G27257


Basic Information

Item Value
gene id G27257
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8805244 ~ 8809184 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU40372
tttttaaattaaagtttacatttttattcttataaaaTCTGACAATAAACCttgattaagaaataaaaaaatcaacattaatatgtatatatatatatatatatatatatatatatatatatatatatatacacacacatccacacaaggcttttttttttttttttaataaatttaactataaacaaaaatgcaaatatgcaaaaaatattacgTGTTTAAGTGTCTCTAAAGTGTtccaaaatgctgttttgtcCTGCTGCTCATCAACTTCCTTCCTTTGTATCTGTCTTCATTCATGGATTgtcaattaaaatgttactaGCTCTTTGAGACGATGTTTATGGTGCATTGTCAGGTGGCGACTCATAAAGCAGCACGAATGTGAAAACCGTGCTGTCTGACACCTCAGTTTACGAGTGCTTGGTGACTACCTGACTATAAATATGCTAGATCCAATTGAACGACCGTCTGTAATCTCTGTTTGAGTCTCGGGAGCAATCATGTTGGCAGGTTTACAGTGGTGGTCAACAGCAGtactattattgttgttgttgatgacGGTGTTTTGAGTTCTTTAGTTAGCATGCTAATTAGTACTCTTACATAGTATAAAGCATGATTGGAAACAGTGCTTTCTTAGAGAGCTATAATTTTGTTGAGGTTTCGCTGTAATGAGAGCTGCTTTGTGGCCATCACCAAGTCATTGCCGCGTGTGACCTCGTATAGCCCCTTCAAGAAGCTTAAATGTGATTATCCTCATCAATAGACAAACAATGCTCTGCACGGCGCCATGATGAACTCAAAAATAAACACCTCTGCAAAAAGCCTTATTGTAGCAGCAGCTCACGTGTGTCTGCCTTTTGATCTAAGACTTTGCACTTGAGGGACTGGAAAGTATGTTGAATGTCCATTCGAGGTACACAAAAAGGAAGGATGCAAAACGCATCGAACTATAATTATTCTCCCATCAATTTGTTTCTTCcattcaaaaaacacaaaaagagaattCAACAGAATGTACTTGTTGCTCTTTCCCATGCAATTACAGTGAATAAGGGACTGGAAGAAGCATGTATCATACATTTTCGGACGTGCCATAGTTAAAAAACAGCAATGGCTGACTTTAAcgaatgcatcttttttttctgaatcatTTCAGTGAATCAGTTGATGTGGTTACATTATGCTTTCAGATTCAACTGAATCTCAATGTGTTTCTTGCACAGATCTATCACATACTTTATGATATATTGCACAATTCTATAGACTATGTTTAGGATATTTAATTGTGcttgtgtgtcatttttaaagcatgaaagCTTAATTGTCCATTCGCtgtaatgcaagaaaaaaagaccaACATATTCCATTTTTATGTTCTGAAAAATCATATGGGTTTATAACAGCATAATGCTAGATCATTCCCTCATGCGTTTACTATAAATGCTCTAATTTTGAAAGCAGCCACCGACCTGAGGCGTGATTGCAGATGTTTGACTATAACGCTACATTTACTTTATGGCAACGGTAAGATTTAGCCTGTGTTGAAAAGAACTCAGGCTTAATCACCACCTGAGTCACAGAAAggtagagacagacagagagcatGCCCAAAGCCAAGCCGAGCTTGATTGACAGGGCTTACAGTGATCTGAGAGACTGGATTCTCTTTCACTCAGCACGGGACCTCTTGGAAGAGATAGGACCTTTCTGACAACTGCCAGCAAGAGGGGTCCAAGGTCACATTTCGGAGTTATGGAGGTGAAAATATTCTAAGAGAAAAGGGGTCTACTATGAGTCGACCCAAGTCTTTAGGACTATACAGACACTCAGAATGCATAGATAGGCTATGAATTTTGCAAACAGTATGCGGACACCAGGACAACTATAAGAAAAGTGGATTCATTGAAGAAATAATCAAGTTTTGACAGCGGAGGAGAGTTTCTAATTATCTGTATATCAATCAAACATCAGAATGATGCCACCGGACATTTCGCTAAAGGCAAGTGCTGTtcattactatataaatatacatatatatataatatgcCTTACCTTAAAGCTAGAGGCATTGCCAGCCACATCATTATTTTCAAGTacctaaaaagaaacaaaaatacaacatataatataatgggCATCATCATATTTTAGGTTGGATTATACAAATAGATGATATAATTTGGTACATTTCTGAAGTTCTCTGGTGTTTAAAGTACCTAAAAAAAGTGAAGGAACGTAAATCCTTTTCTCTGATCTAATATTTATGattgaataaataagcaaagatgattttacatttctatGCTCTCAACAATACCTTACAAAATATCTAGTATGTAACTTAATTGTTAGGCTAAACAGctgagatgtaaaaaaaaaaaaataatacattgtaaAGCATAGCAAAGTATAGATAGTGTCAAAATATAGCTCTCATTAAAAACCCAAGAATCCAGCcaatgcataaacatttgggtGAAAGCAATCTCTGTCTTGAATccgaaacctttatttttaggagAGCTGTTTATAGAGTGATCACCAACCGAGTTTAAGTGTTCAGCAACAGCTATAATTATAACATATTTCTTTAAGGTCAAAGACTCTGCTGCAGTAGTTTCGTCCAAATACAGTTTACTCTGAGCTGGACTCAACGTGTACTGCAGAACATTAGCCGTGAGCATCACAGGTTTGCGATCTCggtgaacacaaaaaaaaattaaacattcaagTCACGATGACCTGTGAAAAATACACTCTGTACTTCGGAGGTCTAAATGAAGaagtaaaaagtattattttgcCTTAGAAATGCAACTTGAGAAATGCACTCAAGCAATGTGCAAATTATCCAAAATTAGACATATGTATATGGTGACTTTATAAATTCAACCTTTTTACTTACTGTAATTTTCAATTGCCCTAGATCCCTAAtccaatgaaacaaacaaaattaataagtACCGCAAAGAAGTACTTTACGCCCCGATGAACTCACCCACTTGGACATCATCACGTTCGGTCCTGAAATGATCTTGAAGCGGCTCGAAGCATGAAATGATATGTGAGTGAGCTGGTTTTTAGTGACCAATCAGCTAGGTTGAATTAAAGGCACACCTCCATTTAGTGACCTTCATTACACTTGCAATGTTTACAGCAGTTTACACTTTGAGGTCGCAGCGATCTACGAGTGTAACCTCGCAGCGCGCTCACTGTGTGCTCATATGACGTGATGGCACAGTGAGCTGAAAGTGTAAACTCACCGTGAGCTCATAATGTCAGACCATTGTGATAACGCTGTGATAAACTCTCGGTCCAttaggttctttttttttcttttagagtGAATTCGCTCTAGTGCTGGGAGATATTCTATTTCAATATAACCAGGTTGAATCACTCacacagtatgaaaaaaaaaataacagcactaGTGCCTAAACCaatggttcccaaccggtgtgccgcggcactaaggggtgccgtgagatcttttgagggtgccgccaaaatttcaacaaaatttttttattaaggcagaatcagtgtaaacagtattctcatatcatctaggactaggtataaggtgttgttgcatgcaaactctcgaaatgaaacaaataaataaataataataaaaaagctacggagattttaaatatctatttccttataagggtgccgggaacttttgaaaggctttccaagggtgcctcaaacaagaaaaggttgggaaccactggccTAAACAATGTAGACAGCATCATGAATAACgtagattatattttatttccatcaacaaattatttttaaaaatctgattccttttgtttattatatatatatatatatatatatatatatatatatat

