ascl1a (ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285)


Basic Information

Item Value
gene id ascl1a
gene name ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8874717 ~ 8890176 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU40250
AATAACCatctttattgatttttttaagtaCACGTGACAATGCATGCATAACATCTCAGTCTTTAGCACAGCAACAGTTACATGATATATGTagcatgttaaaatgcattcgCCGTCTAGCAAAAACTTCTGCAAATATATTTCGTTACGTTTTAATCATTAAGCTTTGGCGTAACGGAGAACATAAAGGCACGTTTTGAACAAAAGCGGTTTCACGATGAAAATAATTCGTCCCCCAAAAGCGTTGGCTCAGCCTTTGATCCCGTGATGCGTTGATTGCGGCTTGTTTGGGAAAATTACAGCAACTCCGCGCCACGACGAGACGCGACAGCTGAAGCTAACGGAGGACGGTAGGCGATCTGTGTTTTGGTACGATTAAACCGCTcagaaaaatacaatacaatatataaaataaaaaatctgcgACAGCGGGCCTCATAACGCCCCAAGCGTTTCTGTATTTACACGCGATTTGTTTTGCATAGGTATTCTTTTTTCCCGCGTTATTTCGTTACGTGTCATTTAAATACGTGGCGGCTAAATATTTCCGAACTATAGTTAAATTTGTGCATAAATACGGTGTACATGCAATACATAATAACTAATTTAATACGCAGTATCATGCTCTCTCTATCGCCGTTTTGATTAGAAAAAGTACGAGCCGAAAAGACGACGCTTATTTGGCGTCTCTAGATTTTCTAGCATTTCCTCTTCGGTTTCCTTGAACGTCTCCCAGCGGCTCCCACTTCCTGCTTCAGAGAGAAGATGCAGGACACCACTCCTGTTTTGTTTAACGGTTCTTCCAGGTAGGATGAGGTCAGAGAGCCCTCTCCAGATCCCCGTTCATCGGTCTGAAACCCGCGTCCATTCTTGCTTCGCTCCTCAGGTGATGTCGACTCGCTGGATGCTTCTGTGCACTTTGTGCCCCCCCATCCGAAACTCGGGCCATTTAAAAGTACCACGTGACACCACACCCCCAGAGCCGTCCCGTGCGCGTGTCACGCTTGCCCACAAACCCCTGGGGTATCACATCTGGTTCGTGTTGTCCGGTAAGAAAGAGTTCCCGGGGGGGCCTCTGGGCTGAGAGCGGAGTTCAAAGTCAGCATTTCGTAACGATCTCTCAgccgttttgtttttcttcttactCGGTgtcgttaaaaaaaaatccctgttAGTGAAC
>XM_043236989.1
cgttaaaaaaaaatccctgttAGTGAACGCACTTGCTTAATGCGTTTTAAAGGGGATTTGAGCGTTCAAGATTGGGAAAGCGCGCAGCATCCCGTTATTAATAATCATCACTACCTGTTGATTTTCTGTTTGTGACCGCACGGTGGCACCAAGGAGCCTAAAAGCGACCGGGACTGGGTTAAACGATACGCCGATCTCAGAAAgatatgcttttttaattgGTTTGTTTCCCGCCGGAAACAATCTGTCGGAATTCGGACGCGAAATGCAGCAGTTAGCTAACGAATAGTGAGTTAGCTAACGAATAGTGAATTAAGTCGAGTCCAAAACGAgctctattttttattattattcattagtGACCTTTTTGTCGTGTTTTGtactgaaacacaaacaaagtcGTACATCCTCAGGTGAGCGCGGCCCCTGCCTGATTGTGGTCAGGTAATGCCAATACGCTTCTGCTAATTGCACTTTGTTATGTTTAGCTAAACTTTTCTTCAACTACTAGCGAGCTGCGAAGGCCTGCTCGCACACGGTTCCTCATTTTGATGACTTTTGCGCGGTTCAAGTCTTAGGGGGCACTTTTAATAACGTAGACCGTGCACACAGTCTGCATTTAGCTCATAGGCTCTAAAAGCAGATTCgcgtatttttttatttgtgtttaataaatcGATGTTTGCGCACAGGCGTGTGCTTAGGCGTGTGCGAGCCATTCGTGACTTCGCCACCAGGTGGCGGTAGGTGTCTGTGCAATTTACGAAACATCTATTCTGTTCAAAACACTTCATTTCTTTAATGCAATGCACATAAGCTACTCGTTTAAATTGCAGGGCGACAGCAAACGTGCAAAAAGTGTATAAACCGAACAAAAAGTATCACTGAAAGGGCTTTACCTCGACGTTGGGTGTTTTGTGATCACTGGATATGGTGATATGagattattgtatttttgcatgTCTGTTTACACAGGGAGTACAGGCCCATGACCAAACCTGAACGAGAGAAGCCCAACAAAGCTAAGACTCGTCTTAAAGGAACATCTGGACACCGTTTCTCTTCAGCGGAGCCTGCTGATGCTTCCAGTGGCAGGAGCGGCACGCGCCCGGCGTACGCAACGCAAGCGCATCTCTGGGGGCGTGGTCAGGAGGAACGCGCGGCGGGCCGCCGGCGTATTGAAAAGGCCGCGCTGTTACCATCTCACAACTCAGAGCAGGTCGAGAGTCCGGTGCAACCCCTGCCCATTGAAGCCACACGTGAACGCCACGAGCAAGACGCACGGCCGCTGGGCATCCCAAAGAAAACTTTTTGCGTTTTTTCTCGCtccttttcttttcctccgcGAAATGGACATCACTGCCAAGATGGAAATAAGCGTAAACCAGCAGCAGTTCATGCCACCTGCCTGCTTTTTCGCCTCTCAGAGCATCCAGCTCAGTCCGACCGACAGCCAGTGCAGCAACAAGTCCGCGTCCAAGCAGGCGAAAAGGCAGCGCTCGTCCTCTCCGGAGCTGCTCCGGTGCAAAAGGAGGCTCAACTTCGCCGGCTTCGGGTATAGCCTGCCCCAGCAGCAGCCGCACGCGGTGGCCAGGCGCAACGAGAGAGAGCGCAACCGGGTAAAGCTGGTGAACAACGGCTTCGCCACTCTCCGCGAACACGTTCCCAACGGAGCGGCGAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCGGCTGTGGAGTACATCCGCGCGCTCCAGCAGCTTCTGGACGAGCATGACGCGGTGAGCGCGGCGTTCCAGTCAGGCGTCCTGTCACCCACCATCTCCCAAAATTACTCCAACGACATGAACTCTATGGCCGGCTCGCCCGTGTCCTCTTACTCCTCGGATGAGGGCTCCTACGACCCTCTGAGTCCAGAAGAGCAAGAGCTCCTGGACTTCACCAACTGGTTTTGAACGTTCGCGAAATCAAGGAAATGCCTAAAAATCGCAGCACTCGCTTGGGAGGAACCCGGGTGTCCTCCAAGAACACAAAGCACTGCGTTTGCGCTTCGGTCCGGTTCGGATAGACTCGAATCCGCACCCAGAGATGGCCCACACAAACCGGCAAACCACGGGGTCCCGAGTGTCAAAGAGCCAAAGGACTAAAAGGGAAGAGCGGGAGTCCAGTCCTTCCAGCGCATCCGCCCaagaaatctatttttaaaatgactttccaCTACACTGTGGCGCGtatactaaaaacaacaacaataagcAAAACGTTGTTCTTTTACCTATGCTAATGTAATCAAAGAAGGTTTGCCCTGATTGACCCCTCTCACAAACTCTAATATGCTTCCAACTTGGCGAATTTTATTATATGAAGTTCTATTTGTATaaaacatgttgtttttttgaaatatattaagctatttttgtatgtaagagatttatagatgtttttgtacgcgttcattttaatatgtatctATTTTTGACCTATAGCCTGCCGTAAATCGCTCATTACCTCTCGCTTATTCAGACTTCTAGTCTCAAATGCATCGCAGCTGGCAATTCCCTTTACGGTCGTGGAGGTTTATAAGAGTTTCGATTTCAACACCAACGTGTCTTATTTAATAGGAATACTAATTGCAATGGTGATGCGACTCGGGAGTGATCAAAGGTTATGCAGCTATTGTCCAAACGGAGGTGTTTTGTGTCTCCACACTGCCTGTTCCACTTTGCCTTTACAATGCTGGGTTTTGCATCTCAGAAAATAAGAATATGCCTTATCTCCATATTTTCTACAGTTTAGTCTCATAATAAAAGTTTGGAAAAGAAA
