th2 (pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952)


Basic Information

Item Value
gene id th2
gene name pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8870215 ~ 8874598 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU40401
gtatgCCCTTTCTAATGAACCCCAGTACAAACCGTTCAATCCAGCTGAGACTGCGGTCCAGCCATACCAGGACCAGTCATATCAGCCTGTTTACTTTGTGTCCGAAAGCTTTGAGGACGCCAAGCACAAGTTAAGGCAGTACTCATCCACAATACAGAAGCCCTTCTCCATTAGATACGATCCCTACACTTGCAGCATGGAGGTTTTGGATGAGCCTTCTAAGATCCAGAATGCTTTAGCGCAGATGAGGGATGACCTGAAGATCTTACATAAAGCCCTTGAGAGGATGGGACAGAAATAAACCAGAGTGCGAGACACAGCATCATCAATAACAACTATTTATTTACGGAAAGCCTTATGAATATTGCTGATTACACGGCGTAAGATCCggtgtttaaatgtatatgtatcaCCTTTAAATGTAACGAAGAGTTCTGTttaccaaaataataaatatctttattttgact
>XM_043236988.1
CGCGTGGAAGTCTGTTTCAGTACCATggagagcagcgcagtctcaaCGCAGTGGTTTTTTTGGTATAATTCACGTCCCTAAAACAAAGGAGACCTGTTATATATTCACGCATTTCCAATAAAGGCCCGTTTAAGCGCTGACCTTTCACAAAAACTAGCGTTTAGCTCAAGTAATTCGTCGCTTCTGGCCGTGAAGCGCCTGTGAAGTGTCACGTGACGCGGCTCTTATTTGGcgcctgcaaaaaaaaacacacaaactcatGACGCACCTGAGCTTAAAATTAGACTTGCATTTGCGcaacacatttacataaagCCCAGCGCGTCCGTGTATAAATTGCAGCGAACGCACGAGTTTTCCTCTCAGCTGCGCTCCTCATTTGGTGTCGATCAATTGGATATATCTATTTTAGATACAGTGACCCGTTCCCCACCGCTCGAGAATCGATGAAGACGGACAGTATAGTGCAAGCCATCCCGCTGAGCGGCAGAAAGCGCAGTCTGATCGAGGACGCGCGGCGCGACCGGGAGAGCGGCTCGTCGTCTCCGGGGCCCTCGCGCTGCGGGGACGGCTTCGTGTTTGAGGAGGAGAGCGGCGGCAAAGGCACGCTCTGCGTCCTCTTTGCGCTCAGAAATGAGAAGAACGCAGGCTTCTTTAAGGCTGGCAAAGTCTTCGAGACTTTTGAGGCCAAGCTCCTCCATTTGGAGAGTCGACCGAGCAGGAAGTCCAAGAAAAGCGCTGGAGATGATCTGGAGTTCTTCATGAGGTGTGAGGTGCACTGCTCCGACACCGACATCTTCATCAACTCCTTAAAAAGAGTCGCAGATGATGTGAGAATAGTGCAGGAAGAAAAACTTCCTTGGTTTCCAAAGACGATTTCTGACCTGGATAAATGCAACCATCTCATAACAAAATATGACCCTGATCTGGACCAGGATCACCCTGGGTTCAGTGATCCAGAATACAGGAAACGAAGAGGAATCATTTCTGAACTGGCTTTCAACTATAAGCATGGCGATCCTTTACCTGTAGTGGAATACACTCCAGAAGAGATTGCCACTTGGAGGGAGGTCTACAGGACTCTGAGCGGTCTGTACCCCACTCACGCCTGCAGACAATTTCTAGAAGCCCTCGCCCAGCTGGAGAGCGAACGCTTGTACGGAGAGGACAAGATCCCTCAGCTAGGAGAAGTGTCTGCTTTTCTCAGAGAGAGGACGGGTTTTCAGCTGCGTCCAGTGGCAGGGCTGCTTTCTGCTCGGGACTTCCTAGCCAGTCTGGCATTTAGGGTGTTCCAGTGCACCCAGTATATCCGTCACCCTTCAGCTCCCATGCATTCCCCTGAGCCtgACTGCTGCCATGAGCTTCTTGGACACATTCCCATGCTTGCTGACAAAGAGTTTGCTCAGTTCTCACAGGAGATTGGACTTGCCTCGCTTGGAGTATCAGACGATGATATCGAGAAACTGTCCACACTGTACTGGTTTACAGTGGAGTTTGGTCTCTGTAAGCAAAATGGTACAGTGAAGGCCTATGGGGCTGGACTCCTGTCCTCATACGGAGAGCTtttgtatgCCCTTTCTAATGAACCCCAGTACAAACCGTTCAATCCAGCTGAGACTGCGGTCCAGCCATACCAGGACCAGTCATATCAGCCTGTTTACTTTGTGTCCGAAAGCTTTGAGGACGCCAAGCACAAGTTAAGGCAGTACTCATCCACAATACAGAAGCCCTTCTCCATTAGATACGATCCCTACACTTGCAGCATGGAGGTTTTGGATGAGCCTTCTAAGATCCAGAATGCTTTAGCGCAGATGAGGGATGACCTGAAGATCTTACATAAAGCCCTTGAGAGGATGGGACAGAAATAAACCAGAGTGCGAGACACAGCATCATCAATAACAACTATTTATTTACGGAAAGCCTTATGAATATTGCTGATTACACGGCGTAAGATCCggtgtttaaatgtatatgtatcaCCTTTAAATGTAACGAAGAGTTCTGTttaccaaaataataaatatctttattttgactACCACAGCGATGCCATTAAGAAGAACTGTTTTCttaaagaacaatttttttttttgccagtatAAAGAACATCTTGTGGAATGGAAAGATGTCAacgaatctttatttttaagagtaatCCTTCAAATTATGAACACAATCATTTCAGTTCCCCCTAAAACACGTAACTCCTAAAATCCAAGAGCCATATCGGAAGGGACTATATCAGAATGCAAATTATTCATAGGCTGTTTAGACCATGTCAATATGAATATgaacacaaaaccaaaataaaca

