G27345


Basic Information

Item Value
gene id G27345
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9054021 ~ 9057297 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU40515
TGCACAGACTAACCTTTGACCTCTAGTTTGCAGTCCACCTGAGCCTCTCCGAGGTCATTGACAGCTTTGCAGGTGTAAACACCTCCATCGAACGGGCTGGGCTTGCGGATCTCAAGCGTGCACACACCCTGGTTGCTGAACATGCGGTAACGCGGGTCGTCTATGATGATAATCTTGTTTTTCATCCAGATTACCTTAGGCTGTGAGCAGTAATGGAGTAAAGCATGAGAACACAGTCAACAGCAGATAGCATTAGTGGCGAAGAGGAACCAAAGCGACATCAGTCCGTCAAACACGTGGAGGGAAAGCTGCTGCTCTTCTCACATGTGCTAGGTGAAGTAGAGTGTTGAGTGACAGAAAGACAATATGATCTAGTGTGTCTGTGCTCAAAGATTATAACTAGCAGGTGCTGTTAAGCCCTTTGGGACACTCGCAGGTCGGGCCACAAAGAGCTAAATACAGGTGTAAAGCCATGAGCACATGGTTGGAGCCAAGCAGAATCAAAGACTTTCTCAgaacttaaaagaaaaagagcgaTATGCATCAGAACCTTGTGTCAGCCAATAACTTTTCATGAGTTCATcgacattaatatatatataattttagccGCTTTTATCTGCACTTCGGATAACTTAGTTTCTTTAGCCCTGTTTACATCGGTTATTGCCGTCTGCCACAgtactaaatataaatttaaacaacaccaaaaatgttttgtgatccaattaatcaaattatattCAGAGGCTGTCAGAAACTCCTGTGACTACGTTCATCAAGATTGAGCTTAAATTCAGGTGCAGGTCTAAGCTGCTGTTCTTTGCGTTTGAGTTTAActttgaacaaacaaacatttctttccaaaagataccagttttaaatgaatgatttcaatttaattcaagAATCTTGAAACAGAAATCCTGACAgatggagtaatggctgctgtcAAGTCATCAACTAAAATAGCATTTTGCCTCATTTTTggcaaaaattataattcaaacAGGCTATATTTAGCCACTTTTTGAGTTTTATCAACTGACTTGAACAGGGTCTTCATGTCTTGTGTTCTACACTGAAGATTTCTTGAATAACTGAATAAACATGCAACATGGACTGTCTGAGCAGGTGtcgacaaaaaaacacatttgagttAGCTTTCTAGTAGAGCGTCCTGTCGGTCCCTTACCCGAGGATTGGCCCTCACGCTACAGTTCAGGGTGGCGTTGTACCCAGCGATGGCGAAGGTGTTGATGAGCGGCTGAGTGAATGTAGGCGGCTCGGTGAAGTCGCGGTCATTATACTCGGGGATTTTCAGATGCAACCTTCTTTCACAATCAGAGCACTGTCTTTCGTGGCAGTGGCACTTTCACTTAAGCCGACCATGTTCTCTGAGTAGATCCTGAAGAAATACTCGTTACCCACCACCAGATCTGAGATTGTGATGCAGGTACGATGGTAGTGCTCTATGCATGTGTACCACTCCTTGTCTTTTTATCAGCTTTCTGGATGGTGTAGCCTGTTATGTGTGAGTTGCCGTTGTCCTTGGGTGGGTTCCAGTCCAGTGCTACGTTATTCCCCCAGATCTCTTCGATCTTTACAGCCTGTGGTGGGCCTGGAAGGTC

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU40515 True 1631 lncRNA 0.43 3 9054021 9057297

Neighbor

gene id symbol gene type direction distance location
gnptab gnptab,LOC107695880,LOC107664853,LOC107725516,LOC107725515 coding upstream 12165 9024477 ~ 9041856 (+)
cwf19l1 cwf19l1,LOC107695878,LOC107725658,LOC107744920,LOC107664857 coding upstream 38765 9010162 ~ 9015256 (+)
itfg2 itfg2 coding upstream 83427 8962606 ~ 8970594 (+)
recql recql,LOC107695875,LOC107590167,LOC107725624,LOC107587911,LOC107744919,LOC107664885 coding upstream 92788 8953947 ~ 8961233 (+)
nup37 nup37,LOC107590136,LOC107695872,LOC107664874,LOC107744917 coding upstream 188103 8855404 ~ 8865918 (+)
LOC122343441 LOC107553872,LOC107593900 coding downstream 260283 9317580 ~ 9323622 (+)
LOC122343440 NA coding downstream 267603 9324900 ~ 9333048 (+)
ncaph2 ncaph2,LOC107725678,LOC107590292,LOC107732965,LOC107553878 coding downstream 298670 9355967 ~ 9373818 (+)
slc26a4 slc26a4,LOC107664887,LOC107695858,LOC107553866,LOC107733015 coding downstream 488388 9545685 ~ 9554560 (+)
slc26a3.2 LOC107695870,LOC107591024,LOC107725685,LOC107695899,LOC107725684,LOC107591277 coding downstream 499532 9556829 ~ 9576961 (+)
G27301 NA non-coding upstream 100899 8952922 ~ 8953122 (+)
G27162 NA non-coding upstream 301172 8752438 ~ 8752849 (+)
G27121 NA non-coding upstream 548925 8471675 ~ 8505096 (+)
LOC122343529 NA non-coding upstream 676712 8374654 ~ 8377309 (+)
G27084 NA non-coding upstream 722719 8278559 ~ 8331302 (+)
G27347 LOC107590965,LOC107695883 non-coding downstream 571 9057868 ~ 9058292 (+)
G27352 NA non-coding downstream 11634 9068931 ~ 9076136 (+)
LOC122342713 NA non-coding downstream 20721 9078018 ~ 9081866 (+)
LOC122343257 NA non-coding downstream 31458 9088755 ~ 9098978 (+)
LOC122343448 NA non-coding downstream 289930 9347227 ~ 9351206 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other upstream 35688 9015841 ~ 9018333 (+)
ascl1a ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285 other upstream 163845 8874717 ~ 8890176 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other upstream 506019 8533816 ~ 8548002 (+)
spx spx,LOC107589995,LOC107744902,LOC107694690,LOC107596170,LOC107725633 other upstream 562083 8487911 ~ 8491938 (+)
stmp1 NA other upstream 570190 8482890 ~ 8483831 (+)
G27360 anks1b other downstream 105850 9163147 ~ 9227212 (+)
cfap54 cfap54,LOC107695893 other downstream 324245 9381542 ~ 9395757 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other downstream 446783 9504080 ~ 9522033 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other downstream 520018 9577315 ~ 9578574 (+)
G27490 NA other downstream 530022 9587319 ~ 9590318 (+)

Expression


Co-expression Network