCCGAACTCTTTATGTGACTCAGCCTGAACACTCATTCAGTAATGAGAGCGGCTAGGGATCCGGCGGcccagtgtttgtgtttgggaAGCTTCTGCGCTGAAGAGTTTGGAGGGAAATCTCCCTAAAGGCCGGCGGGAATTCCCCCTATGTTTCCACAGCTGTCTGCCGCACCACCTGGGGCTCTGCATCAGAGCTGGGCAGCTCCCAACAGCTGCCTATCCGTCGTTCACGGTCCCTCACAGTCCTTTGGACAACTTGATACCAAACATTCTTTGGGGTTGCTGTACGTACACATCACGCTGCTTTAGACAGTCGCAGCAGTCTGAGAGTCCTCAAACGAGCTCGAGGTTTTCGTATGTATTGTAGTTTGGATGTCATGTGTACGTGCGTGTTTGGTGGCTTCTAAAAAGCATTTGGATTCTGAACCtgcacttcaaaaaaaaagaaaagaaaagaaaatcaacacTGTACTTTAGACCGCCATTTATGTTCTtttgttaaaagtatttttgtcctttttaaatTTGCAATCTAAGTTTAATCCAGTTATATAATGGCTCAGAAAAGTGAAATCAGTTTCCTAGAACAAAAATTCACAAATCCATGGAAATGTCAATGACAAATTAAGTTAATACTTGCTTTTCAGGCACAATTTGAAtagaattttccattttatgtatgtgatcttggaccacaaaaccagtcactggggtatatttataacaatagccaaaaatatattgtatgggtcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40106 False 525 lncRNA 0.30 1 8200177 8200701
TU40259 False 243 lncRNA 0.46 1 8201571 8201813
XR_006250589.1 True 2543 lncRNA 0.45 4 8200278 8246509

Neighbor

gene id symbol gene type direction distance location
atp2b1a atp2b1a,atp2b1,LOC107676914,LOC107690705,LOC107585291,LOC107725550,LOC107744884 coding downstream 41808 8131796 ~ 8158369 (-)
mest LOC107676916,LOC107725549,LOC107690703,LOC107744881 coding downstream 83725 8112969 ~ 8116452 (-)
chchd3a chchd3,chchd3a,LOC107555550,LOC107676930,LOC107584776,LOC107725634,LOC107690666 coding downstream 284570 7859957 ~ 7915607 (-)
plxna4 plxna4,LOC107725603,LOC107555548,LOC107676920,LOC107729844,LOC107592200 coding downstream 358128 7651083 ~ 7842049 (-)
nrf1 nrf1,LOC107676924,LOC107690626,LOC107725613,LOC107584621,LOC107555547 coding downstream 611760 7572881 ~ 7588417 (-)
epyc epyc,LOC107744933,LOC107690887,LOC107592694,LOC107659828,LOC107725680,LOC107565627 coding upstream 9041 8255550 ~ 8266189 (-)
kera LOC107725681,LOC107744893,LOC107690746,LOC107596099 coding upstream 21215 8267724 ~ 8274530 (-)
lum lum,LOC107659852,LOC107565637,LOC107725655,LOC107744894,LOC107690761,LOC107585613 coding upstream 32051 8278560 ~ 8281902 (-)
dcn LOC107744892,LOC107690767,LOC107585689,LOC107659851,LOC107565639,LOC107725622 coding upstream 42746 8289255 ~ 8304456 (-)
LOC122342541 LOC107725512,LOC107565629,LOC107690781,LOC107744891,LOC107585840 coding upstream 74945 8321454 ~ 8325846 (-)
LOC122342218 NA non-coding downstream 30590 8168273 ~ 8169587 (-)
G27063 NA non-coding downstream 73353 8126342 ~ 8126824 (-)
G27050 NA non-coding downstream 76317 8123114 ~ 8123860 (-)
G27051 NA non-coding downstream 78469 8121346 ~ 8121708 (-)
G27032 NA non-coding downstream 165165 8030763 ~ 8035012 (-)
G27240 NA non-coding upstream 229655 8476164 ~ 8478311 (-)
G27249 LOC107725541,LOC107659837,LOC107590048 non-coding upstream 287322 8533831 ~ 8536676 (-)
LOC122343385 NA non-coding upstream 515590 8762099 ~ 8774171 (-)
G27263 NA non-coding upstream 557646 8804155 ~ 8805230 (-)
G27257 NA non-coding upstream 558735 8805244 ~ 8809184 (-)
G26951 NA other downstream 641724 7555115 ~ 7558453 (-)
si:dkey-261e22.4 NA other downstream 979266 7214334 ~ 7220911 (-)
il22 NA other downstream 1459436 6737641 ~ 6740741 (-)
msrb3 msrb3,LOC107725596,LOC107587134,LOC107757268,LOC107561995 other downstream 1838693 6350491 ~ 6361484 (-)
arhgef39 arhgef39,LOC107725686,LOC107655603,LOC107757260,LOC107694288 other downstream 1947529 6085892 ~ 6252648 (-)
LOC122343432 NA other upstream 1402 8247911 ~ 8249927 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other upstream 213997 8460506 ~ 8468028 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other upstream 267121 8513630 ~ 8517583 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other upstream 623706 8870215 ~ 8874598 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other upstream 645510 8892019 ~ 8941403 (-)

Expression


Co-expression Network