>XM_043236990.1
cgttaaaaaaaaatccctgttAGTGAACGCACTTGCTTAATGCGTTTTAAAGGGGATTTGAGCGTTCAAGATTGGGAAAGCGCGCAGCATCCCGTTATTAATAATCATCACTACCTGTTGATTTTCTGTTTGTGACCGCACGGTGGCACCAAGGAGCCTAAAAGCGACCGGGACTGGGTTAAACGATACGCCGATCTCAGAAAgatatgcttttttaattgGTTTGTTTCCCGCCGGAAACAATCTGTCGGAATTCGGACGCGAAATGCAGCAGTTAGCTAACGAATAGTGAGTTAGCTAACGAATAGTGAATTAAGTCGAGTCCAAAACGAgctctattttttattattattcattagtGACCTTTTTGTCGTGTTTTGtactgaaacacaaacaaagtcGTACATCCTCAGGTGAGCGCGGCCCCTGCCTGATTGTGGTCAGGGAGTACAGGCCCATGACCAAACCTGAACGAGAGAAGCCCAACAAAGCTAAGACTCGTCTTAAAGGAACATCTGGACACCGTTTCTCTTCAGCGGAGCCTGCTGATGCTTCCAGTGGCAGGAGCGGCACGCGCCCGGCGTACGCAACGCAAGCGCATCTCTGGGGGCGTGGTCAGGAGGAACGCGCGGCGGGCCGCCGGCGTATTGAAAAGGCCGCGCTGTTACCATCTCACAACTCAGAGCAGGTCGAGAGTCCGGTGCAACCCCTGCCCATTGAAGCCACACGTGAACGCCACGAGCAAGACGCACGGCCGCTGGGCATCCCAAAGAAAACTTTTTGCGTTTTTTCTCGCtccttttcttttcctccgcGAAATGGACATCACTGCCAAGATGGAAATAAGCGTAAACCAGCAGCAGTTCATGCCACCTGCCTGCTTTTTCGCCTCTCAGAGCATCCAGCTCAGTCCGACCGACAGCCAGTGCAGCAACAAGTCCGCGTCCAAGCAGGCGAAAAGGCAGCGCTCGTCCTCTCCGGAGCTGCTCCGGTGCAAAAGGAGGCTCAACTTCGCCGGCTTCGGGTATAGCCTGCCCCAGCAGCAGCCGCACGCGGTGGCCAGGCGCAACGAGAGAGAGCGCAACCGGGTAAAGCTGGTGAACAACGGCTTCGCCACTCTCCGCGAACACGTTCCCAACGGAGCGGCGAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCGGCTGTGGAGTACATCCGCGCGCTCCAGCAGCTTCTGGACGAGCATGACGCGGTGAGCGCGGCGTTCCAGTCAGGCGTCCTGTCACCCACCATCTCCCAAAATTACTCCAACGACATGAACTCTATGGCCGGCTCGCCCGTGTCCTCTTACTCCTCGGATGAGGGCTCCTACGACCCTCTGAGTCCAGAAGAGCAAGAGCTCCTGGACTTCACCAACTGGTTTTGAACGTTCGCGAAATCAAGGAAATGCCTAAAAATCGCAGCACTCGCTTGGGAGGAACCCGGGTGTCCTCCAAGAACACAAAGCACTGCGTTTGCGCTTCGGTCCGGTTCGGATAGACTCGAATCCGCACCCAGAGATGGCCCACACAAACCGGCAAACCACGGGGTCCCGAGTGTCAAAGAGCCAAAGGACTAAAAGGGAAGAGCGGGAGTCCAGTCCTTCCAGCGCATCCGCCCaagaaatctatttttaaaatgactttccaCTACACTGTGGCGCGtatactaaaaacaacaacaataagcAAAACGTTGTTCTTTTACCTATGCTAATGTAATCAAAGAAGGTTTGCCCTGATTGACCCCTCTCACAAACTCTAATATGCTTCCAACTTGGCGAATTTTATTATATGAAGTTCTATTTGTATaaaacatgttgtttttttgaaatatattaagctatttttgtatgtaagagatttatagatgtttttgtacgcgttcattttaatatgtatctATTTTTGACCTATAGCCTGCCGTAAATCGCTCATTACCTCTCGCTTATTCAGACTTCTAGTCTCAAATGCATCGCAGCTGGCAATTCCCTTTACGGTCGTGGAGGTTTATAAGAGTTTCGATTTCAACACCAACGTGTCTTATTTAATAGGAATACTAATTGCAATGGTGATGCGACTCGGGAGTGATCAAAGGTTATGCAGCTATTGTCCAAACGGAGGTGTTTTGTGTCTCCACACTGCCTGTTCCACTTTGCCTTTACAATGCTGGGTTTTGCATCTCAGAAAATAAGAATATGCCTTATCTCCATATTTTCTACAGTTTAGTCTCATAATAAAAGTTTGGAAAAGAAA
>XM_043236991.1
cgttaaaaaaaaatccctgttAGTGAACGCACTTGCTTAATGCGTTTTAAAGGGGATTTGAGCGTTCAAGATTGGGAAAGCGCGCAGCATCCCGTTATTAATAATCATCACTACCTGTTGATTTTCTGTTTGTGACCGCACGGTGGCACCAAGGAGCCTAAAAGCGACCGGGACTGGGTTAAACGATACGCCGATCTCAGAAAgatatgcttttttaattgGTTTGTTTCCCGCCGGAAACAATCTGTCGGAATTCGGACGCGAAATGCAGCAGTTAGCTAACGAATAGTGAGTTAGCTAACGAATAGTGAATTAAGTCGAGTCCAAAACGAgctctattttttattattattcattagtGACCTTTTTGTCGTGTTTTGtactgaaacacaaacaaagtcGTACATCCTCAGGTGAGCGCGGCCCCTGCCTGATTGTGGTCAGGTAATGCCAATACGCTTCTGCTAATTGCACTTTGTTATGTTTAGCTAAACTTTTCTTCAACTACTAGCGAGCTGCGAAGGCCTGCTCGCACACGGTTCCTCATTTTGATGACTTTTGCGCGGTTCAAGTCTTAGGGGGCACTTTTAATAACGTAGACCGTGCACACAGTCTGCATTTAGCTCATAGGCTCTAAAAGCAGATTCgcgtatttttttatttgtgtttaataaatcGATGTTTGCGCACAGGCGTGTGCTTAGGCGTGTGCGAGCCATTCGTGACTTCGCCACCAGGTGGCGGGAGTACAGGCCCATGACCAAACCTGAACGAGAGAAGCCCAACAAAGCTAAGACTCGTCTTAAAGGAACATCTGGACACCGTTTCTCTTCAGCGGAGCCTGCTGATGCTTCCAGTGGCAGGAGCGGCACGCGCCCGGCGTACGCAACGCAAGCGCATCTCTGGGGGCGTGGTCAGGAGGAACGCGCGGCGGGCCGCCGGCGTATTGAAAAGGCCGCGCTGTTACCATCTCACAACTCAGAGCAGGTCGAGAGTCCGGTGCAACCCCTGCCCATTGAAGCCACACGTGAACGCCACGAGCAAGACGCACGGCCGCTGGGCATCCCAAAGAAAACTTTTTGCGTTTTTTCTCGCtccttttcttttcctccgcGAAATGGACATCACTGCCAAGATGGAAATAAGCGTAAACCAGCAGCAGTTCATGCCACCTGCCTGCTTTTTCGCCTCTCAGAGCATCCAGCTCAGTCCGACCGACAGCCAGTGCAGCAACAAGTCCGCGTCCAAGCAGGCGAAAAGGCAGCGCTCGTCCTCTCCGGAGCTGCTCCGGTGCAAAAGGAGGCTCAACTTCGCCGGCTTCGGGTATAGCCTGCCCCAGCAGCAGCCGCACGCGGTGGCCAGGCGCAACGAGAGAGAGCGCAACCGGGTAAAGCTGGTGAACAACGGCTTCGCCACTCTCCGCGAACACGTTCCCAACGGAGCGGCGAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCGGCTGTGGAGTACATCCGCGCGCTCCAGCAGCTTCTGGACGAGCATGACGCGGTGAGCGCGGCGTTCCAGTCAGGCGTCCTGTCACCCACCATCTCCCAAAATTACTCCAACGACATGAACTCTATGGCCGGCTCGCCCGTGTCCTCTTACTCCTCGGATGAGGGCTCCTACGACCCTCTGAGTCCAGAAGAGCAAGAGCTCCTGGACTTCACCAACTGGTTTTGAACGTTCGCGAAATCAAGGAAATGCCTAAAAATCGCAGCACTCGCTTGGGAGGAACCCGGGTGTCCTCCAAGAACACAAAGCACTGCGTTTGCGCTTCGGTCCGGTTCGGATAGACTCGAATCCGCACCCAGAGATGGCCCACACAAACCGGCAAACCACGGGGTCCCGAGTGTCAAAGAGCCAAAGGACTAAAAGGGAAGAGCGGGAGTCCAGTCCTTCCAGCGCATCCGCCCaagaaatctatttttaaaatgactttccaCTACACTGTGGCGCGtatactaaaaacaacaacaataagcAAAACGTTGTTCTTTTACCTATGCTAATGTAATCAAAGAAGGTTTGCCCTGATTGACCCCTCTCACAAACTCTAATATGCTTCCAACTTGGCGAATTTTATTATATGAAGTTCTATTTGTATaaaacatgttgtttttttgaaatatattaagctatttttgtatgtaagagatttatagatgtttttgtacgcgttcattttaatatgtatctATTTTTGACCTATAGCCTGCCGTAAATCGCTCATTACCTCTCGCTTATTCAGACTTCTAGTCTCAAATGCATCGCAGCTGGCAATTCCCTTTACGGTCGTGGAGGTTTATAAGAGTTTCGATTTCAACACCAACGTGTCTTATTTAATAGGAATACTAATTGCAATGGTGATGCGACTCGGGAGTGATCAAAGGTTATGCAGCTATTGTCCAAACGGAGGTGTTTTGTGTCTCCACACTGCCTGTTCCACTTTGCCTTTACAATGCTGGGTTTTGCATCTCAGAAAATAAGAATATGCCTTATCTCCATATTTTCTACAGTTTAGTCTCATAATAAAAGTTTGGAAAAGAAA
>XM_043236992.1
cgttaaaaaaaaatccctgttAGTGAACGCACTTGCTTAATGCGTTTTAAAGGGGATTTGAGCGTTCAAGATTGGGAAAGCGCGCAGCATCCCGTTATTAATAATCATCACTACCTGTTGATTTTCTGTTTGTGACCGCACGGTGGCACCAAGGAGCCTAAAAGCGACCGGGACTGGGTTAAACGATACGCCGATCTCAGAAAgatatgcttttttaattgGTTTGTTTCCCGCCGGAAACAATCTGTCGGAATTCGGACGCGAAATGCAGCAGTTAGCTAACGAATAGTGAGTTAGCTAACGAATAGTGAATTAAGTCGAGTCCAAAACGAgctctattttttattattattcattagtGACCTTTTTGTCGTGTTTTGtactgaaacacaaacaaagtcGTACATCCTCAGGGAGTACAGGCCCATGACCAAACCTGAACGAGAGAAGCCCAACAAAGCTAAGACTCGTCTTAAAGGAACATCTGGACACCGTTTCTCTTCAGCGGAGCCTGCTGATGCTTCCAGTGGCAGGAGCGGCACGCGCCCGGCGTACGCAACGCAAGCGCATCTCTGGGGGCGTGGTCAGGAGGAACGCGCGGCGGGCCGCCGGCGTATTGAAAAGGCCGCGCTGTTACCATCTCACAACTCAGAGCAGGTCGAGAGTCCGGTGCAACCCCTGCCCATTGAAGCCACACGTGAACGCCACGAGCAAGACGCACGGCCGCTGGGCATCCCAAAGAAAACTTTTTGCGTTTTTTCTCGCtccttttcttttcctccgcGAAATGGACATCACTGCCAAGATGGAAATAAGCGTAAACCAGCAGCAGTTCATGCCACCTGCCTGCTTTTTCGCCTCTCAGAGCATCCAGCTCAGTCCGACCGACAGCCAGTGCAGCAACAAGTCCGCGTCCAAGCAGGCGAAAAGGCAGCGCTCGTCCTCTCCGGAGCTGCTCCGGTGCAAAAGGAGGCTCAACTTCGCCGGCTTCGGGTATAGCCTGCCCCAGCAGCAGCCGCACGCGGTGGCCAGGCGCAACGAGAGAGAGCGCAACCGGGTAAAGCTGGTGAACAACGGCTTCGCCACTCTCCGCGAACACGTTCCCAACGGAGCGGCGAACAAGAAGATGAGCAAAGTGGAGACGCTGCGCTCGGCTGTGGAGTACATCCGCGCGCTCCAGCAGCTTCTGGACGAGCATGACGCGGTGAGCGCGGCGTTCCAGTCAGGCGTCCTGTCACCCACCATCTCCCAAAATTACTCCAACGACATGAACTCTATGGCCGGCTCGCCCGTGTCCTCTTACTCCTCGGATGAGGGCTCCTACGACCCTCTGAGTCCAGAAGAGCAAGAGCTCCTGGACTTCACCAACTGGTTTTGAACGTTCGCGAAATCAAGGAAATGCCTAAAAATCGCAGCACTCGCTTGGGAGGAACCCGGGTGTCCTCCAAGAACACAAAGCACTGCGTTTGCGCTTCGGTCCGGTTCGGATAGACTCGAATCCGCACCCAGAGATGGCCCACACAAACCGGCAAACCACGGGGTCCCGAGTGTCAAAGAGCCAAAGGACTAAAAGGGAAGAGCGGGAGTCCAGTCCTTCCAGCGCATCCGCCCaagaaatctatttttaaaatgactttccaCTACACTGTGGCGCGtatactaaaaacaacaacaataagcAAAACGTTGTTCTTTTACCTATGCTAATGTAATCAAAGAAGGTTTGCCCTGATTGACCCCTCTCACAAACTCTAATATGCTTCCAACTTGGCGAATTTTATTATATGAAGTTCTATTTGTATaaaacatgttgtttttttgaaatatattaagctatttttgtatgtaagagatttatagatgtttttgtacgcgttcattttaatatgtatctATTTTTGACCTATAGCCTGCCGTAAATCGCTCATTACCTCTCGCTTATTCAGACTTCTAGTCTCAAATGCATCGCAGCTGGCAATTCCCTTTACGGTCGTGGAGGTTTATAAGAGTTTCGATTTCAACACCAACGTGTCTTATTTAATAGGAATACTAATTGCAATGGTGATGCGACTCGGGAGTGATCAAAGGTTATGCAGCTATTGTCCAAACGGAGGTGTTTTGTGTCTCCACACTGCCTGTTCCACTTTGCCTTTACAATGCTGGGTTTTGCATCTCAGAAAATAAGAATATGCCTTATCTCCATATTTTCTACAGTTTAGTCTCATAATAAAAGTTTGGAAAAGAAA

Function

symbol description
ascl1a Enables DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in hindbrain morphogenesis and regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including animal organ development; epithelial cell differentiation; and regulation of gene expression. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in several structures, including digestive system; nervous system; neural tube; neuronal stem cell; and optic cup. Human ortholog(s) of this gene implicated in congenital central hypoventilation syndrome. Orthologous to human ASCL1 (achaete-scute family bHLH transcription factor 1).
ascl1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific; E-box binding activity; and bHLH transcription factor binding activity. Involved in several processes, including neuron differentiation; regulation of transcription by RNA polymerase II; and response to retinoic acid. Located in nucleus. Implicated in congenital central hypoventilation syndrome.

