G27240


Basic Information

Item Value
gene id G27240
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8476164 ~ 8478311 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU40326
GAAACATTACACaaacatactaaatataaatactaaattgttaaaatgagataaagctaaataatcaataaagatatgaattaaaaattcaaaaagacAAATACTATGATCGCATATAAAATAGCACTAGTTTAGATACGAGAATAAACGCTGGTgatgtatttaataacaatcaatccatttttttccatttgaatgTCAGGACACCTACAGGAAGGAGAGTTGTGTTTGCTGGACGAATCGCTGGTGAAGCTCTGGCGAGAACAGTCCACGTCGCTGGACGAGGTCAGACTGTCGCACCTTTCAGAGGACTCCGTGTCGCTGTTCTGGTCCTCGCTGGCCACCGTAGAGGTGGAGGTGGGACGCTCGTCGTTCAGAGGCATCGTGAGGGGCTTCTGCCAATGAAGCAGAAAGGTACTTGGAAAGGTCTTTTTGAGACGAACCTGAAGCCGGCGCTTTTAGTGGGAAACGGGGCAACGACTTCTGTGACAATAGGATAAAGTTAGACCTGGCACACTTTCGGTGCTGGAAAATTCCACAAGGATATAACGCTTCATTGACATAACAAAGAAAAGAGACTCGCGAAGGCAAGGGGAAATAAATGGGCAACAAAAGGGCTCAGTGATATTCATGTGGCCCACAAAGAgacattgtgttttaaatgtgattcaAGCGTTGACCGCTGCTGTCTCTTGGGCAACAGATAACGGCAGATCTTTAAAAGCAAACCGATCTCGTTACACTCCTTTGCCTTTATAGGCTTCACTACACACCTGTTTCCTAACGTAACAGAGTAAGCGCTAGTCTTTTCAGGCCGTCGAGTCAACCATGTccttcattaattaataaaacatgcattcagATACTAAGCAGGATATTAACCCTACTTATTATTCTTAATGATCTGACAAAACTGCTTGTTTGACTGTCTTGTAATTACAGGTTTATCCAGCTCATGTGGATTAATGTGGCTTAATCTGCTACAATAGGAATACCACAATTTTCTCCTGGTGCCACcgttaaacaaaaactatttgaaaatgcatCGATTCTCTGCACATTCTTGTTGAGTAGTTATAAAACAATGATGTCAGTTCTTTCACTATTCAAACCTTTCAgacattatttactttgattataaggggaaataaatatttgaagtcTCTTTTTACATTCCACcgaagaaaaaaagaagttgttctggtttggaacaacatgagggtaagaATGCTGTTGCTGATAGCTAGAattaaaactacttaaaaactttttctttaattaaagctgaaattaaatagGATATTAATGACAGTTTATAACTCGTATCTTTTGGTGACGTCTtacaactaaaacaaatataaagaaatacaacatgaaagacaaaagcacaaaggaaaactattaaataaattaaaatggaaactgaaaaaaaaatgaaaataatgttattacatACTGTGATCAtgtaaaacagtacaaaaaaataacacatttcagtttaagtaaatcataaataaattatcatttttgagtgaatacTTTTTTCTGTCCCATTAAGATCATTTTGccccttaataaaaaaaaagtcactatAACTCGGTCAAACACACTCATTTGGTTGAATTTATTCcttgttatttttagtgttattgtgatttttaaaacataatgggGCGAATCGTATATCTGAATTTTTTCAAGTGCTGTGGTCTCAAATCTATAGCAGTTAACACAGATGCCAGTACTTCCCAGTATGGGTTACAGAATAAAAACCACTGACATAACATGTTCAAGCTCTTCCAAAAGAGGCTATCTATTTTGAGCATATAGGGGGACCTCTATTAGGTTCAGTAGGTCTCGTGGTAAAAACAGAAACCCATGCACATCCTCAGCCAGGTTTAAATTAGGAGCGACCGATGACAGCACCACTGGCACCGGTTACAGCTCGTGCTGCTCTGGGCCCTAAAAGGAGGtgctgtaacacacacacacacacacacacacacacacacacacacacactgcgctcAGCTGCTCTGCACACGTGACCTTATCTTCAGCACACAAACAAGGACAAAACACGAGCAAACTGTCAAAGCAGAGGAGCAGCCGAACTGGACTTTCCGG

