stmp1


Basic Information

Item Value
gene id stmp1
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8482890 ~ 8483831 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU40166
TCACGCTGATGACATCTGAAGCTAGTTCAAGGCTAACCTCGTCAAAAGCAGAAACATACTAGATTTCGGGACCACTGTTACTgtcatttagcttttttttcaccGTTTCAAAGCTTTAATCATGATGCAATTCGTACTTGGCTTCACTCTGGGTAACGTGGTTGGCATGTATCTGGCACAGAATTACGAgGTACCcaatatttcaaagaaaatcgAGGCCTTTAAGAAGGACGTGGAGGCCAAGAAGAAGCCCCCAGAATGAAGGACGCAAGTCACGTGTGAAAATATGGCAAAGTGTAATAAATTGAAATGGGGGGgggatatttaaaaagaaaatatacacaaaatatacacaaaagaGCCCTCAAAGTGCACAGTGTATTCAGTATGGTGCCTCAGACTTGTTTTAAAGGTTGACCTGTTCTGCTTTTTGCATTGTATTCTGTTTCAATCTCTTTCTTTCCTAAATCAGGGTGAATATGTTCACGCCTGACAATTCGAAACAATGCAGTTTTATAAAGGCTTCTTAACATTATGTATTAAAGttatactaa
>XM_043238049.1
GGTATGTCACGCTGATGACATCTGAAGCTAGTTCAAGGCTAACCTCGTCAAAAGCAGAAACATACTAGATTTCGGGACCACTGTTACTgtcatttagcttttttttcaccGTTTCAAAGCTTTAATCATGATGCAATTCGTACTTGGCTTCACTCTGGGTAACGTGGTTGGCATGTATCTGGCACAGAATTACGAgGTACCcaatatttcaaagaaaatcgAGGCCTTTAAGAAGGACGTGGAGGCCAAGAAGAAGCCCCCAGAATGAAGGACGCAAGTCACGTGTGAAAATATGGCAAAGTGTAATAAATTGAAATGGGGGGgggatatttaaaaagaaaatatacacaaaatatacacaaaagaGCCCTCAAAGTGCACAGTGTATTCAGTATGGTGCCTCAGACTTGTTTTAAAGGTTGACCTGTTCTGCTTTTTGCATTGTATTCTGTTTCAATCTCTTTCTTTCCTAAATCAGGGTGAATATGTTCACGCCTGACAATTCGAAACAATGCAGTTTTATAAAGGCTTCTTAACATTATGTATTAAAGttatactaataaaatgtttgttttga

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0000502 proteasome complex cellular_component

KEGG:

id description
ko03022 Basal transcription factors
ko03050 Proteasome
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU40166 False 554 lncRNA 0.39 3 8482896 8483814
XM_043238049.1 True 577 mRNA 0.38 3 8482890 8483831

Neighbor

gene id symbol gene type direction distance location
tcp11l2 tcp11l2,LOC107586172,LOC107589958,LOC107694691,LOC107659845,LOC107744901,LOC107725683 coding upstream 237 8475706 ~ 8482653 (+)
pkp2 LOC107725677,LOC107659846,LOC107586091,LOC107694692,LOC107589947 coding upstream 8185 8460448 ~ 8474705 (+)
si:dkeyp-38g8.5 si:dkeyp-38g8.5,LOC107595941,LOC107659854,LOC107744947,LOC107690729,LOC107725679 coding upstream 228045 8252084 ~ 8254845 (+)
copg2 copg2,LOC107725548,LOC107676915,LOC107744880 coding upstream 369981 8103345 ~ 8112909 (+)
ucn3l ucn3l,LOC107725544,LOC107676913,LOC107595855,LOC107555541,LOC107744883,LOC107690866 coding upstream 380086 8101251 ~ 8102804 (+)
golt1ba golt1ba,golt1b,LOC107725527,LOC107591215,LOC107586262,LOC107659829,LOC108437943 coding downstream 142 8483973 ~ 8487631 (+)
kiss2 NA coding downstream 19035 8502866 ~ 8504047 (+)
dnai7 casc1,LOC107725557,LOC107659833,LOC107744936 coding downstream 290457 8774288 ~ 8780078 (+)
bcat1 bcat1,LOC107590116,LOC107725514,LOC107664876,LOC107744911,LOC107587341 coding downstream 320361 8804192 ~ 8815015 (+)
igf1 igf1,LOC107659835,LOC107725558,LOC107664880 coding downstream 337899 8821730 ~ 8832632 (+)
LOC122343529 NA non-coding upstream 105581 8374654 ~ 8377309 (+)
G27084 NA non-coding upstream 151588 8278559 ~ 8331302 (+)
G27073 NA non-coding upstream 183891 8225458 ~ 8298999 (+)
G27066 NA non-coding upstream 307091 8175465 ~ 8175799 (+)
LOC122342736 NA non-coding upstream 350562 8129161 ~ 8132328 (+)
G27162 NA non-coding downstream 268607 8752438 ~ 8752849 (+)
G27301 NA non-coding downstream 469091 8952922 ~ 8953122 (+)
G27345 NA non-coding downstream 570190 9054021 ~ 9057297 (+)
G27347 LOC107590965,LOC107695883 non-coding downstream 574037 9057868 ~ 9058292 (+)
G27352 NA non-coding downstream 585100 9068931 ~ 9076136 (+)
G27079 NA other upstream 233667 8247912 ~ 8249223 (+)
G26993 NA other upstream 344451 8137738 ~ 8138439 (+)
col7a1l col7a1l,LOC107725642,LOC107744879,LOC107676908,LOC107555540,LOC107592433,LOC108435442 other upstream 382141 8041432 ~ 8100749 (+)
ube2h ube2h,LOC107676921,LOC107690610,LOC105888480 other upstream 924401 7532912 ~ 7558489 (+)
akr1b1.1 akr1b1,LOC107725653,LOC107676909,LOC107587163,LOC107591878 other upstream 1019517 7413936 ~ 7463373 (+)
spx spx,LOC107589995,LOC107744902,LOC107694690,LOC107596170,LOC107725633 other downstream 4080 8487911 ~ 8491938 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other downstream 49985 8533816 ~ 8548002 (+)
ascl1a ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285 other downstream 390886 8874717 ~ 8890176 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other downstream 532010 9015841 ~ 9018333 (+)
apaf1 apaf1,LOC107744928 other downstream 554807 9038638 ~ 9221046 (+)

Expression


Co-expression Network