NR:

description
PREDICTED: achaete-scute homolog 1a

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0061195 taste bud formation biological_process
GO:0002070 epithelial cell maturation biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0061549 sympathetic ganglion development biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0021984 adenohypophysis development biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0000989 obsolete transcription factor activity, transcription factor binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09067 ASCL; achaete-scute complex protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU40250 False 1180 lncRNA 0.45 3 8874717 8885145
XM_043236989.1 True 2808 mRNA 0.48 3 8885118 8890176
XM_043236990.1 False 2277 mRNA 0.49 4 8885118 8890176
XM_043236991.1 False 2576 mRNA 0.49 4 8885118 8890176
XM_043236992.1 False 2246 mRNA 0.49 4 8885118 8890176

Neighbor

gene id symbol gene type direction distance location
nup37 nup37,LOC107590136,LOC107695872,LOC107664874,LOC107744917 coding upstream 8799 8855404 ~ 8865918 (+)
pmch pmch,LOC107659836,LOC107591230 coding upstream 31467 8841744 ~ 8843250 (+)
igf1 igf1,LOC107659835,LOC107725558,LOC107664880 coding upstream 42085 8821730 ~ 8832632 (+)
bcat1 bcat1,LOC107590116,LOC107725514,LOC107664876,LOC107744911,LOC107587341 coding upstream 59702 8804192 ~ 8815015 (+)
dnai7 casc1,LOC107725557,LOC107659833,LOC107744936 coding upstream 94639 8774288 ~ 8780078 (+)
recql recql,LOC107695875,LOC107590167,LOC107725624,LOC107587911,LOC107744919,LOC107664885 coding downstream 63771 8953947 ~ 8961233 (+)
itfg2 itfg2 coding downstream 72430 8962606 ~ 8970594 (+)
cwf19l1 cwf19l1,LOC107695878,LOC107725658,LOC107744920,LOC107664857 coding downstream 119986 9010162 ~ 9015256 (+)
gnptab gnptab,LOC107695880,LOC107664853,LOC107725516,LOC107725515 coding downstream 134301 9024477 ~ 9041856 (+)
LOC122343441 LOC107553872,LOC107593900 coding downstream 427404 9317580 ~ 9323622 (+)
G27162 NA non-coding upstream 121868 8752438 ~ 8752849 (+)
G27121 NA non-coding upstream 369621 8471675 ~ 8505096 (+)
LOC122343529 NA non-coding upstream 497408 8374654 ~ 8377309 (+)
G27084 NA non-coding upstream 543415 8278559 ~ 8331302 (+)
G27073 NA non-coding upstream 575718 8225458 ~ 8298999 (+)
G27301 NA non-coding downstream 62746 8952922 ~ 8953122 (+)
G27345 NA non-coding downstream 163845 9054021 ~ 9057297 (+)
G27347 LOC107590965,LOC107695883 non-coding downstream 167692 9057868 ~ 9058292 (+)
G27352 NA non-coding downstream 178755 9068931 ~ 9076136 (+)
LOC122342713 NA non-coding downstream 187842 9078018 ~ 9081866 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other upstream 326715 8533816 ~ 8548002 (+)
spx spx,LOC107589995,LOC107744902,LOC107694690,LOC107596170,LOC107725633 other upstream 382779 8487911 ~ 8491938 (+)
stmp1 NA other upstream 390886 8482890 ~ 8483831 (+)
G27079 NA other upstream 625494 8247912 ~ 8249223 (+)
G26993 NA other upstream 736278 8137738 ~ 8138439 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other downstream 125665 9015841 ~ 9018333 (+)
apaf1 apaf1,LOC107744928 other downstream 148462 9038638 ~ 9221046 (+)
G27360 anks1b other downstream 272971 9163147 ~ 9227212 (+)
cfap54 cfap54,LOC107695893 other downstream 491366 9381542 ~ 9395757 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other downstream 613904 9504080 ~ 9522033 (+)

Expression


Co-expression Network