Function

symbol description
pah Predicted to enable phenylalanine 4-monooxygenase activity. Acts upstream of or within cellular response to estrogen stimulus. Is expressed in several structures, including digestive system; epidermis; eye; optic vesicle; and periderm. Human ortholog(s) of this gene implicated in intellectual disability and phenylketonuria. Orthologous to human PAH (phenylalanine hydroxylase).
th2 Enables tryptophan 5-monooxygenase activity. Acts upstream of or within dopamine biosynthetic process and serotonin biosynthetic process. Predicted to be active in axon; cytoplasm; and perikaryon. Is expressed in head; kidney; liver; and nervous system.

NR:

description
tyrosine 3-monooxygenase-like isoform X1

GO:

id name namespace
GO:0042423 catecholamine biosynthetic process biological_process
GO:0042427 serotonin biosynthetic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005506 iron ion binding molecular_function
GO:0004510 tryptophan 5-monooxygenase activity molecular_function
GO:0004511 tyrosine 3-monooxygenase activity molecular_function

KEGG:

id description
K00501 TH; tyrosine 3-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
TU40401 False 470 lncRNA 0.42 2 8870491 8871056
XM_043236988.1 True 2313 mRNA 0.47 12 8870215 8874598

Neighbor

gene id symbol gene type direction distance location
LOC122343226 parpbp,LOC107744914,LOC107659825,LOC107590919,LOC107593393,LOC107664835 coding downstream 13165 8843207 ~ 8857050 (-)
LOC122343383 LOC107659831,LOC107744910,LOC107664834 coding downstream 66375 8780290 ~ 8803840 (-)
sox5 sox5,LOC107590035,LOC107725540,LOC107744909,LOC107587062 coding downstream 117381 8579051 ~ 8752834 (-)
LOC122342917 strap,LOC107725662,LOC107590065,LOC107744907,LOC107586834,LOC107659840,LOC107694684 coding downstream 337761 8528373 ~ 8532454 (-)
tmpoa tmpoa,LOC107694685,LOC107744905,LOC107725605,LOC107590013 coding downstream 341945 8518034 ~ 8528270 (-)
pah pah,LOC107695873,LOC107744915 coding upstream 114 8874712 ~ 8885016 (-)
nrip2 nrip2,LOC107725649,LOC107695877,LOC107588270,LOC107744921,LOC107664860,LOC107590947 coding upstream 103280 8977878 ~ 9000458 (-)
dram1 LOC107725538,LOC107591237,LOC107695863,LOC107664855,LOC107596679,LOC107744952 coding upstream 143732 9018330 ~ 9023432 (-)
chpt1 chpt1,LOC107590206,LOC107725616,LOC107695881,LOC107744925,LOC107664854,LOC107588513,LOC107085961 coding upstream 167415 9042013 ~ 9048831 (-)
mybpc1 mybpc1,LOC107695883 coding upstream 174923 9049521 ~ 9082049 (-)
G27253 NA non-coding downstream 55203 8809767 ~ 8815012 (-)
G27257 NA non-coding downstream 61031 8805244 ~ 8809184 (-)
G27263 NA non-coding downstream 64985 8804155 ~ 8805230 (-)
LOC122343385 NA non-coding downstream 96044 8762099 ~ 8774171 (-)
G27249 LOC107725541,LOC107659837,LOC107590048 non-coding downstream 333539 8533831 ~ 8536676 (-)
G27279 NA non-coding upstream 12588 8887186 ~ 8887953 (-)
G27306 LOC107725624,LOC107744919,LOC107590167,LOC107587911,LOC107664885,LOC107695875 non-coding upstream 85848 8960446 ~ 8961433 (-)
G27417 NA non-coding upstream 129325 9003923 ~ 9004223 (-)
G27425 NA non-coding upstream 149279 9023877 ~ 9024077 (-)
LOC122343442 NA non-coding upstream 455409 9330007 ~ 9341739 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 352632 8513630 ~ 8517583 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other downstream 402187 8460506 ~ 8468028 (-)
LOC122343432 NA other downstream 620288 8247911 ~ 8249927 (-)
G26951 NA other downstream 1311762 7555115 ~ 7558453 (-)
si:dkey-261e22.4 NA other downstream 1649304 7214334 ~ 7220911 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other upstream 17421 8892019 ~ 8941403 (-)
klhl42 klhl42 other upstream 129662 9004260 ~ 9009304 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other upstream 397374 9271972 ~ 9300179 (-)
zgc:193726 NA other upstream 1481113 10355711 ~ 10363566 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other upstream 1610324 10484922 ~ 10522249 (-)

Expression


Co-expression Network