G27279


Basic Information

Item Value
gene id G27279
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 8887186 ~ 8887953 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU40406
AAAAAGGTTgatgaacacaaaacaaagctACAATATACATTGTTCGCcaacaaatgtaacattaatgCACGTGACAACTTGCCCCGACTTGTcgtttatgaaaaaaaaactatttctgaaaTCAACATAGCTCGCCATACTATTTAATCACCTCCAAACCCTGCCACATAAGGCTCTCTGCTTATCAAATAAACCAGATCTTAAAGCAAACACAACAAATAATTTGCAACCGCTGTCGCGCTTAAGACGAATCGGCTGAGAGGTAAATAAACTCATTGAACGCGCTCGGCTTTCGTCGGGCTCAGGTGTAGCTTGGTTATGAATTCACACTCGTCGCGGCAATTATTACACCGTTAACGCGTTACAGCCACGCGATATTGTTCCACGCGGGCGATCTTTGTCCGCGCGAGATAAATTTGGCCGGTCATTATTAGAAATCATCACAGCTGGAAAGGCGGAACGGATGGGTTGTTTTGCGGGCgcgcttttttttcttttaaaaaaacctcacaCCTTATTCGCTCTATTTGCTTCCAGTGCATCTCTCGATTAATTTCGCCTCTTTCACAGCGCACGATAATGGCGCGTTGCTTTCAACCAACTTCGTCTGAATGACTTTGCCTGCGCCGGTTTTGTGTGCGCGCACGACGCACGCGGAGCGCAGCGCGAGGGCGGGGGCTGGAAATTGTGTAATTTCTCTTAGTTGGCCGAGGCATTCAAGATCAGGCCAGCATTCAAGCACCCAGCCCCCTCCAACTTTCCTTTCtc

Function

GO: NA

KEGG:

id description
ko00670 One carbon pool by folate

RNA

RNA id representative length rna type GC content exon number start site end site
TU40406 True 768 lncRNA 0.46 1 8887186 8887953

Neighbor

gene id symbol gene type direction distance location
pah pah,LOC107695873,LOC107744915 coding downstream 2170 8874712 ~ 8885016 (-)
LOC122343226 parpbp,LOC107744914,LOC107659825,LOC107590919,LOC107593393,LOC107664835 coding downstream 30136 8843207 ~ 8857050 (-)
LOC122343383 LOC107659831,LOC107744910,LOC107664834 coding downstream 83346 8780290 ~ 8803840 (-)
sox5 sox5,LOC107590035,LOC107725540,LOC107744909,LOC107587062 coding downstream 134352 8579051 ~ 8752834 (-)
LOC122342917 strap,LOC107725662,LOC107590065,LOC107744907,LOC107586834,LOC107659840,LOC107694684 coding downstream 354732 8528373 ~ 8532454 (-)
nrip2 nrip2,LOC107725649,LOC107695877,LOC107588270,LOC107744921,LOC107664860,LOC107590947 coding upstream 89925 8977878 ~ 9000458 (-)
dram1 LOC107725538,LOC107591237,LOC107695863,LOC107664855,LOC107596679,LOC107744952 coding upstream 130377 9018330 ~ 9023432 (-)
chpt1 chpt1,LOC107590206,LOC107725616,LOC107695881,LOC107744925,LOC107664854,LOC107588513,LOC107085961 coding upstream 154060 9042013 ~ 9048831 (-)
mybpc1 mybpc1,LOC107695883 coding upstream 161568 9049521 ~ 9082049 (-)
spi2 LOC107590970,LOC107695852,LOC107725518,LOC108233215 coding upstream 198591 9086544 ~ 9088361 (-)
G27253 NA non-coding downstream 72174 8809767 ~ 8815012 (-)
G27257 NA non-coding downstream 78002 8805244 ~ 8809184 (-)
G27263 NA non-coding downstream 81956 8804155 ~ 8805230 (-)
LOC122343385 NA non-coding downstream 113015 8762099 ~ 8774171 (-)
G27249 LOC107725541,LOC107659837,LOC107590048 non-coding downstream 350510 8533831 ~ 8536676 (-)
G27306 LOC107725624,LOC107744919,LOC107590167,LOC107587911,LOC107664885,LOC107695875 non-coding upstream 72493 8960446 ~ 8961433 (-)
G27417 NA non-coding upstream 115970 9003923 ~ 9004223 (-)
G27425 NA non-coding upstream 135924 9023877 ~ 9024077 (-)
LOC122343442 NA non-coding upstream 442054 9330007 ~ 9341739 (-)
G27469 NA non-coding upstream 610763 9498716 ~ 9504000 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other downstream 12588 8870215 ~ 8874598 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 369603 8513630 ~ 8517583 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other downstream 419158 8460506 ~ 8468028 (-)
LOC122343432 NA other downstream 637259 8247911 ~ 8249927 (-)
G26951 NA other downstream 1328733 7555115 ~ 7558453 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other upstream 4066 8892019 ~ 8941403 (-)
klhl42 klhl42 other upstream 116307 9004260 ~ 9009304 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other upstream 384019 9271972 ~ 9300179 (-)
zgc:193726 NA other upstream 1467758 10355711 ~ 10363566 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other upstream 1596969 10484922 ~ 10522249 (-)

Expression


Co-expression Network