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0031224 intrinsic component of membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40372 True 3878 lncRNA 0.36 2 8805244 8809184

Neighbor

gene id symbol gene type direction distance location
LOC122343383 LOC107659831,LOC107744910,LOC107664834 coding downstream 1404 8780290 ~ 8803840 (-)
sox5 sox5,LOC107590035,LOC107725540,LOC107744909,LOC107587062 coding downstream 52410 8579051 ~ 8752834 (-)
LOC122342917 strap,LOC107725662,LOC107590065,LOC107744907,LOC107586834,LOC107659840,LOC107694684 coding downstream 272790 8528373 ~ 8532454 (-)
tmpoa tmpoa,LOC107694685,LOC107744905,LOC107725605,LOC107590013 coding downstream 276974 8518034 ~ 8528270 (-)
ldhba ldhba,LOC107659842,LOC107589975,LOC107744904,LOC107725606,LOC107694687,LOC107586539 coding downstream 295678 8504441 ~ 8509566 (-)
LOC122343226 parpbp,LOC107744914,LOC107659825,LOC107590919,LOC107593393,LOC107664835 coding upstream 34023 8843207 ~ 8857050 (-)
pah pah,LOC107695873,LOC107744915 coding upstream 65528 8874712 ~ 8885016 (-)
nrip2 nrip2,LOC107725649,LOC107695877,LOC107588270,LOC107744921,LOC107664860,LOC107590947 coding upstream 168694 8977878 ~ 9000458 (-)
dram1 LOC107725538,LOC107591237,LOC107695863,LOC107664855,LOC107596679,LOC107744952 coding upstream 209146 9018330 ~ 9023432 (-)
chpt1 chpt1,LOC107590206,LOC107725616,LOC107695881,LOC107744925,LOC107664854,LOC107588513,LOC107085961 coding upstream 232829 9042013 ~ 9048831 (-)
G27263 NA non-coding downstream 14 8804155 ~ 8805230 (-)
LOC122343385 NA non-coding downstream 31073 8762099 ~ 8774171 (-)
G27249 LOC107725541,LOC107659837,LOC107590048 non-coding downstream 268568 8533831 ~ 8536676 (-)
G27240 NA non-coding downstream 326933 8476164 ~ 8478311 (-)
LOC122342531 NA non-coding downstream 558735 8200177 ~ 8246509 (-)
G27253 NA non-coding upstream 583 8809767 ~ 8815012 (-)
G27279 NA non-coding upstream 78002 8887186 ~ 8887953 (-)
G27306 LOC107725624,LOC107744919,LOC107590167,LOC107587911,LOC107664885,LOC107695875 non-coding upstream 151262 8960446 ~ 8961433 (-)
G27417 NA non-coding upstream 194739 9003923 ~ 9004223 (-)
G27425 NA non-coding upstream 214693 9023877 ~ 9024077 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 287661 8513630 ~ 8517583 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other downstream 337216 8460506 ~ 8468028 (-)
LOC122343432 NA other downstream 555317 8247911 ~ 8249927 (-)
G26951 NA other downstream 1246791 7555115 ~ 7558453 (-)
si:dkey-261e22.4 NA other downstream 1584333 7214334 ~ 7220911 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other upstream 61031 8870215 ~ 8874598 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other upstream 82835 8892019 ~ 8941403 (-)
klhl42 klhl42 other upstream 195076 9004260 ~ 9009304 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other upstream 462788 9271972 ~ 9300179 (-)
zgc:193726 NA other upstream 1546527 10355711 ~ 10363566 (-)

Expression


Co-expression Network