Function

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40326 True 2127 lncRNA 0.38 2 8476164 8478311

Neighbor

gene id symbol gene type direction distance location
dennd5b dennd5b,LOC107659847,LOC107725568,LOC107744899,LOC107694693 coding downstream 17162 8424095 ~ 8459002 (-)
sinhcaf fam60a,LOC107694695,LOC107586002,LOC107725569,LOC107744898,LOC107659848,LOC103028480 coding downstream 53259 8415293 ~ 8422905 (-)
caprin2 LOC107725657,LOC107744896,LOC107694696 coding downstream 61835 8405825 ~ 8414329 (-)
btg1 btg1,LOC107585922,LOC107725570,LOC107659850,LOC107744895,LOC107690792,LOC107565641 coding downstream 101652 8367536 ~ 8374512 (-)
LOC122342541 LOC107725512,LOC107565629,LOC107690781,LOC107744891,LOC107585840 coding downstream 150318 8321454 ~ 8325846 (-)
gys2 gys2,LOC107659841,LOC107694689 coding upstream 12048 8490359 ~ 8501938 (-)
ldhba ldhba,LOC107659842,LOC107589975,LOC107744904,LOC107725606,LOC107694687,LOC107586539 coding upstream 26130 8504441 ~ 8509566 (-)
tmpoa tmpoa,LOC107694685,LOC107744905,LOC107725605,LOC107590013 coding upstream 39723 8518034 ~ 8528270 (-)
LOC122342917 strap,LOC107725662,LOC107590065,LOC107744907,LOC107586834,LOC107659840,LOC107694684 coding upstream 50062 8528373 ~ 8532454 (-)
sox5 sox5,LOC107590035,LOC107725540,LOC107744909,LOC107587062 coding upstream 100740 8579051 ~ 8752834 (-)
LOC122342531 NA non-coding downstream 229655 8200177 ~ 8246509 (-)
LOC122342218 NA non-coding downstream 306577 8168273 ~ 8169587 (-)
G27063 NA non-coding downstream 349340 8126342 ~ 8126824 (-)
G27050 NA non-coding downstream 352304 8123114 ~ 8123860 (-)
G27051 NA non-coding downstream 354456 8121346 ~ 8121708 (-)
G27249 LOC107725541,LOC107659837,LOC107590048 non-coding upstream 55520 8533831 ~ 8536676 (-)
LOC122343385 NA non-coding upstream 283788 8762099 ~ 8774171 (-)
G27263 NA non-coding upstream 325844 8804155 ~ 8805230 (-)
G27257 NA non-coding upstream 326933 8805244 ~ 8809184 (-)
G27253 NA non-coding upstream 331456 8809767 ~ 8815012 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other downstream 8136 8460506 ~ 8468028 (-)
LOC122343432 NA other downstream 226237 8247911 ~ 8249927 (-)
G26951 NA other downstream 917711 7555115 ~ 7558453 (-)
si:dkey-261e22.4 NA other downstream 1255253 7214334 ~ 7220911 (-)
il22 NA other downstream 1735423 6737641 ~ 6740741 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other upstream 35319 8513630 ~ 8517583 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other upstream 391904 8870215 ~ 8874598 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other upstream 413708 8892019 ~ 8941403 (-)
klhl42 klhl42 other upstream 525949 9004260 ~ 9009304 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other upstream 793661 9271972 ~ 9300179 (-)

Expression


Co-expression Network